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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5198#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 956 fasta sequence
[CCGCCCACGCGTCCGCATTTTTACTTTCCCATCGATTTGCGTGTCGTTTTCTTTCGTCCATTTCCGCACAAAACCAAACACCCCGATGGTCGAACAACGGTGCGACAGTTGAACCCGGTTCAAACGAGCCAGCAACACCATGCCGACCCGTTTTAAGCTGCGACCATGTGTGTCTTCAGAGCAACGTTGCACAAACGCCAGCCCGAAACGAATCGTTATCGTAAAATGTTGCTAAGAAAGGTTGGCAAAGCGTGCTGTTAACGAGCTTTTTGTCCACCGTTCCTGAGGAGAGAGTGTGTGCGTGTCCCAACCCGACTGTTGCCCGTCAATAAACACCCGGCAACGTTGCAGCCCAAACCAGAGCGAAAGGAAACCGTCCCCAAAATGTCATTCCGCGACTGGAAGATTGTGCGGGTGCTGGCCGGAATAGCGATGCGAATATGGGCCGCCAGTGGAGCTGCCCTGCTGTCCGCCTTCCTGATCTACGTGGTGTATGGGGGCTTTTTTGCCTTCCTGCTACTTTTATTCGCCGTTTCTGGCATTCTGTACCACGCGCAGGACAACCTGCTGTACCATCCGGAGCTGCCGGCCAACTCGCGCATCTTCATACCCGTTCCCTCCATGCACGGGCTGCCTTACGAAACGCTGCACCTGAAAACGCGCGATGCCGTCTCACTGCACGCGTTCTGGATCCGGCACCCAGGCGACAAGGGCCGCTACGTGCCAACGATTGTATACTTTCACGGCAATGCCGGCAACATGGGGCACCGGTTGCAGAACGCCACCGGCTTCTATCACACGCTTCAGTGCAACGTGCTGATGGTGGAGTACCGCGGGTACGGCCTGTCGACGGGCACGCCAAGCGAGAAAGGCTTCTTTGCCGATGCCCGCTCCGTGCTGGACCATCTATTCAGCCGGCACGATCTGGACCATGGGCAGATCGTGGTGTTTGGCCG]
[+] EMBL BM605497 [CCGCCCACGCGTCCGCATTTTTACTTTCCCATCGATTTGCGTGTCGTTTTCTTTCGTCCATTTCCGCACAAAACCAAACACCCCGATGGTCGAACAACGGTGCGACAGTTGAACCCGGTTCAAACGAGCCAGCAACACCATGCCGACCCGTTTTAAGCTGCGACCATGTGTGTCTTCAGAGCAACGTTGCACAAACGCCAGCCCGAAACGAATCGTTATCGTAAAATGTTGCTAAGAAAGGTTGGCAAAGCGTGCTGTTAACGAGCTTTTTGTCCACCGTTCCTGAGGAGAGAGTGTGTGCGTGTCCCAACCCGACTGTTGCCCGTCAATAAACACCCGGCAACGTTGCAGCCCAAACCAGAGCGAAAGGAAACCGTCCCCAAAATGTCATTCCGCGACTGGAAGATTGTGCGGGTGCTGGCCGGAATAGCGATGCGAATATGGGCCGCCAGTGGAGCTGCCCTGCTGTCCGCCTTCCTGATCTACGTGGTGTATGGGGGCTTTTTTGCCTTCCTGCTACTTTTATTCGCCGTTTCTGGCATTCTGTACCACGCGCAGGACAACCTGCTGTACCATCCGGAGCTGCCGGCCAACTCGCGCATCTTCATACCCGTTCCCTCCATGCACGGGCTGCCTTACGAAACGCTGCACCTGAAAACGCGCGATGCCGTCTCACTGCACGCGTTCTGGATCCGGCACCCAGGCGACAAGGG ]
[+] EMBL BM639068 [ ccgCACCCGGCAACGTTGCAGCCCAAACCAGAGCGAAAGGAAACCGTCCCCAAAATGTCATTCCGCGACTGGAAGATTGTGCGGGTGCTGGCCGGAATAGCGATGCGAATATGGGCCGCCAGTGGAGCTGCCCTGCTGTCCGCCTTCCTGATCTACGTGGTGTATGGGGGCTTTTTTGCCTTCCTGCTACTTTTATTCGCCGTTTCTGGCATTCTGTACCACGCGCAGGACAACCTGCTGTACCATCCGGAGCTGCCGGCCAACTCGCGCATCTTCATACCCGTTCCCTCCATGCACGGGCTGCCTTACGAAACGCTGCACCTGAAAACGCGCGATGCCGTCTCACTGCACGCGTTCTGGATCCGGCACCCAGGCGACAAGGGCCGCTACGTGCCAACGATTGTATACTTTCACGGCAATGCCGGCAACATGGGGCACCGGTTGCAGAACGCCACCGGCTTCTATCACACGCTTCAGTGCAACGTGCTGATGGTGGAGTACCGCGGGTACGGCCTGTCGACGGGCACGCCAAGCGAGAAAGGCTTCTTTGCCGATGCCCGCTCCGTGCTGGACCATCTATTCAGCCGGCACGATCTGGACCATGGGCAGATCGTGGTGTTTGGCCG]
consensusID : consensus_5198#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 755 fasta sequence
[CCTCAAGGCAGAATNCCCGCGGTTATANGCCACACACTCCGTAACCCGGTAGAACTGGCAACATTTTTACTTTCCCATCGATTTGCGTGTCGTANATTCTTATCGTCCATATTCCTGCACAAAGCCAAACACTCCGATGGCGAACAACGGTGCGACAGTTGAACCCGATTACAAACGTGCCCTGCAAGACCATGCCGACCGGTTTATAAGCTGCGACCATGTGTGTCTATCAGCGCTACGTTGCGACAAAGGCCAACCGAAACGACATCGGNCATCGTCACAATNGTTGCTCAACGANACGNGTATTGGGGGCCACAANGCGTTAGCCTTGGTTAAAACAGCAGCATTTAAGAATGAGTGACCACCCGGTAACACTTGACNTGCAGACGANGTTGGTTGGTNACCCCCAAAAGCCCCNGAACTNGGTATGGCCCCCGGTACCAAAATAAAGATTAAACCCCCCGTGAGCACAANAGATATTACGCATGGCCCCACACAAAAAGCAGNGCACGNCCTGACACAATCGTGGGAAAAAAANCCTGTATACCACTCCNCAAAACACAAAATTATGGTTACCNNANTANNATNCCGCCNGCANGGCAAACCTTTAGGGGCGCAAGANCGGACTATATGGTACGGCAGTAGTGGTTTCGTCCTTCTGNGANCCCTAGGAGGCAAACTNTACAGGAANCGNAATANACGAGCAGAATAACAAAGNGNANGCAAACTGCGACACCNAGGATTAGGTGTNAACG]
[+] EMBL AL695327 [CCTCAAGGCAGAATNCCCGCGGTTATANGCCACACACTCCGTAACCCGGTAGAACTGGCAACATTTTTACTTTCCCATCGATTTGCGTGTCGTANATTCTTATCGTCCATATTCCTGCACAAAGCCAAACACTCCGATGGCGAACAACGGTGCGACAGTTGAACCCGATTACAAACGTGCCCTGCAAGACCATGCCGACCGGTTTATAAGCTGCGACCATGTGTGTCTATCAGCGCTACGTTGCGACAAAGGCCAACCGAAACGACATCGGNCATCGTCACAATNGTTGCTCAACGANACGNGTATTGGGGGCCACAANGCGTTAGCCTTGGTTAAAACAGCAGCATTTAAGAATGAGTGACCACCCGGTAACACTTGACNTGCAGACGANGTTGGTTGGTNACCCCCAAAAGCCCCNGAACTNGGTATGGCCCCCGGTACCAAAATAAAGATTAAACCCCCCGTGAGCACAANAGATATTACGCATGGCCCCACACAAAAAGCAGNGCACGNCCTGACACAATCGTGGGAAAAAAANCCTGTATACCACTCCNCAAAACACAAAATTATGGTTACCNNANTANNATNCCGCCNGCANGGCAAACCTTTAGGGGCGCAAGANCGGACTATATGGTACGGCAGTAGTGGTTTCGTCCTTCTGNGANCCCTAGGAGGCAAACTNTACAGGAANCGNAATANACGAGCAGAATAACAAAGNGNANGCAAACTGCGACACCNAGGATTAGGTGTNAACG]
consensusID : consensus_5198#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence
[CCGGTAGAACGGCAACATTTTTACTTTCCCATCGATTTGCGTGTCGTTTTCTTTCGTCCATTTCCGCACAAAGCCAAACACTCCGATGGCCGAACAACGGTGCGACAGTTGAACCCGATTCAAACGTGCCCGCAACACCATGCCGACCGGTTTTAAGCTGCGACCATGTGTGTCTTCAGCGCTACGTTGCACAAACGCCAACCCGAAACGAATCGTTATCGTAAAATGTTGCTAAGAAAGGTTGGCAAAGCGTGCTGTTAACGAGCTTTTTGTCCACCGTTCCTGAGGAGAGAGTGTGTCCCAACCCGACTGTTGCCCGTCAATAAATACCCGGCAACGTTGCAGCCCAAAACAGAGCGAAAGGAAACCGTCCCCAAAATGTCATTCCGCGACTGGAAGATTGTGCGGGTGCTGGCCGGAATAGCGATGCGGATATGGGCCGCCAGTGGAGCTGCCCTGCTGTCCGCCTTCCTGATCTACGTGGTGTATGGGGGCTTTTTTTGCCTTCCTGCTGCTTTTATTCGCCATTTCTGGCATTCTGTACCACGCGCAGGACAACCTGCTGTACCATCCGGAGCTGCCGGCCAACTCGCGCATCTTCATACCCGTTCCCTCCATGCACGGGCTGCCTTACGAAACGCTGCACCTGAAA]
[+] EMBL BM575621 [CCGGTAGAACGGCAACATTTTTACTTTCCCATCGATTTGCGTGTCGTTTTCTTTCGTCCATTTCCGCACAAAGCCAAACACTCCGATGGCCGAACAACGGTGCGACAGTTGAACCCGATTCAAACGTGCCCGCAACACCATGCCGACCGGTTTTAAGCTGCGACCATGTGTGTCTTCAGCGCTACGTTGCACAAACGCCAACCCGAAACGAATCGTTATCGTAAAATGTTGCTAAGAAAGGTTGGCAAAGCGTGCTGTTAACGAGCTTTTTGTCCACCGTTCCTGAGGAGAGAGTGTGTCCCAACCCGACTGTTGCCCGTCAATAAATACCCGGCAACGTTGCAGCCCAAAACAGAGCGAAAGGAAACCGTCCCCAAAATGTCATTCCGCGACTGGAAGATTGTGCGGGTGCTGGCCGGAATAGCGATGCGGATATGGGCCGCCAGTGGAGCTGCCCTGCTGTCCGCCTTCCTGATCTACGTGGTGTATGGGGGCTTTTTTTGCCTTCCTGCTGCTTTTATTCGCCATTTCTGGCATTCTGTACCACGCGCAGGACAACCTGCTGTACCATCCGGAGCTGCCGGCCAACTCGCGCATCTTCATACCCGTTCCCTCCATGCACGGGCTGCCTTACGAAACGCTGCACCTGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5198#0 ---------------------------------------------CCGCCCACGC-GTCC 14
consensus_5198#2 ---------------------------------------------CCGGTAGAAC-GGCA 14
consensus_5198#1 CCTCAAGGCAGAATNCCCGCGGTTATANGCCACACACTCCGTAACCCGGTAGAACTGGCA 60
*** * * *
consensus_5198#0 GCATTTTTACTTTCCCATCGATTTGCGTGTCGT---TTTCTTTCGTCCAT--TTCCGCAC 69
consensus_5198#2 ACATTTTTACTTTCCCATCGATTTGCGTGTCGT---TTTCTTTCGTCCAT--TTCCGCAC 69
consensus_5198#1 ACATTTTTACTTTCCCATCGATTTGCGTGTCGTANATTCTTATCGTCCATATTCCTGCAC 120
******************************** ** * ******** * * ****
consensus_5198#0 AAAACCAAACACCCCGATGGTCGAACAACGGTGCGACAGTTGAACCCGGTT-CAAACGAG 128
consensus_5198#2 AAAGCCAAACACTCCGATGGCCGAACAACGGTGCGACAGTTGAACCCGATT-CAAACGTG 128
consensus_5198#1 AAAGCCAAACACTCCGATGG-CGAACAACGGTGCGACAGTTGAACCCGATTACAAACGTG 179
*** ******** ******* *************************** ** ****** *
consensus_5198#0 CCA-GCAACACCATGCCGACCCGTTT-TAAGCTGCGACCATGTGTGTCT-TCAGAGCAAC 185
consensus_5198#2 CCC-GCAACACCATGCCGACCGGTTT-TAAGCTGCGACCATGTGTGTCT-TCAGCGCTAC 185
consensus_5198#1 CCCTGCAAGACCATGCCGACCGGTTTATAAGCTGCGACCATGTGTGTCTATCAGCGCTAC 239
** **** ************ **** ********************** **** ** **
consensus_5198#0 GTTGC-ACAAACGCCAGCCCGAAACGAATCGTTATCGTAAAATGTTGCTAAGAAAGGTTG 244
consensus_5198#2 GTTGC-ACAAACGCCAACCCGAAACGAATCGTTATCGTAAAATGTTGCTAAGAAAGGTTG 244
consensus_5198#1 GTTGCGACAAAGGCCAACC-GAAACGA-----CATCGGNCATCGTCACAATNGTTGCTCA 293
***** ***** **** ** ******* **** * ** * * * *
consensus_5198#0 GCAAAGCGTGCTGTTAACGAGCTT--TTTGTCCACCGTTCCTGAGGAGAGAGTGTGTGCG 302
consensus_5198#2 GCAAAGCGTGCTGTTAACGAGCTT--TTTGTCCACCGTTCCTGAGGAGAGAGTGTGT--- 299
consensus_5198#1 ACGANACGNG-TATTGGGGGCCACAANGCGTTAGCCTTGGTTAAAACAGCAGCATTT--- 349
* * ** * * ** * * ** ** * * * ** * *
consensus_5198#0 TGTCCCAACCCGACTGTTGCCCGTCAATAAACACCCGGCA-ACGTTGCAGCCCAAACCAG 361
consensus_5198#2 ---CCCAACCCGACTGTTGCCCGTCAATAAATACCCGGCA-ACGTTGCAGCCCAAAACAG 355
consensus_5198#1 ----AAGAATGAGTGACCACCCGGTAACACTTGACNTGCAGACGANGTTGGTTGG-TNAC 404
* **** ** * * *** *** * * *
consensus_5198#0 AGCGAAAGGAAACCGTCCCCAAAATGTCATTCCGCGACTGGA---AGATTGTGCGGGTGC 418
consensus_5198#2 AGCGAAAGGAAACCGTCCCCAAAATGTCATTCCGCGACTGGA---AGATTGTGCGGGTGC 412
consensus_5198#1 CCCCAAAAGCCCCNGAACTNGGTATGGCCCCCGGTACCAAAATAAAGATTAAACCCCCCG 464
* *** * * * * *** * * * * * ***** *
consensus_5198#0 TGGCCGGAATAGCGATGCGAATATGGGCCGCCAGTGGAGCTGCCCTGCTGTCCGCCTTCC 478
consensus_5198#2 TGGCCGGAATAGCGATGCGGATATGGGCCGCCAGTGGAGCTGCCCTGCTGTCCGCCTTCC 472
consensus_5198#1 TGAGCACAANAGATAT-TACGCATGGCCCCACACAAAAAGCAGNGCACGNCCTGACACAA 523
** * ** ** ** **** ** ** * * * * *
consensus_5198#0 TGATCTACGTGGTGTATGGGGGCTTTTTT-GCCTTCCTGCTACTTTTATTCGCCGTTTCT 537
consensus_5198#2 TGATCTACGTGGTGTATGGGGGCTTTTTTTGCCTTCCTGCTGCTTTTATTCGCCATTTCT 532
consensus_5198#1 T------CGTGGGAAAAAAANCCTGTATACCACTCCNCAAAACACAAAATTATGGTTACC 577
* ***** * ** * * ** * * * * ** *
consensus_5198#0 GGCATTCTGTACCACGCGCAGGACAACCTGCTGTACCATCCGGAGCTGCCGGCCAACTCG 597
consensus_5198#2 GGCATTCTGTACCACGCGCAGGACAACCTGCTGTACCATCCGGAGCTGCCGGCCAACTCG 592
consensus_5198#1 NNANTANNATNCCGCCNGCANGGCAAAC--CTTTAGGGGCGCAAG--ANCGGACTATATG 633
* * ** * *** * *** * ** ** * ** *** * * *
consensus_5198#0 CGCATCTTCATACCCGTTCCCTCCATGCACGGGCTGCCTTACG-AAACGCTGCACCTGA- 655
consensus_5198#2 CGCATCTTCATACCCGTTCCCTCCATGCACGGGCTGCCTTACG-AAACGCTGCACCTGA- 650
consensus_5198#1 -GTACGGCAGTAGTGGTTTCGTCCTTCTGNGANCCCTAGGAGGCAAACTNTACAGGAANC 692
* * ** *** * *** * * * * * **** * **
consensus_5198#0 -AAACGCGCGATGCCGTCTCACTGCACGCGTTCTGGATCCGGCACCCAGGCGACAAGGGC 714
consensus_5198#2 -AA--------------------------------------------------------- 652
consensus_5198#1 GNAATANACGA-GCAGAATAACAAAGNGNANGCAAACTGCGACACCNAGGATTAGGTGTN 751
*
consensus_5198#0 CGCTACGTGCCAACGATTGTATACTTTCACGGCAATGCCGGCAACATGGGGCACCGGTTG 774
consensus_5198#2 ------------------------------------------------------------
consensus_5198#1 AACG-------------------------------------------------------- 755
consensus_5198#0 CAGAACGCCACCGGCTTCTATCACACGCTTCAGTGCAACGTGCTGATGGTGGAGTACCGC 834
consensus_5198#2 ------------------------------------------------------------
consensus_5198#1 ------------------------------------------------------------
consensus_5198#0 GGGTACGGCCTGTCGACGGGCACGCCAAGCGAGAAAGGCTTCTTTGCCGATGCCCGCTCC 894
consensus_5198#2 ------------------------------------------------------------
consensus_5198#1 ------------------------------------------------------------
consensus_5198#0 GTGCTGGACCATCTATTCAGCCGGCACGATCTGGACCATGGGCAGATCGTGGTGTTTGGC 954
consensus_5198#2 ------------------------------------------------------------
consensus_5198#1 ------------------------------------------------------------
consensus_5198#0 CG 956
consensus_5198#2 --
consensus_5198#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||