cluster # 5190

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Anopheles gambiae
cluster # 5190 cluster # 5190 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5190#0 length = 700 sequences # 2

consensus_5190#1 length = 616 sequences # 1
consensus_5190#2 length = 551 sequences # 1

consensusID : consensus_5190#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 700
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCAATCTTCAGTAAAGCACATCCTCCCACTGCAATCATCCCCCCCACCATGGCTTCCAAATTCGTTCTGA-TCGTCGCTTCTCTGGCTTGCGTCAGCGCTGGATACATCCCGAGCGACCACTCCCATCTGTCCTACGGTGTGGCCCCAGCTGTGAGCTACTCCAACGTCATCAAGAACGTTGCCCCAGTGCCAGTGCTGAGCAAGACCATCCTTCCGGAGCCCCAGCTGTACCACGGATACGCCCAGACTGCCCCGTCGGTTGTGGTCAGCAAGCCTCTGGCTCTTACCAACCCTCTGCCTGTGTCCTATGCCGCCCCTCACTCTCTGTACCAGGCTCCGGCTCTCGAGTACACAAAGCCTCTGTCTTATGGCCCATATGCCAAGACTGTGATCGCTGCTGAGCCAACCTACGCCAAGACTGTGATCGCTGCTGAGCCAACCTACGCCAAGACTCTGATCGCTGCTGAGCCAACCTACGCCAAGACTGTGATCGCTGCTGAGCCAGCCTATGCCAAGACT-GTGATTTCTGCT-GAGCCAACCTACGCCAAGACTGTGATCGCTGCTGAGCCAACCTACGCCAAGACCATCGTGTCGGAGCCCATCTACACCAAGAAACGTGTTCGCTGAGCCGATCTACCCGGGCAAGACGCTGATCGCTGAGCCCGTGTACGGC]

[+] EMBL BM654185             [CCGCCCACGCGTCCGCCCACGCGTCCGGCAATCTTCAGTAAAGCACATCCTCCCACTGCAATCATCCCCCCCACCATGGCTTCCAAATTCGTTCTGA TCGTCGCTTCTCTGGCTTGCGTCAGCGCTGGATACATCCCGAGCGACCACTCCCATCTGTCCTACGGTGTGGCCCCAGCTGTGAGCTACTCCAACGTCATCAAGAACGTTGCCCCAGTGCCAGTGCTGAGCAAGACCATCCTTCCGGAGCCCCAGCTGTACCACGGATACGCCCAGACTGCCCCGTCGGTTGTGGTCAGCAAGCCTCTGGCTCTTACCAACCCTCTGCCTGTGTCCTATGCCGCCCCTCACTCTCTGTACCAGGCTCCGGCTCTCGAGTACACAAAGCCTCTGTCTTATGGCCCATATGCCAAGACTGTGATCGCTGCTGAGCCAACCTACGCCAAGACTGTGATCGCTGCTGAGCCAACCTACGCCAAGACTCTGATCGCTGCTGAGCCAACCTACGCCAAGACTGTGATCGCTGCTGAGCCAGCCTATGCCAAGACT GTGATTTCTGCT GAGCCAACCTACGCCAAGACTGTGATCGCTGCTGAGCCAACCTACGCCAAGACCATCGTGTCGGAGCCCATCTACACCAAGAAACGTGTTCGCTGAGCCGATCTACCCGGGCAAGACGCTGATCGCTGAGCCCGTGTACGGC]
[+] EMBL BX619502             [                                                                                              TGATTCGTCGCTTCTCTGGCTTGCGTCAGCGCTGGATACATCCCGAGCGACCACTCCCATCTGTCCTACGGTGTGGCCCCGGCTGTGAGCTACTCCAACGTCATCAAGAACGTTGCCCCAGTGCCAGTGCTGAGCAAGACCATCCTTCCGGAGCCCCAGCTGTACCACGGATACGCCCAGACTGCCCCGTCGGTTGTGGTCAGCAAGCCTCTGGCTCTTACCAACCCTCTGCCCGTGTCCTATGCTGCCCCTCACTCTCTGTACCAGGCTCCGGCTCTCGAGTACACGAAGCCTCTGTCTTATGGCCCATATGCCAAGACTGTGATCGCTGCTGAGCCAACCTACGCCAAGACTCTGATCGCTGCTGAGCCAACCTACGCCAAGACTGTGATCGCTGCTGAGCCAGCCTATGCCAAGACTGTGATTTCTGCTGAGCCAACCTACGCCAAGACTNGTGATCGCTGCTNGAGCCAACCTACGCCAAag                                                                                                                           ]




>consensus_5190#0
CCGCCCACGCGTCCGCCCACGCGTCCGGCAATCTTCAGTAAAGCACATCCTCCCACTGCA
ATCATCCCCCCCACCATGGCTTCCAAATTCGTTCTGATCGTCGCTTCTCTGGCTTGCGTC
AGCGCTGGATACATCCCGAGCGACCACTCCCATCTGTCCTACGGTGTGGCCCCAGCTGTG
AGCTACTCCAACGTCATCAAGAACGTTGCCCCAGTGCCAGTGCTGAGCAAGACCATCCTT
CCGGAGCCCCAGCTGTACCACGGATACGCCCAGACTGCCCCGTCGGTTGTGGTCAGCAAG
CCTCTGGCTCTTACCAACCCTCTGCCTGTGTCCTATGCCGCCCCTCACTCTCTGTACCAG
GCTCCGGCTCTCGAGTACACAAAGCCTCTGTCTTATGGCCCATATGCCAAGACTGTGATC
GCTGCTGAGCCAACCTACGCCAAGACTGTGATCGCTGCTGAGCCAACCTACGCCAAGACT
CTGATCGCTGCTGAGCCAACCTACGCCAAGACTGTGATCGCTGCTGAGCCAGCCTATGCC
AAGACTGTGATTTCTGCTGAGCCAACCTACGCCAAGACTGTGATCGCTGCTGAGCCAACC
TACGCCAAGACCATCGTGTCGGAGCCCATCTACACCAAGAAACGTGTTCGCTGAGCCGAT
CTACCCGGGCAAGACGCTGATCGCTGAGCCCGTGTACGGC

consensusID : consensus_5190#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence

                              [CATCCTCCCACTGCAATCATCCCCCCCACCATGGCTTCCAAATTCGTTCTGATCGTCGCTTCCCTGGCTTGTGTCAGCGCTGGATACATCCCGAGCGACCACTCCCATCTGTCCTACGGTGTAGCCCCGGCTGTGAGCTACTCCAACGTCATCAAGAACGTTGCCCCAGTGCCAGTGCTGAGCAAGACCATCCTTCCGGAGCCTCAGCTGTACCACGGATACGCCCAGACTGCCCCGTCGGTTGTGGTCAGCAAGCCTCTGGCTCTTACCAACCCTCTGCCCGTGTCCTATGCTGCCCCTCACTCTCTGTACCAGGCTCCGGCTCTCGAGTACACGAAGCCTCTGTCTTATGGCCCATATGCCAAGACTGTGATCGCTGCTGAGCCAACCTACGCCAAGACTGTGATCGCTGCTGAGCCAGCCTATGCCAAGACCATCGTGTCGGAGCCCATCTACACCAAGAACGTGTTCGCTGAGCCGATCTACCCGGCCAAGACGCTGATCGCTGAGCCCGTGTACGGCAAGAGCATTCTCGCTCAGCCAGCTCCGATCTACGGTGGAAAGGTTCTGTCCTATGGCCCGCAGGTCGCCTACGGAGGCTATGGTGCCCATGGCT]

[+] EMBL BX628281             [CATCCTCCCACTGCAATCATCCCCCCCACCATGGCTTCCAAATTCGTTCTGATCGTCGCTTCCCTGGCTTGTGTCAGCGCTGGATACATCCCGAGCGACCACTCCCATCTGTCCTACGGTGTAGCCCCGGCTGTGAGCTACTCCAACGTCATCAAGAACGTTGCCCCAGTGCCAGTGCTGAGCAAGACCATCCTTCCGGAGCCTCAGCTGTACCACGGATACGCCCAGACTGCCCCGTCGGTTGTGGTCAGCAAGCCTCTGGCTCTTACCAACCCTCTGCCCGTGTCCTATGCTGCCCCTCACTCTCTGTACCAGGCTCCGGCTCTCGAGTACACGAAGCCTCTGTCTTATGGCCCATATGCCAAGACTGTGATCGCTGCTGAGCCAACCTACGCCAAGACTGTGATCGCTGCTGAGCCAGCCTATGCCAAGACCATCGTGTCGGAGCCCATCTACACCAAGAACGTGTTCGCTGAGCCGATCTACCCGGCCAAGACGCTGATCGCTGAGCCCGTGTACGGCAAGAGCATTCTCGCTCAGCCAGCTCCGATCTACGGTGGAAAGGTTCTGTCCTATGGCCCGCAGGTCGCCTACGGAGGCTATGGTGCCCATGGCT]




>consensus_5190#1
CATCCTCCCACTGCAATCATCCCCCCCACCATGGCTTCCAAATTCGTTCTGATCGTCGCT
TCCCTGGCTTGTGTCAGCGCTGGATACATCCCGAGCGACCACTCCCATCTGTCCTACGGT
GTAGCCCCGGCTGTGAGCTACTCCAACGTCATCAAGAACGTTGCCCCAGTGCCAGTGCTG
AGCAAGACCATCCTTCCGGAGCCTCAGCTGTACCACGGATACGCCCAGACTGCCCCGTCG
GTTGTGGTCAGCAAGCCTCTGGCTCTTACCAACCCTCTGCCCGTGTCCTATGCTGCCCCT
CACTCTCTGTACCAGGCTCCGGCTCTCGAGTACACGAAGCCTCTGTCTTATGGCCCATAT
GCCAAGACTGTGATCGCTGCTGAGCCAACCTACGCCAAGACTGTGATCGCTGCTGAGCCA
GCCTATGCCAAGACCATCGTGTCGGAGCCCATCTACACCAAGAACGTGTTCGCTGAGCCG
ATCTACCCGGCCAAGACGCTGATCGCTGAGCCCGTGTACGGCAAGAGCATTCTCGCTCAG
CCAGCTCCGATCTACGGTGGAAAGGTTCTGTCCTATGGCCCGCAGGTCGCCTACGGAGGC
TATGGTGCCCATGGCT

consensusID : consensus_5190#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [CAAGAATTCCCCGCAGGTTTAATCTTCAGTAAAGCACATCTCCCACTGCAATCATCTCTCCAACCATGGCTTCCAAATTCGTTCTGATCGTCGCTTCTCTGGCTTGCGTCAGCCGCTGGATACATCCCGAGCGACACTCCCATCTGTCCTACGGTGTGGCCCCAGCTGTGAGCTACATCCAACGTCATCAAGAACGTTGCCCCAGTGCCAGTGCTGAGCAAGACCATTCCTTTCCGGAGCCCCAAGCTTGTACCACGGATTAACGGCCCAAGACTTGGCCCCGTTCGGTTGTGNGTCAGCAAGGCCTCTTGGACTCTTACCAACGCCTTCTTGACCTTGGTTGTACCTTATTGCCGGCACCCTTCAACTCTCTTGTACCAGGCTTCCGGGNTCTTCGGAAGTTACAACAAAAGGCCTACTGTCTTTATTGGCCCAATTTGCCAAGGACTGTGATTCGGCTGCTTGAGCCAACCTTACGGCCAAGGACCTCTTGCATCGCTTGCTTGAGCCAAACCTTACAGCCAAAAGACCTGTAGATATAGCGTGCATTG]

[+] EMBL AL695123             [CAAGAATTCCCCGCAGGTTTAATCTTCAGTAAAGCACATCTCCCACTGCAATCATCTCTCCAACCATGGCTTCCAAATTCGTTCTGATCGTCGCTTCTCTGGCTTGCGTCAGCCGCTGGATACATCCCGAGCGACACTCCCATCTGTCCTACGGTGTGGCCCCAGCTGTGAGCTACATCCAACGTCATCAAGAACGTTGCCCCAGTGCCAGTGCTGAGCAAGACCATTCCTTTCCGGAGCCCCAAGCTTGTACCACGGATTAACGGCCCAAGACTTGGCCCCGTTCGGTTGTGNGTCAGCAAGGCCTCTTGGACTCTTACCAACGCCTTCTTGACCTTGGTTGTACCTTATTGCCGGCACCCTTCAACTCTCTTGTACCAGGCTTCCGGGNTCTTCGGAAGTTACAACAAAAGGCCTACTGTCTTTATTGGCCCAATTTGCCAAGGACTGTGATTCGGCTGCTTGAGCCAACCTTACGGCCAAGGACCTCTTGCATCGCTTGCTTGAGCCAAACCTTACAGCCAAAAGACCTGTAGATATAGCGTGCATTG]




>consensus_5190#2
CAAGAATTCCCCGCAGGTTTAATCTTCAGTAAAGCACATCTCCCACTGCAATCATCTCTC
CAACCATGGCTTCCAAATTCGTTCTGATCGTCGCTTCTCTGGCTTGCGTCAGCCGCTGGA
TACATCCCGAGCGACACTCCCATCTGTCCTACGGTGTGGCCCCAGCTGTGAGCTACATCC
AACGTCATCAAGAACGTTGCCCCAGTGCCAGTGCTGAGCAAGACCATTCCTTTCCGGAGC
CCCAAGCTTGTACCACGGATTAACGGCCCAAGACTTGGCCCCGTTCGGTTGTGNGTCAGC
AAGGCCTCTTGGACTCTTACCAACGCCTTCTTGACCTTGGTTGTACCTTATTGCCGGCAC
CCTTCAACTCTCTTGTACCAGGCTTCCGGGNTCTTCGGAAGTTACAACAAAAGGCCTACT
GTCTTTATTGGCCCAATTTGCCAAGGACTGTGATTCGGCTGCTTGAGCCAACCTTACGGC
CAAGGACCTCTTGCATCGCTTGCTTGAGCCAAACCTTACAGCCAAAAGACCTGTAGATAT
AGCGTGCATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5190#0      CCGCCCACGCGTCCGCCCACGCGTCCGGCAATCTTCAGTAAAGCACATCCTCCCACTGCA 60
consensus_5190#1      ---------------------------------------------CATCCTCCCACTGCA 15
consensus_5190#2      ---------CAAGAATTCCCCGCAGGTTTAATCTTCAGTAAAGCACATC-TCCCACTGCA 50
                                                                   **** **********

consensus_5190#0      ATCATCCCCCCCACCATGGCTTCCAAATTCGTTCTGATCGTCGCTTCTCTGGCTTGCGTC 120
consensus_5190#1      ATCATCCCCCCCACCATGGCTTCCAAATTCGTTCTGATCGTCGCTTCCCTGGCTTGTGTC 75
consensus_5190#2      ATCATCTCTCCAACCATGGCTTCCAAATTCGTTCTGATCGTCGCTTCTCTGGCTTGCGTC 110
                      ****** * ** *********************************** ******** ***

consensus_5190#0      AGC-GCTGGATACATCCCGAGCGACCACTCCCATCTGTCCTACGGTGTGGCCCCAGCTGT 179
consensus_5190#1      AGC-GCTGGATACATCCCGAGCGACCACTCCCATCTGTCCTACGGTGTAGCCCCGGCTGT 134
consensus_5190#2      AGCCGCTGGATACATCCCGAGCGAC-ACTCCCATCTGTCCTACGGTGTGGCCCCAGCTGT 169
                      *** ********************* ********************** ***** *****

consensus_5190#0      GAGCTAC-TCCAACGTCATCAAGAACGTTGCCCCAGTGCCAGTGCTGAGCAAGACCATCC 238
consensus_5190#1      GAGCTAC-TCCAACGTCATCAAGAACGTTGCCCCAGTGCCAGTGCTGAGCAAGACCATCC 193
consensus_5190#2      GAGCTACATCCAACGTCATCAAGAACGTTGCCCCAGTGCCAGTGCTGAGCAAGACCATTC 229
                      ******* ************************************************** *

consensus_5190#0      --TTCCGGAGCCCCAG--CTGTACCACGGAT--ACGCCC--AGACT--GCCCCGT-CGGT 287
consensus_5190#1      --TTCCGGAGCCTCAG--CTGTACCACGGAT--ACGCCC--AGACT--GCCCCGT-CGGT 242
consensus_5190#2      CTTTCCGGAGCCCCAAGCTTGTACCACGGATTAACGGCCCAAGACTTGGCCCCGTTCGGT 289
                        ********** **    ************  *** **  *****  ******* ****

consensus_5190#0      TGTGG-TCAGCAAG-CCTCT--GGCTCTTACCAACCCTCTGCCTGTGTCCTATGCCGCCC 343
consensus_5190#1      TGTGG-TCAGCAAG-CCTCT--GGCTCTTACCAACCCTCTGCCCGTGTCCTATGCTGCCC 298
consensus_5190#2      TGTGNGTCAGCAAGGCCTCTTGGACTCTTACCAACGCCTT---CTTGACCTTGGTTGTAC 346
                      ****  ******** *****  * *********** *  *     ** ***  *  *  *

consensus_5190#0      CTCACTCTCTGTACCAGGCTCCGGCTCTCGAGTACACAAAGCCTCTGTCTTATGGCCCAT 403
consensus_5190#1      CTCACTCTCTGTACCAGGCTCCGGCTCTCGAGTACACGAAGCCTCTGTCTTATGGCCCAT 358
consensus_5190#2      CTTATTGCCGGCACC---CTTCAACTCTCTTGTACCAGGCTTCCGGGNTCTTCGGAAGTT 403
                      ** * *  * * ***   ** *  *****  ****       *   *   *  **    *

consensus_5190#0      ATGCCAAGA---CTGTGATCGCTGCTGAGCCAACCTACGCCAAGACTGTGATCGCTGCTG 460
consensus_5190#1      ATGCCAAGA---CTGTGATCGCTGCTGAGCCAACCTACGCCAAGACTGTGATCGCTGCTG 415
consensus_5190#2      ACAACAAAAGGCCTACTGTCTTTATTGGCCCAATTTGC-CAAGGACTGTGATT-CGGCTG 461
                      *   *** *   **    **  *  **  ****  * * * * *********  * ****

consensus_5190#0      AGCCAACCTACGCCAAGACTCTGATCGCTGCTGAGCCAACCTACGCCAAGACTGTGATCG 520
consensus_5190#1      AGCCAGCCTATGCCAAGACC---ATCGTGTCGGAGCCCATCTACACCAAGAACGTGTTCG 472
consensus_5190#2      CTTGAGCCAACCTTACGGCC-----------AAGGACCTCTTGCATC--------GCTTG 502
                          * ** *    * * *               * *    * *  *        * * *

consensus_5190#0      CTGCTGAGCCAGCCTAT---GCCAAGACTGTGATTTCTGCTGAGCCAACCTACGCCAAGA 577
consensus_5190#1      CT---GAGCCGATCTACCCGGCCAAGACGCTGAT---CGCTGAGCCCGTGTACGGCAAGA 526
consensus_5190#2      CT--TGAGCCAAACCTTACAGCCAAAAGACC------TGTAGATATAGCGTGCATTG--- 551
                      **   *****   *      ***** *           *  **       * *       

consensus_5190#0      CTGTGATCGCTGCTGAGCCAACCTACGCCAAGACCATCGTGTCGGAGCCCATCTACACCA 637
consensus_5190#1      GCATTCTCGCT-------CAGCCAGCTCCGAT-CTACGGTGGAAAGGT---TCTGTCCTA 575
consensus_5190#2      ------------------------------------------------------------
                                                                                  

consensus_5190#0      AGAAACGTGTTCGCTGAGCCGATCTACCCGGGCAA-GACGCTGATCGCTGAGCCCGTGTA 696
consensus_5190#1      TG------GCCCGCAGGTC--GCCTACGGAGGCTATGGTGCCCATGGCT----------- 616
consensus_5190#2      ------------------------------------------------------------
                                                                                  

consensus_5190#0      CGGC 700
consensus_5190#1      ----
consensus_5190#2      ----