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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5205#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1446 fasta sequence
[CGACCCACGCGTCCGTTGATTTACTGCTCTCTTTTTTTTTTTTAATCACACTATGCTGGAGTCTTTGTTTGTCACCTTGTGTAACAACAAACACTAGCTCAGCTAACCAGCCATAATAAGGTGGAGAACGTGAGGCAAACAGCAAATAAAGAACAGTAGAGTTTGATACCTGCTCTTATGGCTATACTTAGCGAACGTTTGATAGTGAAAACAAAGCCACACAAATAGCATCTGCAAACGAACAACACTGGAATGCTACATTGGAAGAGCTGCGCACCGTGGGAAAGAGATAACAGCGAGGAGTAAACTGCGCATAAAGTGTGAGGTATACACTTAAAACATTAAACAAATGAAAAACAAAAGCCCTAGACGAGTATGTTATATGATAAAACAAAATGGTAAATGATACAGCAACAAACAAAACAAAGAAGAAACAATTCACACATATCAATTTCGTGCCCGATCATATTTGAACGATAAAGTAGAGAAGAGAAGATTAAACAAATAACCTTTACTGCTGCCAGGTGAAGGCAACACATTCTTATTAAGGAAGGTTAATATAGTGAAGTAAAACAGTAAGAGTCTATGAAAGCCACTAAACATGTGAAATCAATGGTGTAACAAAATACTAAACTAAGCAAACAACACACAAAAGCAAACAAAAAACAAGCATACATACACACGCAAAATGCAGCAGACATTAAACATTAAAAACAGAATACAACATTGAATTACAAAAAAAAAATCTGTATGATGCAAATGGCAAAAGAGGATGATAGAGGAAGCAAAAAAAAACATTTTAGAATATTAAACGTTAACGATGTTGTAATGAAATGATGTGTCGTGATGAAAAAAAAATACATTTATATTCAAAGTTTGATAACAAGAAGAGCAAATATGACACGTAGGCATGTAGCGATAATGGGGATGGAGAGCAACAACAAAAAAAAGAAACTTATTAGCTAGATATACTGTGAACAAAAACAACAAAGATGAACCGCAACAGGCATGATAGACCTGCCTATGGTATTTTATTGCCTATACATCTTCCCGATGGCAGTAGGCGCGTGTAGTGTGTAATCTAAGCAGGCNCAGCGACAGAGATGGAACGGAGTAGTCACTAAGTTACTTGNCTTNTACTATTTCTACAACATTTAACTCTNTAATTTCAAAACCCCCTATATATACAAATATTCGGGTGATTGACACCGCTTGCTCGCACTCTAGGAGGCTATGGAAAACTGGTCCTTAGACCAACACACCATCACNNAGCANACAAACACACCACCACCCGGCCCTACACACGCCCACCAGGGGGAACGAACCACACGACACACACCACNCCACACACACGNACCANCACCCCCNCNAAGCCCACCCACGGCGCAACAANCTGGCCGAACAAACNCCTAACGACAGCNCGANGACCGANCNTAACAACCCTCC]
[+] EMBL BM641634 [CGACCCACGCGTCCGTTGATTTACTGCTCTCTTTTTTTTTTTTAATCACACTATGCTGGAGTCTTTGTTTGTCACCTTGTGTAACAACAAACACTAGCTCAGCTAACCAGCCATAATAAGGTGGAGAACGTGAGGCAAACAGCAAATAAAGAACAGTAGAGTTTGATACCTGCTCTTATGGCTATACTTAGCGAACGTTTGATAGTGAAAACAAAGCCACACAAATAGCATCTGCAAACGAACAACACTGGAATGCTACATTGGAAGAGCTGCGCACCGTGGGAAAGAGATAACAGCGAGGAGTAAACTGCGCATAAAGTGTGAGGTATACACTTAAAACATTAAACAAATGAAAAACAAAAGCCCTAGACGAGTATGTTATATGATAAAACAAAATGGTAAATGATACAGCAACAAACAAAACAAAGAAGAAACAATTCACACATATCAATTTCGTGCCCGATCATATTTGAACGATAAAGTAGAGAAGAGAAGATTAAACAAATAACCTTTACTGCTGCCAGGTGAAGGCAACACATTCTTATTAAGGAAGGTTA ]
[+] EMBL BX627094 [ GAACAACGCTGAAAAGCTACATTGGAAGAGCTGCACACCGTGAGAAAGAGATAACAGCGAGGAATAAACTGTGCATAAAGTGTGAGGTAGACACTTAAAACATTAAACAAATGAAAAACAAAAGCCCTAGACGAGTATGTTATATGATAAAACAAAATGGTAAATGATACAGCAACAAACAAAACAAAGAAGAAACAATTCACACATATCAATTTCGTGCCCGATCATATTTGAACGATAAAGTAGAGAAGAGAAGATTAAACAAATAACCTTTACTGCTGCCAGGTGAAGGCAACACATTCTTATTAAGGAAGGTTAATATAGTGAAGTAAAACAGTAAGAGTCTATGAAAGCCACTAAACATGTGAAATCAATGGTGTAACAAAATACTAAACTAAGCAAACAACACACAAAAGCAAACAAAAAACAAGCATACATACACACGCAAAATGCAGCAGACATTAAACATTAAAAACAGAATACAACATTGAATTACAAAAAAAAAATCTGTATGATGCAAATGGCAAAAGAGGATGATAGAGGAAGCAAAAAAAAACATTTTAGAATATTAAACGTTAACGATGTTGTAATGAAATGATGTGTCGTGATGAAAAA ]
[+] EMBL AL695438 [ ccccggnttAATGGCAAAAGAGGATGATAGCGGAAGC AAAAANAANATTTTAGAATATTAAACGTTAACGATGTTGTAATGAAATGATGTGTCGTGATGAAAAAAAAATACATTTATATTCAAAGTTTGATAACAAGAAGAGCAAATATGACACGTAGGCATGTAGCGATAATGGGGATGGAGAGCAACAACAAAAAAAAGAAACTTATTAGCTAGATATACTGTGAACAAAAACAACAAAGATGAACCGCAACAGGCATGATAGACCTGCCTATGGTATTTTATTGCCTATACATCTTCCCGATGGCAGTAGGCGCGTGTAGTGTGTAATCTAAGCAGGCNCAGCGACAGAGATGGAACGGAGTAGTCACTAAGTTACTTGNCTTNTACTATTTCTACAACATTTAACTCTNTAATTTCAAAACCCCCTATATATACAAATATTCGGGTGATTGACACCGCTTGCTCGCACTCTAGGAGGCTATGGAAAACTGGTCCTTAGACCAACACACCATCACNNAGCANACAAACACACCACCACCCGGCCCTACACACGCCCACCAGGGGGAACGAACCACACGACACACACCACNCCACACACACGNACCANCACCCCCNCNAAGCCCACCCACGGCGCAACAANCTGGCCGAACAAACNCCTAACGACAGCNCGANGACCGANCNTAACAACCCTCC]
consensusID : consensus_5205#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence
[CCGGGCTTTTGTTACACCCTGTTTTACCCCTGTCTCTAAGCGAGTGGGTGTTCCCCGCGTAAGCCACGCTTCAAGCGCTTCAACCTAAACGGTGCGAGCTTCGCTAAAGCGCTTCAGCAGCGCTTCACTTGTTTATGTGTTAGCACATCTAGCACCACGAACAAACGCTTACGACGTGGCGCACGAGAACGTCCCCTTTTCACGAAATGCCTTTCACAACTAGCCTAAGTTCTCTTGATATAGAAAAAAACGTTACGTTATCTTTTTAATGGGGTTTTACCCCCTTTCCCGATGGAAAGCTACGAGGGCAGAGTTGGAGTTCTTCTATTCGTTTGGATGTTTTGTTATTTGCTTTTTCCATCCCTCCCCATTTTATGGCGTTATGGCCTTTATTCGGGTACGGTAGCAAGTAAGTATAACCCAAACATAAAACGATGAAAAAGAACTTAATACAGATGTCGTGTGTATTTGATATGCGTGTATGCTTTATGTGAGTGTGTTTGTATTTGTGCGTGTAGTGGAAGTTGAAGACATATTTCCAAGGAAAATGCAGGAAATAATGAACAAACTGCATGCAAATTTGTTAAAAGTCCATTGATTTACTGCTCTCTTTTTTTTTTTTAATCACACTATGCTGGAGTCTTTGTTTGTCACCTTGTGTAACAA]
[+] EMBL BM578240 [CCGGGCTTTTGTTACACCCTGTTTTACCCCTGTCTCTAAGCGAGTGGGTGTTCCCCGCGTAAGCCACGCTTCAAGCGCTTCAACCTAAACGGTGCGAGCTTCGCTAAAGCGCTTCAGCAGCGCTTCACTTGTTTATGTGTTAGCACATCTAGCACCACGAACAAACGCTTACGACGTGGCGCACGAGAACGTCCCCTTTTCACGAAATGCCTTTCACAACTAGCCTAAGTTCTCTTGATATAGAAAAAAACGTTACGTTATCTTTTTAATGGGGTTTTACCCCCTTTCCCGATGGAAAGCTACGAGGGCAGAGTTGGAGTTCTTCTATTCGTTTGGATGTTTTGTTATTTGCTTTTTCCATCCCTCCCCATTTTATGGCGTTATGGCCTTTATTCGGGTACGGTAGCAAGTAAGTATAACCCAAACATAAAACGATGAAAAAGAACTTAATACAGATGTCGTGTGTATTTGATATGCGTGTATGCTTTATGTGAGTGTGTTTGTATTTGTGCGTGTAGTGGAAGTTGAAGACATATTTCCAAGGAAAATGCAGGAAATAATGAACAAACTGCATGCAAATTTGTTAAAAGTCCATTGATTTACTGCTCTCTTTTTTTTTTTTAATCACACTATGCTGGAGTCTTTGTTTGTCACCTTGTGTAACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5205#0 CGACCCACGCGTCCGTTGATTTACTGCTCTCTTTTTTTTTTTTAATCACACTATGCTGGA 60
consensus_5205#1 ------------------------------------------------------------
consensus_5205#0 GTCTTTGTTTGTCACCTTGTGTAACAACAAACACTAGCTCAGCTAACCAGCCATAATAAG 120
consensus_5205#1 ------------------------------------------------------------
consensus_5205#0 GTGGAGAACGTGAGGCAAACAGCAAATAAAGAACAGTAGAGTTTGATACCTGCTCTTATG 180
consensus_5205#1 ------------------------------------------------------------
consensus_5205#0 GCTATACTTAGCGAACGTTTGATAGTGAAAACAAAGCCACACAAATAGCATCTGCAAACG 240
consensus_5205#1 ------------------------------------------------------------
consensus_5205#0 AACAACACTGGAATGCTACATTGGAAGAGCTGCGCACCGTGGGAAAGAGATAACAGCGAG 300
consensus_5205#1 ------------------------------------------------------------
consensus_5205#0 GAGTAAACTGCGCATAAAGTGTGAGGTATACACTTAAAACATTAAACAAATGAAAAACAA 360
consensus_5205#1 ------------------------------------------------------------
consensus_5205#0 AAGCCCTAGACGAGTATGTTATATGATAAAACAAAATGGTAAATGATACAGCAACAAACA 420
consensus_5205#1 ------------------------------------------------------------
consensus_5205#0 AAACAAAGAAGAAACAATTCACACATATCAATTTCGTGCCCGATCATATTTGAACGATAA 480
consensus_5205#1 ------------------------------------------------------------
consensus_5205#0 AGTAGAGAAGAGAAGATTAAACAAATAACCTTTACTGCTGCCAGGTGAAGGCAACACATT 540
consensus_5205#1 -----CCGGGCTTTTGTTACACCCTGTTTTACCCCTGTCTCTAAGCGAGTGGGTGTTCCC 55
* *** ** *** * * * ** *
consensus_5205#0 CTTATTAAGGAAGGTTAATATAGTG-AAGTAAAACAGTAAGAGTCT-ATGAAAGCCACTA 598
consensus_5205#1 CGCGTAAGCCACGCTTCAAGCGCTTCAACCTAAACGGTGCGAGCTTCGCTAAAGCGCTTC 115
* * * * * ** * * ** **** ** *** * ***** *
consensus_5205#0 AACATGTGAAATCAATGGTGTAACAAAATACTAAACTAAGCAAACAACACACAAAAGCAA 658
consensus_5205#1 AGCA-GCGCT-TCACTTGTTTA-TGTGTTAGCACATCTAGCA--CCACGAACAAACGCTT 170
* ** * * *** * ** ** ** * * **** * ** ***** **
consensus_5205#0 ACAAAAAACAAGCATACATACACACGCAAAATGCAGCAGACATTAAACATTAAAAACAGA 718
consensus_5205#1 ACGACGT---GGCGCACGAGAACGTCCCCTTTTCACGAAATGCC---TTTCACAACTAGC 224
** * ** ** ** * * ** * * * * ** **
consensus_5205#0 ATACAACATTGAATTACAAAAAAAAAATCTGTATGATGCAAATGGCAAAAGAGGATGATA 778
consensus_5205#1 CTAAGTTCTCTTGATATAGAAAAAAACGTTACGTTATCT---TTTTAATGGGGTTTTACC 281
** * ** * ******* * * ** * ** * * * *
consensus_5205#0 GAGGAAGCAAAAAAAAACATTTTAGAATATTAAACGTTAACGATGTTGTAATGAAATGAT 838
consensus_5205#1 CCCTTTCCCGATGGAAAGCTACGAGGGCA----GAGTTGGAGTTCTTCTATTCGTTTGG- 336
* * *** * ** * *** * * ** ** * **
consensus_5205#0 GTGTCGTGATGAAAAAAAAATACATTTATATTCAAAGTTTGATAACAAGAAGAGCA--AA 896
consensus_5205#1 ATGTTTTGTTATTTGCTTTTTCCATCCCTCCCCA---TTTTATGGCGTTATGGCCTTTAT 393
*** ** * * *** * ** *** ** * * * * *
consensus_5205#0 TATGACACGTAGGCATGTAGCGATAATGGGGATGGAGAGCAACAACAAAAAAAAGAAACT 956
consensus_5205#1 TCGGGTACGGTAGCAAGTAAGTATAACCCAAACATAAAACGATGA------AAAAGAACT 447
* * *** *** *** **** * * * * * * *** ****
consensus_5205#0 TATTAGCTAGATATACTGTGAACAAAAACAACAAAGATGAACCGCAACAGGCATGATAG- 1015
consensus_5205#1 TAATA--CAGATGTCGTGTGTATTTGATATGCGTGTATGCTTTATG-TGAGTGTGTTTGT 504
** ** **** * **** * * * *** * ** * *
consensus_5205#0 ACCTGCCTATGGTATTTTATTGCCTATACATCTTCCCGATGGCAGTAGGCGCGTGTAGTG 1075
consensus_5205#1 ATTTGTGCGTG-TAGTGGAAGTTGAAGACATATTTCCAAGGAAAAT-GCAGGAAATAATG 562
* ** ** ** * * * **** ** ** * * * * * * ** **
consensus_5205#0 TGTAATCTAAGCAGGCNCAGCGACAGAGATGGAACGGAGTAGTCACTAAGTTACTTGNCT 1135
consensus_5205#1 AACAAACT--GCATGCAAATTTGTTAAAAGTCCATTGATTTACTGCT----CTCTTTTTT 616
** ** *** ** * * * * ** * ** *** *
consensus_5205#0 TNTACTATTTCTACAACATTTAACTCTNTAATTTCAAAACCCCCTATATATACAAATATT 1195
consensus_5205#1 TTTTTTAATCACACTATGCTGGAGTCTTTGTTTGT----CACCTTGTGTA-ACAA----- 666
* * ** * ** * * * *** * ** * ** * * ** ****
consensus_5205#0 CGGGTGATTGACACCGCTTGCTCGCACTCTAGGAGGCTATGGAAAACTGGTCCTTAGACC 1255
consensus_5205#1 ------------------------------------------------------------
consensus_5205#0 AACACACCATCACNNAGCANACAAACACACCACCACCCGGCCCTACACACGCCCACCAGG 1315
consensus_5205#1 ------------------------------------------------------------
consensus_5205#0 GGGAACGAACCACACGACACACACCACNCCACACACACGNACCANCACCCCCNCNAAGCC 1375
consensus_5205#1 ------------------------------------------------------------
consensus_5205#0 CACCCACGGCGCAACAANCTGGCCGAACAAACNCCTAACGACAGCNCGANGACCGANCNT 1435
consensus_5205#1 ------------------------------------------------------------
consensus_5205#0 AACAACCCTCC 1446
consensus_5205#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||