cluster # 5188

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Anopheles gambiae
cluster # 5188 cluster # 5188 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5188#0 length = 714 sequences # 2

consensus_5188#1 length = 661 sequences # 1
consensus_5188#2 length = 477 sequences # 1

consensusID : consensus_5188#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 714
fasta sequence

                              [GGCAGAATCNGCACGTGNGGTTTTATATACATACAAACACACACACACACACGCGTGGATATATTTTCTAGCCGTAAATGATGTTCCAGACAAGGAAGAAAAGGGAGAAAGTGCGATAGAGAGAGGACAGAGTAACGATGTACAAGGGCTTACGACTTACGAGCTATGCTATTCATATACATTCTAGATAGTGGTACAATTTTTTGTAACGATGTAACGTTTCTTACATTTCCAATGTTAAAGGGTGTTAAAGCAAAGGTCGAAAGCGAGGAGAGGTTTTTCATACCATTTTACAAAAATAGACACTTTGCAAATCGAAGTGTAATATACTGATACCGGAACGCACATCGCCATATCGTCGTTACATCACACCAGCTAGGGAAATGGATTCCTTTTNGGTTANTCACNATGAAGATAGTAAACAACGTTCAGACAGCATAAGTTAGGTGAAACGTTAACAGTTATGAAATGGTCCATTACAAGTGGCAGTAAGAAATTNGATATGGTTATTGTGCGTATTATGCTAGCTATCATTNAATTAACACATATGCAAACAGAATTTGGTGCAATCAGGAGTTTTTTTTGNTTTAAGCTGATGTTTCTACTATTCATATATATATATATATGTACCAGTAAGTTGGGGCGATTTATTGTCTAGAAATTTATACCATCATATGCAACACGTGCATANCATGACCGCAAACTACTAAACAT]

[+] EMBL BX467136             [GGCAGAATCNGCACGTGNGGTTTTATATACATACAAACACACACACACACACGCGTGGATATATTTTCTAGCCGTAAATGATGTTCCAGACAAGGAAGAAAAGGGAGAAAGTGCGATAGAGAGAGGACAGAGTAACGATGTACAAGGGCTTACGACTTACGAGCTATGCTATTCATATACATTCTAGATAGTGGTACAATTTTTTGTAACGATGTAACGTTTCTTACATTTCCAATGTTAAAGGGTGTTAAAGCAAAGGTCGAAAGCGAGGAGAGGTTTTTCATACCATTTTACAAAAATAGACACTTTGCAAATCGAAGTGTAATATACTGATACCGGAACGCACATCGCCATATCGTCGTTACATCACACCAGCTAGGGAAATGGATTCCTTTTNGGTTANTCACNATGAAGATAGTAAACAACGTTCAGACAGCATAAGTTAGGTGAAACGTTAACAGTTATGAAATGGTCCATTACAAGTGGCAGTAAGAAATTNGATATGGTTATTGTGCGTATTATGCTAGCTATCATTNAATTAACACATATGCAAACAGAATTTGGTGCAATC                                                                                                                                               ]
[+] EMBL BX622489             [                                                                                                                                                                                                                                                                                                                                                                                                                         TGAAGATAGTAAACAACGTTCANACAGCANAAGTTAGGTGAAATGTTAACAGTTATGAAATGGTCCATTACAAGTGGCAGTAAGAAATCGTTTATGCTTATTGTGCGTATTATGCTAGCTATCATT AATTAACACATATGCAAACAGAATTTGGTGCAATCAGGAGTTTTTTTTGNTTTAAGCTGATGTTTCTACTATTCATATATATATATATATGTACCAGTAAGTTGGGGCGATTTATTGTCTAGAAATTTATACCATCATATGCAACACGTGCATANCATGACCGCAAACTACTAAACAT]




>consensus_5188#0
GGCAGAATCNGCACGTGNGGTTTTATATACATACAAACACACACACACACACGCGTGGAT
ATATTTTCTAGCCGTAAATGATGTTCCAGACAAGGAAGAAAAGGGAGAAAGTGCGATAGA
GAGAGGACAGAGTAACGATGTACAAGGGCTTACGACTTACGAGCTATGCTATTCATATAC
ATTCTAGATAGTGGTACAATTTTTTGTAACGATGTAACGTTTCTTACATTTCCAATGTTA
AAGGGTGTTAAAGCAAAGGTCGAAAGCGAGGAGAGGTTTTTCATACCATTTTACAAAAAT
AGACACTTTGCAAATCGAAGTGTAATATACTGATACCGGAACGCACATCGCCATATCGTC
GTTACATCACACCAGCTAGGGAAATGGATTCCTTTTNGGTTANTCACNATGAAGATAGTA
AACAACGTTCAGACAGCATAAGTTAGGTGAAACGTTAACAGTTATGAAATGGTCCATTAC
AAGTGGCAGTAAGAAATTNGATATGGTTATTGTGCGTATTATGCTAGCTATCATTNAATT
AACACATATGCAAACAGAATTTGGTGCAATCAGGAGTTTTTTTTGNTTTAAGCTGATGTT
TCTACTATTCATATATATATATATATGTACCAGTAAGTTGGGGCGATTTATTGTCTAGAA
ATTTATACCATCATATGCAACACGTGCATANCATGACCGCAAACTACTAAACAT

consensusID : consensus_5188#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence

                              [AAGAATCCCCGAGGTTATTATATACATACAAACACACACACACACACGCGTGGATATATTTTCTAGCCGTAAATGATGTTCCAGACAAGGAAGAAAAGGGAGAAAGTGCGATAGAGAGAGGACAGAGTAACGATGTACAAGGGCTTACGACTTACGAGCTATGCTATTCATATACATTCTAGATAGTGGTACAATTTTTGTAACGATGTAACGTTTCTTACATTTCCAATGTTAAAGGGTGTTCAAAGCCAAAGGTCGAAAGCGAGGAGAGGTTTTTCATACCATTTTAACAGAACAATACGACACTTCTGAAATCGAAGTGTAATATACTGATACCGGAACGCACTGTCGCCATATCGTCGTTCACATTCACACCAGCTACGGAACATGGATTCCCTTNTTCGGCNCTCCCCTCCTATGAAGATAGTAAACAACGTTCAGACCAGCCATAAGTCAGGTGAAACGTTTAAGCAGTCTACTGACNTTGGTCCNATTACCNACGCTTGGCCCAGTGACACGAAACTNCTANCGTAATGGGTTTAATTGTGCGTTAGTTNATGTCTAGGCTATCATTAAATTTAACCACCAATTATGCNTAACACCAGGAATTCTGGGTGGCNACTCAGCGGAGGTTTTCTTCCGTNNGCTCTCAAAGCCNGAA]

[+] EMBL AL695051             [AAGAATCCCCGAGGTTATTATATACATACAAACACACACACACACACGCGTGGATATATTTTCTAGCCGTAAATGATGTTCCAGACAAGGAAGAAAAGGGAGAAAGTGCGATAGAGAGAGGACAGAGTAACGATGTACAAGGGCTTACGACTTACGAGCTATGCTATTCATATACATTCTAGATAGTGGTACAATTTTTGTAACGATGTAACGTTTCTTACATTTCCAATGTTAAAGGGTGTTCAAAGCCAAAGGTCGAAAGCGAGGAGAGGTTTTTCATACCATTTTAACAGAACAATACGACACTTCTGAAATCGAAGTGTAATATACTGATACCGGAACGCACTGTCGCCATATCGTCGTTCACATTCACACCAGCTACGGAACATGGATTCCCTTNTTCGGCNCTCCCCTCCTATGAAGATAGTAAACAACGTTCAGACCAGCCATAAGTCAGGTGAAACGTTTAAGCAGTCTACTGACNTTGGTCCNATTACCNACGCTTGGCCCAGTGACACGAAACTNCTANCGTAATGGGTTTAATTGTGCGTTAGTTNATGTCTAGGCTATCATTAAATTTAACCACCAATTATGCNTAACACCAGGAATTCTGGGTGGCNACTCAGCGGAGGTTTTCTTCCGTNNGCTCTCAAAGCCNGAA]




>consensus_5188#1
AAGAATCCCCGAGGTTATTATATACATACAAACACACACACACACACGCGTGGATATATT
TTCTAGCCGTAAATGATGTTCCAGACAAGGAAGAAAAGGGAGAAAGTGCGATAGAGAGAG
GACAGAGTAACGATGTACAAGGGCTTACGACTTACGAGCTATGCTATTCATATACATTCT
AGATAGTGGTACAATTTTTGTAACGATGTAACGTTTCTTACATTTCCAATGTTAAAGGGT
GTTCAAAGCCAAAGGTCGAAAGCGAGGAGAGGTTTTTCATACCATTTTAACAGAACAATA
CGACACTTCTGAAATCGAAGTGTAATATACTGATACCGGAACGCACTGTCGCCATATCGT
CGTTCACATTCACACCAGCTACGGAACATGGATTCCCTTNTTCGGCNCTCCCCTCCTATG
AAGATAGTAAACAACGTTCAGACCAGCCATAAGTCAGGTGAAACGTTTAAGCAGTCTACT
GACNTTGGTCCNATTACCNACGCTTGGCCCAGTGACACGAAACTNCTANCGTAATGGGTT
TAATTGTGCGTTAGTTNATGTCTAGGCTATCATTAAATTTAACCACCAATTATGCNTAAC
ACCAGGAATTCTGGGTGGCNACTCAGCGGAGGTTTTCTTCCGTNNGCTCTCAAAGCCNGA
A

consensusID : consensus_5188#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [GAGGAGAGGTTTTTCATACCATTTTACAAAAGTAGATACTTTGAAATCGAAGTGTAAACTACTGATACCGGAACGCACATCGCCATATCATCGTTACATCACACCAGCTAGGGAAATGGATTCCTTTTTTGGTTTTTTTTTATGAAGATAGTAAACAACGTTCAGACAGCAGAAGTTAAGTGAAATGGTAACAGTTATGAAATGGTCCATTACAAGTGGCAGTAAGAAATTGTTTATGCTTATTGTGTGTATTATGCTAGCTATCATTAATTAACACATATGCAAACATGGTGCAATCAGGAGTTTTTTTTGTTTTAAGCTGATGTTTCTACTATTCATATATATATGTACCAGTAAGTTGGGGCGATTTATTGTCTAGAAATTTATACAATCATATGCAACACGTGCATAGCATGACCGCAAACTACTAAACATGGCATTCGCTAGCCACGACAAAAAGTACGCTAAAATTCCATT]

[+] EMBL BM628518             [GAGGAGAGGTTTTTCATACCATTTTACAAAAGTAGATACTTTGAAATCGAAGTGTAAACTACTGATACCGGAACGCACATCGCCATATCATCGTTACATCACACCAGCTAGGGAAATGGATTCCTTTTTTGGTTTTTTTTTATGAAGATAGTAAACAACGTTCAGACAGCAGAAGTTAAGTGAAATGGTAACAGTTATGAAATGGTCCATTACAAGTGGCAGTAAGAAATTGTTTATGCTTATTGTGTGTATTATGCTAGCTATCATTAATTAACACATATGCAAACATGGTGCAATCAGGAGTTTTTTTTGTTTTAAGCTGATGTTTCTACTATTCATATATATATGTACCAGTAAGTTGGGGCGATTTATTGTCTAGAAATTTATACAATCATATGCAACACGTGCATAGCATGACCGCAAACTACTAAACATGGCATTCGCTAGCCACGACAAAAAGTACGCTAAAATTCCATT]




>consensus_5188#2
GAGGAGAGGTTTTTCATACCATTTTACAAAAGTAGATACTTTGAAATCGAAGTGTAAACT
ACTGATACCGGAACGCACATCGCCATATCATCGTTACATCACACCAGCTAGGGAAATGGA
TTCCTTTTTTGGTTTTTTTTTATGAAGATAGTAAACAACGTTCAGACAGCAGAAGTTAAG
TGAAATGGTAACAGTTATGAAATGGTCCATTACAAGTGGCAGTAAGAAATTGTTTATGCT
TATTGTGTGTATTATGCTAGCTATCATTAATTAACACATATGCAAACATGGTGCAATCAG
GAGTTTTTTTTGTTTTAAGCTGATGTTTCTACTATTCATATATATATGTACCAGTAAGTT
GGGGCGATTTATTGTCTAGAAATTTATACAATCATATGCAACACGTGCATAGCATGACCG
CAAACTACTAAACATGGCATTCGCTAGCCACGACAAAAAGTACGCTAAAATTCCATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5188#0      GGCAGAATCNGCACGTGNGGTTTTATATACATACAAACACACACACACACACGCGTGGAT 60
consensus_5188#2      ------------------------------------------------------------
consensus_5188#1      ----AAGAATCCCCGAGGTTATTATATACATACAAACACACACACACACACGCGTGGATA 56
                                                                                  

consensus_5188#0      ATATTTTCTAGCCGTAAATGATGTTCCAGACAAGGAAGAAAAGGGAGAAAGTGCGATAGA 120
consensus_5188#2      ------------------------------------------------------------
consensus_5188#1      TATTTTCTAGCCGTAAATGATGTTCCAGACAAGGAAGAAAAGGGAGAAAGTGCGATAGAG 116
                                                                                  

consensus_5188#0      GAGAGGACAGAGTAACGATGTACAAGGGCTTACGACTTACGAGCTATGCTATTCATATAC 180
consensus_5188#2      ------------------------------------------------------------
consensus_5188#1      AGAGGACAGAGTAACGATGTACAAGGGCTTACGACTTACGAGCTATGCTATTCATATACA 176
                                                                                  

consensus_5188#0      ATTCTAGATAGTGGTACAATTTTTTGTAACGATGTAACGTTTCTTACATTTCCAATGTTA 240
consensus_5188#2      ------------------------------------------------------------
consensus_5188#1      TTCTAGATAGTGGTACAATTTTTGTAACGATGTAACGTTTCTTACATTTCCAATGTTAAA 236
                                                                                  

consensus_5188#0      AAGGGTGTTAAAGCAAAGGTCGAAAGCGAGGAGAGGTTTTTCATACCATTTTACAAAAAT 300
consensus_5188#2      ---------------------------GAGGAGAGGTTTTTCATACCATTTTACAAAAGT 33
consensus_5188#1      GGGTGTTCAAAGCCAAAGGTCGAAAGCGAGGAGAGGTTTTTCATACCATTTTAACAGAAC 296
                                                 **************************  * *  

consensus_5188#0      A----GACACTTTGCAAATCGAAGTGTAATATACTGATACCGGAACGCAC-ATCGCCATA 355
consensus_5188#2      A----GATACTTTG-AAATCGAAGTGTAAACTACTGATACCGGAACGCAC-ATCGCCATA 87
consensus_5188#1      AATACGACACTTCTGAAATCGAAGTGTAATATACTGATACCGGAACGCACTGTCGCCATA 356
                      *    ** ****   **************  *******************  ********

consensus_5188#0      TCGTCGTT-ACAT-CACACCAGCTAGGGAA-ATGGATTCCTTTTN-----GGTTANTCAC 407
consensus_5188#2      TCATCGTT-ACAT-CACACCAGCTAGGGAA-ATGGATTCCTTTTTT----GGTTTTTTTT 140
consensus_5188#1      TCGTCGTTCACATTCACACCAGCTACGGAACATGGATTCCCTTNTTCGGCNCTCCCCTCC 416
                      ** ***** **** *********** **** ********* **         *       

consensus_5188#0      NATGAAGATAGTAAACAACGTTCAGACAG--CATAAGTTAGGTGAAACGTTAACAGTTAT 465
consensus_5188#2      TATGAAGATAGTAAACAACGTTCAGACAG--CAGAAGTTAAGTGAAATGGTAACAGTTAT 198
consensus_5188#1      TATGAAGATAGTAAACAACGTTCAGACCAGCCATAAGTCAGGTGAAACGTTTA------- 469
                       **************************    ** **** * ****** * * *       

consensus_5188#0      GAAATGGTCCATTACAAGTGGCAGTAAGAAATTNGATATGGTTATTGTGCGTATTATGCT 525
consensus_5188#2      GAAATGGTCCATTACAAGTGGCAGTAAGAAATTGTTTATGCTTATTGTGTGTATTATGCT 258
consensus_5188#1      --AGCAGTCTACTGACNTTGGTCC-----NATTACCNACGCTTGGCCCA-GTGACACGA- 520
                        *   *** * *     ***         ***    * * **       **   * *  

consensus_5188#0      AGCTATCATTNAATTAACACATATGCAAACAGAATTTGGTGCAATCAGGAGTTTTTTTTG 585
consensus_5188#2      AGCTATCATTAA-TTAACACATATGCAAACA-----TGGTGCAATCAGGAGTTTTTTTTG 312
consensus_5188#1      AACTNCTANCG---TAATGGGTTTAA----------TTGTGCG-TTAGTTNATGTCTAGG 566
                      * **   *      ***    * *            * ****  * **    * * *  *

consensus_5188#0      NTTTAAGCTGATGTTTCTACTATTCATATATATATATATATGTACCAGTAAGTTGGGGCG 645
consensus_5188#2      TTTTAAGCTGATGTTTCTACTATTCATATATAT------ATGTACCAGTAAGTTGGGGCG 366
consensus_5188#1      CTATCATTAAATTTAACCACCAATTATGCNTA---------ACACCAGGAATTCTGGGTG 617
                       * * *    ** *  * ** * * **   **           ***** ** *  *** *

consensus_5188#0      ATTTATTGTCTAGAAATTTATACCATCATATG-CAACACGTGCATANCATGACCGCAAAC 704
consensus_5188#2      ATTTATTGTCTAGAAATTTATACAATCATATG-CAACACGTGCATAGCATGACCGCAAAC 425
consensus_5188#1      GCNACTCAGCGGAGGTTTTCTTCCGTNNGCTCTCAAAGCCNGAA---------------- 661
                           *   *      *** * *  *    *  ***  *  * *                

consensus_5188#0      TACTAAACAT------------------------------------------ 714
consensus_5188#2      TACTAAACATGGCATTCGCTAGCCACGACAAAAAGTACGCTAAAATTCCATT 477
consensus_5188#1      ----------------------------------------------------