cluster # 5167

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Anopheles gambiae
cluster # 5167 cluster # 5167 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5167#0 length = 604 sequences # 1
consensus_5167#1 length = 566 sequences # 1

consensus_5167#2 length = 536 sequences # 1
consensus_5167#3 length = 352 sequences # 1

consensusID : consensus_5167#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence

                              [CCGCCCACGCGTCCGAGGCTTCGTACGGTGAAGTTGTCCGAGTTGCTAGAGTTCGCACCACCCCCCCCACCCATGCCCCTGCTTGGCGACGAGTGTTTTCTGTTGAACTTTTCCCGAAGTGTTTGCCCTGCGGGCGTGTGTCCAACGTGTGCGCGGTATGGTGTCGACCGGTACGGCAAGCGCCAGCAACGAAACGGATCTCGGAATTAACGCGCCTGCTTCGATGTAACAATTGTTTCGCACGCGTCCGTCATCCTGTCCCAGTTGTCGTCGGCGGCGGTGCCGCTTGTTGTGTGTCCCGTTCCGTGTGTATGTGAGTGTGTGCATATGTGACTGTGAGTGTGCGCGTCCTGTACATTCAGTGACTTTTCCTTTTATTCTGGCGGCAGGGCAAACAAAGTGAGGTTACCTTGAAGGGACTGAGAATAAAACTTTCGATCGCGTCTTGCCTGCGCCAACCCTTCCCCACGCCCCGGTGCGGCGTGTGTTGCAAAATTAGCGTTTTTTGTGTGTACGCGTGTGTGTGCGTGTGCTTGTGCGTGATTGTTGTGTTGTGTCGCTCCTGTCATCCGCTTTCCGAGAAAGCAAACATCCCGCGCTCGCT]

[+] EMBL BM595774             [CCGCCCACGCGTCCGAGGCTTCGTACGGTGAAGTTGTCCGAGTTGCTAGAGTTCGCACCACCCCCCCCACCCATGCCCCTGCTTGGCGACGAGTGTTTTCTGTTGAACTTTTCCCGAAGTGTTTGCCCTGCGGGCGTGTGTCCAACGTGTGCGCGGTATGGTGTCGACCGGTACGGCAAGCGCCAGCAACGAAACGGATCTCGGAATTAACGCGCCTGCTTCGATGTAACAATTGTTTCGCACGCGTCCGTCATCCTGTCCCAGTTGTCGTCGGCGGCGGTGCCGCTTGTTGTGTGTCCCGTTCCGTGTGTATGTGAGTGTGTGCATATGTGACTGTGAGTGTGCGCGTCCTGTACATTCAGTGACTTTTCCTTTTATTCTGGCGGCAGGGCAAACAAAGTGAGGTTACCTTGAAGGGACTGAGAATAAAACTTTCGATCGCGTCTTGCCTGCGCCAACCCTTCCCCACGCCCCGGTGCGGCGTGTGTTGCAAAATTAGCGTTTTTTGTGTGTACGCGTGTGTGTGCGTGTGCTTGTGCGTGATTGTTGTGTTGTGTCGCTCCTGTCATCCGCTTTCCGAGAAAGCAAACATCCCGCGCTCGCT]




>consensus_5167#0
CCGCCCACGCGTCCGAGGCTTCGTACGGTGAAGTTGTCCGAGTTGCTAGAGTTCGCACCA
CCCCCCCCACCCATGCCCCTGCTTGGCGACGAGTGTTTTCTGTTGAACTTTTCCCGAAGT
GTTTGCCCTGCGGGCGTGTGTCCAACGTGTGCGCGGTATGGTGTCGACCGGTACGGCAAG
CGCCAGCAACGAAACGGATCTCGGAATTAACGCGCCTGCTTCGATGTAACAATTGTTTCG
CACGCGTCCGTCATCCTGTCCCAGTTGTCGTCGGCGGCGGTGCCGCTTGTTGTGTGTCCC
GTTCCGTGTGTATGTGAGTGTGTGCATATGTGACTGTGAGTGTGCGCGTCCTGTACATTC
AGTGACTTTTCCTTTTATTCTGGCGGCAGGGCAAACAAAGTGAGGTTACCTTGAAGGGAC
TGAGAATAAAACTTTCGATCGCGTCTTGCCTGCGCCAACCCTTCCCCACGCCCCGGTGCG
GCGTGTGTTGCAAAATTAGCGTTTTTTGTGTGTACGCGTGTGTGTGCGTGTGCTTGTGCG
TGATTGTTGTGTTGTGTCGCTCCTGTCATCCGCTTTCCGAGAAAGCAAACATCCCGCGCT
CGCT

consensusID : consensus_5167#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence

                              [CCGCGGACGCGTGGGCTGCGAGCGTGTGTCCAACGTGTGCGCGGTATGGTGTCGACCGGTACGGCAAGCGCCAGCAACGAAACGGATCTCGGAATTAACGCGCCTGCTTCGATGTAACAATTGTTTCGCACGCGTCCGTCATCCTGTCCCAGTTGTCGTCGGCGGCGGTGCCGCTTGTTGTGTGTCCCGTTCCGTGTGTATGTGAGTGTGTGCATATGTGACTGTGAGTGTGCGCGTCCTGTACATTCAGTGACTTTTCCTTTTATTCTGGCGGCAGGGCAAACAAAGTGAGGTTACCTTGAAGGGACTGAGAATAAAACTTTCGATCGCGTCTTGCCTGCGCCAACCCTTCCCCACGCCCCGGTGCGGCGTGTGTTGCAAAATTAGCGTTTTTTGTGTGTACGCGTGTGTGTGCGTGTGCTTGTGCGTGATTGTTGTGTTGTGTCGCTCCTGTCATCCGCTTTCCGAGAAGGCAAACATCCCGCGCTCGCTGACATCCGAGCTCTATCGCAATCAATCATCTCCTCTCGGTGGTCAAGATGGCAGACGATTCCCAGAGTGAAAAC]

[+] EMBL BM576521             [CCGCGGACGCGTGGGCTGCGAGCGTGTGTCCAACGTGTGCGCGGTATGGTGTCGACCGGTACGGCAAGCGCCAGCAACGAAACGGATCTCGGAATTAACGCGCCTGCTTCGATGTAACAATTGTTTCGCACGCGTCCGTCATCCTGTCCCAGTTGTCGTCGGCGGCGGTGCCGCTTGTTGTGTGTCCCGTTCCGTGTGTATGTGAGTGTGTGCATATGTGACTGTGAGTGTGCGCGTCCTGTACATTCAGTGACTTTTCCTTTTATTCTGGCGGCAGGGCAAACAAAGTGAGGTTACCTTGAAGGGACTGAGAATAAAACTTTCGATCGCGTCTTGCCTGCGCCAACCCTTCCCCACGCCCCGGTGCGGCGTGTGTTGCAAAATTAGCGTTTTTTGTGTGTACGCGTGTGTGTGCGTGTGCTTGTGCGTGATTGTTGTGTTGTGTCGCTCCTGTCATCCGCTTTCCGAGAAGGCAAACATCCCGCGCTCGCTGACATCCGAGCTCTATCGCAATCAATCATCTCCTCTCGGTGGTCAAGATGGCAGACGATTCCCAGAGTGAAAAC]




>consensus_5167#1
CCGCGGACGCGTGGGCTGCGAGCGTGTGTCCAACGTGTGCGCGGTATGGTGTCGACCGGT
ACGGCAAGCGCCAGCAACGAAACGGATCTCGGAATTAACGCGCCTGCTTCGATGTAACAA
TTGTTTCGCACGCGTCCGTCATCCTGTCCCAGTTGTCGTCGGCGGCGGTGCCGCTTGTTG
TGTGTCCCGTTCCGTGTGTATGTGAGTGTGTGCATATGTGACTGTGAGTGTGCGCGTCCT
GTACATTCAGTGACTTTTCCTTTTATTCTGGCGGCAGGGCAAACAAAGTGAGGTTACCTT
GAAGGGACTGAGAATAAAACTTTCGATCGCGTCTTGCCTGCGCCAACCCTTCCCCACGCC
CCGGTGCGGCGTGTGTTGCAAAATTAGCGTTTTTTGTGTGTACGCGTGTGTGTGCGTGTG
CTTGTGCGTGATTGTTGTGTTGTGTCGCTCCTGTCATCCGCTTTCCGAGAAGGCAAACAT
CCCGCGCTCGCTGACATCCGAGCTCTATCGCAATCAATCATCTCCTCTCGGTGGTCAAGA
TGGCAGACGATTCCCAGAGTGAAAAC

consensusID : consensus_5167#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence

                              [GCAGAATCCCCACGAGGTGTGACGGTACGGCAAGCGCCAGCACGAAACGGATCTCGGAATTAACGCGCCTGCTTCGATGTAACAATTGTTTCGCACGCGTCCGTCATCCTGTCCCAGTTGTCGTCGGCGGCGGTGCCGCTTGTTGTGTGTCCCGTTCCGTGTGTATGTGAGTGTGTGCATATGTGACTGTGAGTGTGCGCGTCCTGTACATTCAGTGACTTTTCCTTTTATTCTGGCGGCAGGGCAAACAAAGTGAGGTTACCTTGAAGGGACTGAGAATAAAACTTTCGATCGCGTCTTGCCTGCGCCAACCCTTCCCCACGCCCCGGTGCGGCGTGTGTTGCAAAATTAGCGTTTTTTGTGTGTACGCGTGTGTGTGCGTGTGCTTGTGCGTGATTGTTGTGTTGTGTCGCTCCTGTCATCCGCTTTCCGAGAAGGCAAACATCCCGCGCTCGCTGACATCCGAGCTCTATCGCAATCAATCATCTCCTCTCGGTGGTCAAGATGGCAGACGATTCCCAGAGTGAAAACAGCGC]

[+] EMBL AL694631             [GCAGAATCCCCACGAGGTGTGACGGTACGGCAAGCGCCAGCACGAAACGGATCTCGGAATTAACGCGCCTGCTTCGATGTAACAATTGTTTCGCACGCGTCCGTCATCCTGTCCCAGTTGTCGTCGGCGGCGGTGCCGCTTGTTGTGTGTCCCGTTCCGTGTGTATGTGAGTGTGTGCATATGTGACTGTGAGTGTGCGCGTCCTGTACATTCAGTGACTTTTCCTTTTATTCTGGCGGCAGGGCAAACAAAGTGAGGTTACCTTGAAGGGACTGAGAATAAAACTTTCGATCGCGTCTTGCCTGCGCCAACCCTTCCCCACGCCCCGGTGCGGCGTGTGTTGCAAAATTAGCGTTTTTTGTGTGTACGCGTGTGTGTGCGTGTGCTTGTGCGTGATTGTTGTGTTGTGTCGCTCCTGTCATCCGCTTTCCGAGAAGGCAAACATCCCGCGCTCGCTGACATCCGAGCTCTATCGCAATCAATCATCTCCTCTCGGTGGTCAAGATGGCAGACGATTCCCAGAGTGAAAACAGCGC]




>consensus_5167#2
GCAGAATCCCCACGAGGTGTGACGGTACGGCAAGCGCCAGCACGAAACGGATCTCGGAAT
TAACGCGCCTGCTTCGATGTAACAATTGTTTCGCACGCGTCCGTCATCCTGTCCCAGTTG
TCGTCGGCGGCGGTGCCGCTTGTTGTGTGTCCCGTTCCGTGTGTATGTGAGTGTGTGCAT
ATGTGACTGTGAGTGTGCGCGTCCTGTACATTCAGTGACTTTTCCTTTTATTCTGGCGGC
AGGGCAAACAAAGTGAGGTTACCTTGAAGGGACTGAGAATAAAACTTTCGATCGCGTCTT
GCCTGCGCCAACCCTTCCCCACGCCCCGGTGCGGCGTGTGTTGCAAAATTAGCGTTTTTT
GTGTGTACGCGTGTGTGTGCGTGTGCTTGTGCGTGATTGTTGTGTTGTGTCGCTCCTGTC
ATCCGCTTTCCGAGAAGGCAAACATCCCGCGCTCGCTGACATCCGAGCTCTATCGCAATC
AATCATCTCCTCTCGGTGGTCAAGATGGCAGACGATTCCCAGAGTGAAAACAGCGC

consensusID : consensus_5167#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence

                              [CCGCGGACGCGTGGGCGGCGTTGGTTATAAAATCGGCGCCAAACGCAGTTCTTTTCCATCCAAGGCTTCGTACGGTGAAGTTGTCCGAGTTGCTAGAGTTCGCACCACCCCCCCCCACCCATGCCCCTGCTTGGCGACGAGTGTTTTCTGTTGAACTTTCCCCGAAGTGTTTGCCCTGCGAGCGTGTGTCCAACGTGTGCGCGGTATGGTGTCGACCGGTACGGCAAGCGCCAGCAACGAAACGGATCTCGGAATTAACGCGCCTGCTTCGATGTAACAATTGTTTCCCACGCGTCCGTCATCCTGTCCCAATTGTCGTCGGCGGCGGTGCCGCTTGTTGTGTGTCCCGTTC]

[+] EMBL BM601049             [CCGCGGACGCGTGGGCGGCGTTGGTTATAAAATCGGCGCCAAACGCAGTTCTTTTCCATCCAAGGCTTCGTACGGTGAAGTTGTCCGAGTTGCTAGAGTTCGCACCACCCCCCCCCACCCATGCCCCTGCTTGGCGACGAGTGTTTTCTGTTGAACTTTCCCCGAAGTGTTTGCCCTGCGAGCGTGTGTCCAACGTGTGCGCGGTATGGTGTCGACCGGTACGGCAAGCGCCAGCAACGAAACGGATCTCGGAATTAACGCGCCTGCTTCGATGTAACAATTGTTTCCCACGCGTCCGTCATCCTGTCCCAATTGTCGTCGGCGGCGGTGCCGCTTGTTGTGTGTCCCGTTC]




>consensus_5167#3
CCGCGGACGCGTGGGCGGCGTTGGTTATAAAATCGGCGCCAAACGCAGTTCTTTTCCATC
CAAGGCTTCGTACGGTGAAGTTGTCCGAGTTGCTAGAGTTCGCACCACCCCCCCCCACCC
ATGCCCCTGCTTGGCGACGAGTGTTTTCTGTTGAACTTTCCCCGAAGTGTTTGCCCTGCG
AGCGTGTGTCCAACGTGTGCGCGGTATGGTGTCGACCGGTACGGCAAGCGCCAGCAACGA
AACGGATCTCGGAATTAACGCGCCTGCTTCGATGTAACAATTGTTTCCCACGCGTCCGTC
ATCCTGTCCCAATTGTCGTCGGCGGCGGTGCCGCTTGTTGTGTGTCCCGTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5167#0      ------------------------------------------------------------
consensus_5167#3      ------------------------------------------------------------
consensus_5167#1      CCGCGGACGCGTGGGCTGCGAGCGTGTGTCCAACGTGTGCGCGGTATGGTGTCGACCGGT 60
consensus_5167#2      ----------------------------------GCAGAATCCCCACGAGGTGTGACGGT 26
                                                                                  

consensus_5167#0      ------------------------------------------------------------
consensus_5167#3      ------------------------------------------------------------
consensus_5167#1      ACGGCAAGCGCCAGCAACGAAACGGATCTCGGAATTAACGCGCCTGCTTCGATGTAACAA 120
consensus_5167#2      ACGGCAAGCGCCAGCA-CGAAACGGATCTCGGAATTAACGCGCCTGCTTCGATGTAACAA 85
                                                                                  

consensus_5167#0      -----------------------------------------------------CCGCCCA 7
consensus_5167#3      ---CCGCGGACGCGTGGGCGGCGTTGGTTA---TAAAATCGGCGCCAAACGCAGTTCTTT 54
consensus_5167#1      TTGTTTCGCACGCGTCCGTCATCCTGTCCCAGTTGTCGTCGGCGGCGGTGCCGCTTGTTG 180
consensus_5167#2      TTGTTTCGCACGCGTCCGTCATCCTGTCCCAGTTGTCGTCGGCGGCGGTGCCGCTTGTTG 145
                                                                                  

consensus_5167#0      CGCGTCCGAGGCTTCGTACG-GTGAAGTTGTCCGAGT-----TGCTAGAGTTCGCACC-- 59
consensus_5167#3      TCCATCCAAGGCTTCGTACG-GTGAAGTTGTCCGAGT-----TGCTAGAGTTCGCACC-- 106
consensus_5167#1      TGTGTCCCGTTCCGTGTGTATGTGAGTGTGTGCATATGTGACTGTGAGTGTGCGCGTCCT 240
consensus_5167#2      TGTGTCCCGTTCCGTGTGTATGTGAGTGTGTGCATATGTGACTGTGAGTGTGCGCGTCCT 205
                          ***    *   **    ****   *** *   *     **  ** ** ***  *  

consensus_5167#0      --ACCCCCCCC-ACCCATGCCCCTGCT-TGGCGACGAGTGTTTTCTGTTGAACTTTTCCC 115
consensus_5167#3      --ACCCCCCCCCACCCATGCCCCTGCT-TGGCGACGAGTGTTTTCTGTTGAACTTTCCCC 163
consensus_5167#1      GTACATTCAGTGACTTTTCCTTTTATTCTGGCGGCAGGGCAAACAAAGTGAGGTTACCTT 300
consensus_5167#2      GTACATTCAGTGACTTTTCCTTTTATTCTGGCGGCAGGGCAAACAAAGTGAGGTTACCTT 265
                        **   *    **   * *   *  * ***** *  *          ***  **  *  

consensus_5167#0      GAAGTGTTTGC--------CCTGCGGGCGTGTGTCCAACGTGTGCGCGGTATGGTGTCGA 167
consensus_5167#3      GAAGTGTTTGC--------CCTGCGAGCGTGTGTCCAACGTGTGCGCGGTATGGTGTCGA 215
consensus_5167#1      GAAGGGACTGAGAATAAAACTTTCGATCGCGTCTTGCCTGCGCCAACCCTTCCCCACGCC 360
consensus_5167#2      GAAGGGACTGAGAATAAAACTTTCGATCGCGTCTTGCCTGCGCCAACCCTTCCCCACGCC 325
                      **** *  **         * * **  ** ** *     * *    *  *          

consensus_5167#0      CCGGTACGGCAAGCGCCAGCAACGAAACGGATCTCGGAATTA---------ACGCGCCTG 218
consensus_5167#3      CCGGTACGGCAAGCGCCAGCAACGAAACGGATCTCGGAATTA---------ACGCGCCTG 266
consensus_5167#1      CCGGTGCGGCGTGTGTTGCAAAATTAGCGTTTTTTGTGTGTACGCGTGTGTGTGCGTGTG 420
consensus_5167#2      CCGGTGCGGCGTGTGTTGCAAAATTAGCGTTTTTTGTGTGTACGCGTGTGTGTGCGTGTG 385
                      ***** ****  * *     **   * **  * * *    **           ***  **

consensus_5167#0      CTTCGATGTAACAATTGTTTCGCA-CGCGTCCGTCATCC--TGTCCCAGTTGTCG----- 270
consensus_5167#3      CTTCGATGTAACAATTGTTTCCCA-CGCGTCCGTCATCC--TGTCCCAATTGTCG----- 318
consensus_5167#1      CTTGTGCGTGATTGTTGTGTTGTGTCGCTCCTGTCATCCGCTTTCCGAGAAGGCAAACAT 480
consensus_5167#2      CTTGTGCGTGATTGTTGTGTTGTGTCGCTCCTGTCATCCGCTTTCCGAGAAGGCAAACAT 445
                      ***    ** *   **** *     ***  * *******  * *** *   * *      

consensus_5167#0      TCGGCGG-CGGTGCCGCTTGTTGTGTGTCCCGTTCCGTGTGTATGTGAGTGTGTGCATAT 329
consensus_5167#3      TCGGCGG-CGGTGCCGCTTGTTGTGTGTCCCGTTC------------------------- 352
consensus_5167#1      CCCGCGCTCGCTGACATCCGAGCTCTATCGCAATCAATCATCTCCTCTCGGTGGTCAAGA 540
consensus_5167#2      CCCGCGCTCGCTGACATCCGAGCTCTATCGCAATCAATCATCTCCTCTCGGTGGTCAAGA 505
                       * ***  ** ** *    *   * * ** *  **                         

consensus_5167#0      GTGACTGTGAGTGTGCGCGTCCTGTACATTCAGTGACTTTTCCTTTTATTCTGGCGGCAG 389
consensus_5167#3      ------------------------------------------------------------
consensus_5167#1      TGGCAGACGATTCCCAGAGTGAAAAC---------------------------------- 566
consensus_5167#2      TGGCAGACGATTCCCAGAGTGAAAACAGCGC----------------------------- 536
                                                                                  

consensus_5167#0      GGCAAACAAAGTGAGGTTACCTTGAAGGGACTGAGAATAAAACTTTCGATCGCGTCTTGC 449
consensus_5167#3      ------------------------------------------------------------
consensus_5167#1      ------------------------------------------------------------
consensus_5167#2      ------------------------------------------------------------
                                                                                  

consensus_5167#0      CTGCGCCAACCCTTCCCCACGCCCCGGTGCGGCGTGTGTTGCAAAATTAGCGTTTTTTGT 509
consensus_5167#3      ------------------------------------------------------------
consensus_5167#1      ------------------------------------------------------------
consensus_5167#2      ------------------------------------------------------------
                                                                                  

consensus_5167#0      GTGTACGCGTGTGTGTGCGTGTGCTTGTGCGTGATTGTTGTGTTGTGTCGCTCCTGTCAT 569
consensus_5167#3      ------------------------------------------------------------
consensus_5167#1      ------------------------------------------------------------
consensus_5167#2      ------------------------------------------------------------
                                                                                  

consensus_5167#0      CCGCTTTCCGAGAAAGCAAACATCCCGCGCTCGCT 604
consensus_5167#3      -----------------------------------
consensus_5167#1      -----------------------------------
consensus_5167#2      -----------------------------------