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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5201#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1095 fasta sequence
[CCGCGGACGCGTGGGATAGGATATAGGTCAATAGGTCTAGCAAACTGTAAGAAGGACCTTAGCATAATTAGTATGCAGATTGCGAATGCGATCACCGATCCGTCAAAAAGAGAGAGAGAGAGAACAAAACAAAAAACAAGATTGATGATGGTTTTAGAGGCACCGTTTTGTACTGCGTGTGAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCAAATCGAAGATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCCAAACAAACCCTTTTGCCCCTCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCATTAGAGCAGGTGGAAGGTTTAATTGATCGACGGCTGTGCGGAGAAAATCGTACGCTCCAATTAGGCTTGGCGATGTGCACTTGCTGCCTTGGACAGCCCCAATATAAACTGGCAGCATAATCGAACCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAACCACCACCAGCACCGCTCTCTATGCTGTCACTTTCACATGACATGGCACTGAGAGACATGGTTTTGGTTTGCATCTGTTTGCCTTCTTCTTTGCCTGGTGGTGTGCGGCTGGACGGCTTACATAAGCGCCGGTGTGTTGCAGCTGCCGCTGCTCCACAAACTGCCGCTACTGCACCACATAAAACGGTACCACCACCGCCAGGCGCAAGCGCGCGCAACCGGCCTGGGCAAAACAATTCCCAATCCGGTGGCTCCAATTTCCCACCTTCGAGGGGGGATGGTGCACCATAGAATTTGCGGCGGTGGAGGAGAAGCAGGTGCAAACATCAAACCCAAAACCGATGTGGGATGGATGGACGACGGTGTCATTTCGGTTTCGTATGGNTTGGATTTAAAAATTTGTTTTTTCAACGCATTTTCTTGGCTTGGCGGACGCGCGACCTCGCANGCAGAATTGGGTGTTGTGTTGCGTGGAGTANTGTGCAATCGTTTTCGATGTGTGNCCCTTTAATTGTACGCATAATATTT]
[+] EMBL BM626486 [CCGCGGACGCGTGGGATAGGATATAGGTCAATAGGTCTAGCAAACTGTAAGAAGGACCTTAGCATAATTAGTATGCAGATTGCGAATGCGATCACCGATCCGTCAAAAAGAGAGAGAGAGAGAACAAAACAAAAAACAAGATTGATGATGGTTTTAGAGGCACCGTTTTGTACTGCGTGTGAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCAAATCGAAGATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCCAAACAAACCCTTTTGCCCCTCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCATTAGAGCAGGTGGAAGGTTTAATTGATCGACGGCTGTGCGGAGAAAATCGTACGCTCCAATTAGGCTTGGCGATGTGCACTTGCTGCCTTGGACAGCCCCAATATAAACTGGCAGCATAATCGAACCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGC ]
[+] EMBL BX624650 [ TACGCTCCAATTAGGCTTGGCGATGTGCACTTGCTGCCTTGGACAGCCCCAATATAAACTGGCAGCATAATCGAACCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAACCACCACCAGCACCGCTCTCTATGCTGTCACTTTCACATGACATGGCACTGAGAGACATGGTTTTGGTTTGCATCTGTTTGCCTTCTTCTTTGCCTGGTGGTGTGCGGCTGGACGGCTTACATAAGCGCCGGTGTGTTGCAGCTGCCGCTGCTCCACAAACTGCCGCTACTGCACCACATAAAACGGTACCACCACCGCCAGGCGCAAGCGCGCGCAACCGGCCTGGGCAAAACAATTCCCAATCCGGTGGCTCCAATTTCCCACCTTCGAGGGGGGATGGTGCACCATAGAATTTGCGGCGGTGGAGGAGAAGCAGGTGCAAACATCAAACCCAAAACCGATGTGGGATGGATGGACGACGGTGTCATTTCGGTTTCGTATGGNTTGGATTTAAAAATTTGTTTTTTCAACGCATTTTCTTGGCTTGGCGGACGCGCGACCTCGCANGCAGAATTGGGTGTTGTGTTGCGTGGAGTANTGTGCAATCGTTTTCGATGTGTGNCCCTTTAATTGTACGCATAATATTT]
consensusID : consensus_5201#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence
[CAGAATCCCCCGACGTTACAATATAAACTGGCAGCATAATCGACAGAATTGTACTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAACCACCACCAGCACCGCTCTCTATGCTGTCACTTTCACATGACATGGCACTGAGAGACATGGTTTGGTTTGCATCTGTTTGCCTTCTTCTTTGCCTGGTGGTGTGCGGCTGGACGGTTACATAAGCGCCGGTGTGTTGCACTGCCGCTGCTCCACAAACTGCCGCTACTGCACCACATAAAACGGTACCACCACCGCCAGGCGCAAGCGCGCGCAACCGGCTGGGCAAAACAATTCCCAATCCGGTGGCTCCAATTTCCCACCTTCGAGGGGGGATGGTGCACCATAGAATTTGCGGCGGTGGAGGAGAAGCAGGTGCAAACATCAAACCCAAAACCGATGTGNGGATGGCATGGACGACGGTGTCATTTCGGTTTCGTATGGTTTGGATTTAAAAATTGTTTCTCTTCACCGCATTTTCTTGGCCTTGNGCCGGACGCGCGACCTCGCCNGCGCCAGCANATNGNGTGTCGTGTT]
[+] EMBL AL695406 [CAGAATCCCCCGACGTTACAATATAAACTGGCAGCATAATCGACAGAATTGTACTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAACCACCACCAGCACCGCTCTCTATGCTGTCACTTTCACATGACATGGCACTGAGAGACATGGTTTGGTTTGCATCTGTTTGCCTTCTTCTTTGCCTGGTGGTGTGCGGCTGGACGGTTACATAAGCGCCGGTGTGTTGCACTGCCGCTGCTCCACAAACTGCCGCTACTGCACCACATAAAACGGTACCACCACCGCCAGGCGCAAGCGCGCGCAACCGGCTGGGCAAAACAATTCCCAATCCGGTGGCTCCAATTTCCCACCTTCGAGGGGGGATGGTGCACCATAGAATTTGCGGCGGTGGAGGAGAAGCAGGTGCAAACATCAAACCCAAAACCGATGTGNGGATGGCATGGACGACGGTGTCATTTCGGTTTCGTATGGTTTGGATTTAAAAATTGTTTCTCTTCACCGCATTTTCTTGGCCTTGNGCCGGACGCGCGACCTCGCCNGCGCCAGCANATNGNGTGTCGTGTT]
consensusID : consensus_5201#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence
[CCGCCCACGCGTCCGGATTGATGATGGTTTTAAAGGCACCGTTTTGTACTGCGTGTGAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCTAATCGAAGATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCAAAACAAACCCTTTTGCCCATCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCATTAGAGCAGGTTGGTGGAAGGTTTAATTGATCGACGGTTGTGCGGAGAAAATCGTACGCTCCAATTAGGCTTGGCGATGTGCACTTGCTGCCTTGGACAGCCCCAATATAAACTGGCAGCATAATCGAAGCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAAACCACCACCAGCACCGCTCTCTA]
[+] EMBL BM575060 [CCGCCCACGCGTCCGGATTGATGATGGTTTTAAAGGCACCGTTTTGTACTGCGTGTGAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCTAATCGAAGATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCAAAACAAACCCTTTTGCCCATCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCATTAGAGCAGGTTGGTGGAAGGTTTAATTGATCGACGGTTGTGCGGAGAAAATCGTACGCTCCAATTAGGCTTGGCGATGTGCACTTGCTGCCTTGGACAGCCCCAATATAAACTGGCAGCATAATCGAAGCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAAACCACCACCAGCACCGCTCTCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5201#0 CCGCGGACGCGTGGGATAGGATATAGGTCAATAGGTCTAGCAAACTGTAAGAAGGACCTT 60
consensus_5201#2 ------------------------------------------------------------
consensus_5201#1 ----------------CAGAATCCCCCGACGTTACAATATAAACTGGCAGCATAATCGAC 44
consensus_5201#0 AGCATAATTAGTATGCAGATTGCGAATGCGATCACCGATCCGTCAAAAAGAGAGAGAGAG 120
consensus_5201#2 ------------------------------------------------------------
consensus_5201#1 AGAATTGTACTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAA 104
consensus_5201#0 AGAACAAAACAAAAAACAAGATTGATGATGGTTTTAGAGGCACCGTTTTGTACTGCGTGT 180
consensus_5201#2 ----CCGCCCACGCGTCCGGATTGATGATGGTTTTAAAGGCACCGTTTTGTACTGCGTGT 56
consensus_5201#1 TTTCTCCCTCTTGCCGACAAACCACCACCAGCACCGCTCTCTATGCTGTCACTTTCACAT 164
* * * * * * * * * *
consensus_5201#0 GAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCAAATCGAA 240
consensus_5201#2 GAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCTAATCGAA 116
consensus_5201#1 GACATGGCACTGAGAGACATGGTTTGGTTTGCATCTGTTTGC-CTTCTTCTTTGCCTGGT 223
** * * *** *** * * ** * * ****** *** * *
consensus_5201#0 GATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCC 300
consensus_5201#2 GATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCA 176
consensus_5201#1 GGTGT-GCGGCTGGACGGT-TACATAAGCG---CCGGTGTGTTGCACTGCCGCTGCTCCA 278
* * * ** ** ** ***** * *** * * *** ** * * *
consensus_5201#0 -AAACAAACCCTTTTGC-CCCTCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCA 358
consensus_5201#2 -AAACAAACCCTTTTGC-CCATCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCA 234
consensus_5201#1 CAAACTGCCGCTACTGCACCACATAAAACGG-TACCACCACCGCCAGGCGCAAGCGCGCG 337
**** * ** *** ** * * ********* **** ** ** **
consensus_5201#0 T-----------TAGAGCAGGT-------GGAAGGTTTAATTGATCGACGGCTGTGCGGA 400
consensus_5201#2 T-----------TAGAGCAGGTT---GGTGGAAGGTTTAATTGATCGACGGTTGTGCGGA 280
consensus_5201#1 CAACCGGCTGGGCAAAACAATTCCCAATCCGGTGGCTCCAATTTCCCACCTTCGAGGGGG 397
* * ** * * ** * * * * ** * * **
consensus_5201#0 GAAAATCGTACGCTCCAATTAGGCTTGGCG-ATGTGCACTTGCTGCCTTGGACAGCCCCA 459
consensus_5201#2 GAAAATCGTACGCTCCAATTAGGCTTGGCG-ATGTGCACTTGCTGCCTTGGACAGCCCCA 339
consensus_5201#1 GATGGT-GCACCATAGAATTTGCGGCGGTGGAGGAGAAGCAGGTGCAAACATCAAACCCA 456
** * * ** * **** * ** * * * * * * *** ** ****
consensus_5201#0 ATATAAACTGGCAGCATAATCGAACCAGAATTGTACCTGTCTGTGTGCTTGTGTGTG--C 517
consensus_5201#2 ATATAAACTGGCAGCATAATCGAAGCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGTGC 399
consensus_5201#1 AAACCGA-TGTGNGGATGGCATGGACGACGGTGT-CATTTCGGTTTCGTATGGTTTGGAT 514
* * * ** * ** * *** * * ** ** * * ** **
consensus_5201#0 TTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAA-CCACC--AC 574
consensus_5201#2 TTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAAACCACC--AC 457
consensus_5201#1 TTAAAAAT-TGTTTCTCTTCACCGCATTTTCTTGGCCTTGNGCCGGACGCGCGACCTCGC 573
** * *** ***** * ** * * *** **** * *** *
consensus_5201#0 CAGCACCGCTCTCTATGCTGTCACTTTCACATGACATGGCACTGAGAGACATGGTTTTGG 634
consensus_5201#2 CAGCACCGCTCTCTA--------------------------------------------- 472
consensus_5201#1 CNGCGCCAGCANATNGNGTGTCGTGTT--------------------------------- 600
* ** ** *
consensus_5201#0 TTTGCATCTGTTTGCCTTCTTCTTTGCCTGGTGGTGTGCGGCTGGACGGCTTACATAAGC 694
consensus_5201#2 ------------------------------------------------------------
consensus_5201#1 ------------------------------------------------------------
consensus_5201#0 GCCGGTGTGTTGCAGCTGCCGCTGCTCCACAAACTGCCGCTACTGCACCACATAAAACGG 754
consensus_5201#2 ------------------------------------------------------------
consensus_5201#1 ------------------------------------------------------------
consensus_5201#0 TACCACCACCGCCAGGCGCAAGCGCGCGCAACCGGCCTGGGCAAAACAATTCCCAATCCG 814
consensus_5201#2 ------------------------------------------------------------
consensus_5201#1 ------------------------------------------------------------
consensus_5201#0 GTGGCTCCAATTTCCCACCTTCGAGGGGGGATGGTGCACCATAGAATTTGCGGCGGTGGA 874
consensus_5201#2 ------------------------------------------------------------
consensus_5201#1 ------------------------------------------------------------
consensus_5201#0 GGAGAAGCAGGTGCAAACATCAAACCCAAAACCGATGTGGGATGGATGGACGACGGTGTC 934
consensus_5201#2 ------------------------------------------------------------
consensus_5201#1 ------------------------------------------------------------
consensus_5201#0 ATTTCGGTTTCGTATGGNTTGGATTTAAAAATTTGTTTTTTCAACGCATTTTCTTGGCTT 994
consensus_5201#2 ------------------------------------------------------------
consensus_5201#1 ------------------------------------------------------------
consensus_5201#0 GGCGGACGCGCGACCTCGCANGCAGAATTGGGTGTTGTGTTGCGTGGAGTANTGTGCAAT 1054
consensus_5201#2 ------------------------------------------------------------
consensus_5201#1 ------------------------------------------------------------
consensus_5201#0 CGTTTTCGATGTGTGNCCCTTTAATTGTACGCATAATATTT 1095
consensus_5201#2 -----------------------------------------
consensus_5201#1 -----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||