|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1088 fasta sequence
[CAGAATCCCCGAGGTTAATATCAAAACTGACACGATAACTGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACCAGCGCATCATAGACGCGGCGACCTTACCAAACTATACATGCAGGGACATTCTTAGAGGAGCCCGTGCAGCGATATTCATCGACAACGATACGAAATGAGAATGTTCGCATGCCAACCGCTAATTTTACTAGAAGACGGAGCGGTGGCAACGAGCGCTTCAAACTAGAGAGCGTTCGACCGAGGNGATGACTATGGCGGCAACAGGACTAACCGGGAAGAAACCCAATATAAGTACACACGTTCAACTNGGNCGCATCGCTAGGAAGTAACATTGGGAGGGACAANATCGGTCACCCAANCAAGACCATGGCATTGACACTGGGTTCGGTACATAGGGAGCCCNGGAAACTNTCTTCAAAACACTCTTGGCAACAGGAAGGTTCCTTTGGAAAAATACGGNGCAAGANACATAGGGNAGGGCGTACAGGCGGCTATATCAACNACGGGAAGGGGGGGAATNTNNATCACCCCGGACGTCAACAAAAGACCCGCAAAAGACAANTGGAGCNCACAACCATATNCGGAGCGTNACNTCACAAATANNCNTANAANCCNNGCTACATATCCCCATGGNACTGGACCACCCAAAGTNATAACGTANAACACCATGGCCCGCNAAGTTGGGCCCANGTGAGCCGACACACCACAACGCGAAAAACATCACTAANAATNAGGGACTAGTGGAAAAGACCCAAAACGAACCNGAGNCCAAAGGAGGGGCCGGGCGCAACGNGCCCACAACTANGGGCGGNCACAATACAACAACCGCCAGCCGAAGCAAAANCNAACCCACACACCCACCACAAGCCNACNTAAAGCACCCCCCACANACAACGAAACNCCAGACACCCACGGCCCGAAGCGCAGACANCGACAACAATCACATCGGGCGCNAACGNCCAGACACCGCAACATCCCACCGAGGGCCACTCCAAACGNCGCACGACCGGGACCCTACAGCAGANAANATCNNACGACAACCAAGNGGACCAAAGACAGGGGGA]
[+] EMBL AL695588 [CAGAATCCCCGAGGTTAATATCAAAACTGACACGATAACTGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACCAGCGCATCATAGACGCGGCGACCTTACCAAACTATACATGCAGGGACATTCTTAGAGGAGCCCGTGCAGCGATATTCATCGACAACGATACGAAATGAGAATGTTCGCATGCCAACCGCTAATTTTACTAGAAGACGGAGCGGTGGCAACGAGCGCTTCAAACTAGAGAGCGTTCGACCGAGGNGATGACTATGGCGGCAACAGGACTAACCGGGAAGAAACCCAATATAAGTACACACGTTCAACTNGGNCGCATCGCTAGGAAGTAACATTGGGAGGGACAANATCGGTCACCCAANCAAGACCATGGCATTGACACTGGGTTCGGTACATAGGGAGCCCNGGAAACTNTCTTCAAAACACTCTTGGCAACAGGAAGGTTCCTTTGGAAAAATACGGNGCAAGANACATAGGGNAGGGCGTACAGGCGGCTATATCAACNACGGGAAGGGGGGGAATNTNNATCACCCCGGACGTCAACAAAAGACCCGCAAAAGACAANTGGAGCNCACAACCATATNCGGAGCGTNACNTCACAAATANNCNTANAANCCNNGCTACATATCCCCATGGNACTGGACCACCCAAAGTNATAACGTANAACACCATGGCCCGCNAAGTTGGGCCCANGTGAGCCGACACACCACAACGCGAAAAACATCACTAANAATNAGGGACTAGTGGAAAAGACCCAAAACGAACCNGAGNCCAAAGGAGGGGCCGGGCGCAACGNGCCCACAACTANGGGCGGNCACAATACAACAACCGCCAGCCGAAGCAAAANCNAACCCACACACCCACCACAAGCCNACNTAAAGCACCCCCCACANACAACGAAACNCCAGACACCCACGGCCCGAAGCGCAGACANCGACAACAATCACATCGGGCGCNAACGNCCAGACACCGCAACATCCCACCGAGGGCCACTCCAAACGNCGCACGACCGGGACCCTACAGCAGANAANATCNNACGACAACCAAGNGGACCAAAGACAGGGGGA]
consensusID : consensus_5213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 887 fasta sequence
[AAGAATCCCCCCGAGGTTTTCACAGGCAAGACATCTCAGTTGATCATAGTCAAATATCAAAACTGACACGATAATGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACCAGCGCATCATAGACGCGGCGACCTTACCAAACTATCATGCAGGGACATTCTTAGAGGAGCCCGTGCAGCGATATTCATCGAAAGATAGAAATGAGAATGTTCGCATGCCAACCGCTAATTTTATAGAAGACGGAGCGGTGGAACGAGCGCTTCAAATAGAGAGCGTTCGACGAGAGATGAATATGGCGGCAACGGCTACCGGAGACCCATTAGTCGACGTCACTGGCGATGCTGAGTACATGGAGGAAATGTACAAAAGCCTGCATGAATGGTTGTATGGACCCGACTTCTCAACCTCTGAAGAGTCTGAATCGCAGATTGTGTTGGTTACAGAGGATTTCCCGCTAAAGCCAGATGGCACTCGGGATTTTTCTTCGTTTCCTGGCGCCCATTTATTAGCTGCGAGTGCTGGAACACTACTTATTGGTGGAGCAGTCGGAGGCGGCGCATGGTATTACCGAAAACAAAAAATACCCAA-ATCACTGTTGAAGA-TTGGAAGAAGATCCGGCTATGATTGTCTCGGATCACACAGTAGAGGATTCTTCTCAGAACATCGTGAGTTGAGTCGCAGACGAAGTAACACATTAACATCTCGCTACAAGAATAATCGANATGTTTAGAACTAGAACTTTTAAGCTGCGTTTTTAAGGAGCGTCATGACTGGACACTGCAGTCCATCGAGGTTTCAACCTTTTAGAGCGCTCAAGACCCACTCAGGGTTTATAAGGTGCCGCAAACACTGTAAAAGCATAAAATTCATGGNAAAAA]
[+] EMBL AL930319 [AAGAATCCCCCCGAGGTTTTCACAGGCAAGACATCTCAGTTGATCATAGTCAAATATCAAAACTGACACGATAATGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACCAGCGCATCATAGACGCGGCGACCTTACCAAACTATCATGCAGGGACATTCTTAGAGGAGCCCGTGCAGCGATATTCATCGAAAGATAGAAATGAGAATGTTCGCATGCCAACCGCTAATTTTATAGAAGACGGAGCGGTGGAACGAGCGCTTCAAATAGAGAGCGTTCGACGAGAGATGAATATGGCGGCAACGGCTACCGGAGACCCATTAGTCGACGTCACTGGCGATGCTGAGTACATGGAGGAAATGTACAAAAGCCTGCATGAATGGTTGTATGGACCCGACTTCTCAACCTCTGAAGAGTCTGAATCGCAGATTGTGTTGGTTACAGAGGATTTCCCGCTAAAGCCAGATGGCACTCGGGATTTTTCTTCGTTTCCTGGCGCCCATTTATTAGCTGCGAGTGCTGGAACACTACTTATTGGTGGAGCAGTCGGAGGCGGCGCATGGTATTACCGAAAACAAAAAATACCCAA ATCACTGTTGAAGA TTGGAAGAAGATCCGGCTATGATTGTCTCGGATCACACAGTAGAGGATTCTTCTCAGAACATCGTGAGTTGAGTCGCAGACGAAGTAACACATTAACATCTCGCTACAAGAATAATCGANATGTTTAGAACTAGAACTTTTAAGCTGCGTTTTTAAGGAGCGTCATGACTGGACACTGCAGTCCATCGAGGTTTCAACCTTTTAGAGCGCTCAAGACCCACTCAGGGTTTATAAGGTGCCGCAAACACTGTAAAAGCATAAAATTCATGGNAAAAA]
[+] EMBL BM621550 [ ccgCAAAACTGACACGATAATGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACCAGCGCATCATAGACGCGGCGACCTTACCAAACTATCATGCAGGGACATTCTTAGAGGAGCCCGTGCAGCGATATTCATCGAAAGATAGAAATGAGAATGTTCGCATGCCAACCGCTAATTTTATAGAAGACGGAGCGGTGGAACGAGCGCTTCAAATAGAGAGCGTTCGACGAGAGATGAATATGGCGGCAACGGCTACCGGAGACCCATTAGTCGACGTCACTGGCGATGCTGAGTACATGGAGGAAATGTACAAAAGCCTGCATGAATGGTTGTATGGACCCGACTTCTCAACCTCTGAAGAGTCTGAATCGCAGATTGTGTTGGTTACAGAGGATTTCCCGCTAAAGCCAGATGGCACTCGGGATTTTTCTTCGTTTCCTGGCGCCCATTTATTAGCTGCGAGTGCTGGAACACTACTTATTGGTGGAGCAGTCGGAGGCGGCGCATGGTATTACCGAAAACAAAAAATACCCAACATCACTGTTGAAGATTTGGAAGAAGATCCGGCTATGATTGTCTCGGATCACACAGTAGAGGATTCTTCTCAGAACATCGTGAGTTGAGTCGCAGACGAA TAA A ATTAACATCTCGCTACAAGAATAATCGA ATGTTTAGA ]
[+] EMBL BM579752 [ TCGCATGCCAACCGCTAATTTTATAGAAGACGGAGCGGTGGAACGAGCGCTTCAAATACAGAGCGTTCGACTAGAGATGAATATGGCGGCAACGGCTACCGGAGACCCATTAGTCGACGTCACTGGCGATGCTGAGTACATGGAGGAAATGTACGAAAGCCTGCATGAATGGTTGTATGGACCCGACTTCTCAACCTCTGAAGAGACTGAATCGCAGATTGTGGTGGTTACAGAGGATTTCCCGCTAAAGCCAGATGGCACTCGGGATTTTTCTTCGCTTCCTGGCGCCCATTTATTAGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5213#0 ------------------------------------CAGAATCCCCGAGGTTAATATCAA 24
consensus_5213#1 AAGAATCCCCCCGAGGTTTTCACAGGCAAGACATCTCAGTTGATCATAGTCAAATATCAA 60
*** * ** ********
consensus_5213#0 AACTGACACGATAACTGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACC 84
consensus_5213#1 AACTGACACGATAA-TGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACC 119
************** *********************************************
consensus_5213#0 AGCGCATCATAGACGCGGCGACCTTACCAAACTATACATGCAGGGACATTCTTAGAGGAG 144
consensus_5213#1 AGCGCATCATAGACGCGGCGACCTTACCAAACTAT-CATGCAGGGACATTCTTAGAGGAG 178
*********************************** ************************
consensus_5213#0 CCCGTGCAGCGATATTCATCGACAACGATACGAAATGAGAATGTTCGCATGCCAACCGCT 204
consensus_5213#1 CCCGTGCAGCGATATTCATCG--AAAGATA-GAAATGAGAATGTTCGCATGCCAACCGCT 235
********************* ** **** *****************************
consensus_5213#0 AATTTTACTAGAAGACGGAGCGGTGGCAACGAGCGCTTCAAACTAGAGAGCGTTCGACCG 264
consensus_5213#1 AATTTTA-TAGAAGACGGAGCGGTGG-AACGAGCGCTTCAAA-TAGAGAGCGTTCGAC-- 290
******* ****************** *************** ***************
consensus_5213#0 AGGNGATGACTATGGCGGCAACAGGACTAACCGGGAAGAAACCCAATATAAGTACACACG 324
consensus_5213#1 GAGAGATGAATATGGCGGCAAC--GGCTACC-----GGAGACCCATTA-----------G 332
* ***** ************ * *** * ** ***** ** *
consensus_5213#0 TTCAACTNGGNCGCATCGCTAGGAAGTAACATTGGGAGGGACAANATCGGTCACCCAANC 384
consensus_5213#1 TCGACGTCACTGGCGATGCTGAGT----ACAT--GGAGGAAATGTACAAA--AGCCTGCA 384
* * * ** *** * **** ***** * * * **
consensus_5213#0 AAGACCATGGCATTGACACTGGGTTCGGTACATAGGGAGCCCNGGAAACTNTCTTCAAAA 444
consensus_5213#1 TGAATGGTTGTATGGAC-CCGACTTCTCAACCT------CTGAAGAGTCTGAATCGCAGA 437
* * * ** *** * * *** ** * * ** ** * * *
consensus_5213#0 CACTCTTGGCAACAGGAAGGTTCCTTTGGAAAAATACGGNGCAAGANACATAGGGNAGGG 504
consensus_5213#1 TTGTGTTGGTTACAG-AGGATTTCCCGCTAAAGCCAGATGGCACTCGGGATTTTTCTTCG 496
* **** **** * * ** * *** * *** ** *
consensus_5213#0 CGTACAGGCGGCTATATCAACNACGGGAAGGGGGGGAATNTNNATCACCCCGGACGTCAA 564
consensus_5213#1 TTTCCTGGCGCCCAT-TTATTAGCTGCGAGTGCTGGAACACTACTTATTGGTGGAGCAGT 555
* * **** * ** * * * * ** * **** * * * *
consensus_5213#0 CAAAAGACCCGCAAAAGACAANTGGAGCNCACAACCATATNCGGAGCGTNACNTCACAAA 624
consensus_5213#1 CGGAGGCGGCGCATGGTATTACCGAAAACAAAAA--ATACCCAAA---TCACTGTTGAAG 610
* * * **** * * * * * ** *** * * * ** **
consensus_5213#0 TANNCNTANAANCCNNGCTACATATCCCCATGGNACTGGACCACCCAAAGTNATAACGTA 684
consensus_5213#1 ATTGGAAGAAGATCCGGCTATGATTGTC--TCGGATCACACAGTAGAGGATTCTT-CTCA 667
* * **** * * * * * ** * * * * *
consensus_5213#0 NAACACCATGGCCCGCNAAGTTG-GGCCCANGTGAGCCGACA-CACCACAACGCGAAAAA 742
consensus_5213#1 GAACATCGTGA---GTTGAGTCGCAGACGAAGTAACACATTAACATCTCGCTACAAGAAT 724
**** * ** * *** * * * * ** * * * ** * * * * **
consensus_5213#0 CATCACTAANAATNAGGGACTAGTGGAAAAGACCCAAAACGAACCNGAGNCCAAAGGAGG 802
consensus_5213#1 AATCG--ANATGTTTAGAACTAG-----AACTTTTAAGCTGCGTTTTTAAGGAGCGTCAT 777
*** * * * ***** ** ** * * *
consensus_5213#0 GGCCGGGCGCAACGNGCCCACAA--CTANGGGCGGNCACAATACAACAACCGCCAGCCGA 860
consensus_5213#1 GACTGGACACTGCAGTCCATCGAGGTTTCAACCTTTTAGAGCGCT-CAAGACCCACTCAG 836
* * ** * * * ** * * * * * * * *** *** *
consensus_5213#0 AGCAAAANCNAACCCACACACCCACCACAAGCCNACNTAAAGCACCCCCCACANACAACG 920
consensus_5213#1 GGTTTATAAGGTGCCGCAAAC--ACTGTAAA--AGCATAAAATTCATGGNAAAAA----- 887
* * ** ** ** ** ** * **** * * * *
consensus_5213#0 AAACNCCAGACACCCACGGCCCGAAGCGCAGACANCGACAACAATCACATCGGGCGCNAA 980
consensus_5213#1 ------------------------------------------------------------
consensus_5213#0 CGNCCAGACACCGCAACATCCCACCGAGGGCCACTCCAAACGNCGCACGACCGGGACCCT 1040
consensus_5213#1 ------------------------------------------------------------
consensus_5213#0 ACAGCAGANAANATCNNACGACAACCAAGNGGACCAAAGACAGGGGGA 1088
consensus_5213#1 ------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||