cluster # 5224

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Anopheles gambiae
cluster # 5224 cluster # 5224 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5224#0 length = 820 sequences # 2

consensus_5224#1 length = 557 sequences # 1
consensus_5224#2 length = 241 sequences # 1

consensusID : consensus_5224#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 820
fasta sequence

                              [GCCCCCGCAGGTCACGTGTGCGGCACACGCAGACCAACGAATTGTAGC-AAACGTGTGATAAATAGGAATAGATTGTGAAAACGGCATAAAAATGAGTAGTGGACAGTTTGACGATGCGCTCGATGATACCACAGAACGCTTTGACGGTGTTCAACTGCAGGAGAAAGCTACGTCTCCTCCCGCCAGCAAAGTGAACGGNACAGCGAAGCTGACCAAAATCGAGATTCAAGATGCACTGTTTGGAGCACCGAATAGGGACGAACCGACGGCGA-CGACGCGCAGTGGGAAGAGTATTACGACGACGAGGAAAGCGACGACGATGATGATTTCTACTGCTACGAGGGTGGAGCAGCTGAAGCGTAACCAGCAGCTAAACCTGAACCAGTCCCACACGAACGCACAAACTACAAGCCAGAAGGTGTCGCACTATCAG-CCG-CGATGTACTGTTCAAACAAGTTCACCAACCGAATCAACGTGGAAAAGTATGAAGGACCGGCCTCGCTTCCGAACCACGCAAAGAACACGCTGATCGAAACGCAACGCAAAGCAGACAGCGACCGATTGCGCAGCAAGGACAAGCAGGATCGTGCGACGGCCGAGCAGGTGATGGATCCGCGTACGCGCATGATACTGTTCAAGCTGCTGAACCGCGCGATGATCACGGAGATCAACGGGTGCATATCGACCGGGAAGGAAGCGAACGTGTACCACGCCACCGCCGCCAGCGGACGGGACTACGCGATCAAGATCTTTAAAACGTCCATCCTCACGTTCAAGGATCGGGACAAGTACGTGACGGGAGAGTACCGGTTCCGGCACG]

[+] EMBL AL695677             [GCCCCCGCAGGTCACGTGTGCGGCACACGCAGACCAACGAATTGTAGC AAACGTGTGATAAATAGGAATAGATTGTGAAAACGGCATAAAAATGAGTAGTGGACAGTTTGACGATGCGCTCGATGATACCACAGAACGCTTTGACGGTGTTCAACTGCAGGAGAAAGCTACGTCTCCTCCCGCCAGCAAAGTGAACGGNACAGCGAAGCTGACCAAAATCGAGATTCAAGATGCACTGTTTGGAGCACCGAATAGGGACGAACCGACGGCGA CGACGCGCAGTGGGAAGAGTATTACGACGACGAGGAAAGCGACGACGATGATGATTTCTACTGCTACGAGGGTGGAGCAGCTGAAGCGTAACCAGCAGCTAAACCTGAACCAGTCCCACACGAACGCACAAACTACAAGCCAGAAGGTGTCGCACTATCAG CCG CGATGTACTGTTCAAACAAGTTCA                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX624962             [                   GCGGCACACGCAGACGAA GAATTGTAGCAAAACGTGTGATAAATAGGAATAGATTGTGAAAACGGCATAAAAATGAGTAGTGGACAGTTTGACGATGCGCTCGATGATACCACAGAACGCTTTGACGGTGTTCAACTGCAGGAGAAAGCTACGTCTCCTCCCGCCAGCAAAGTGAACGGCACAGCGAAGCTGACCAAAATCGAGATTCAAGATGCACTGTTTGGAGCACCGAATAGGGACGAACCGACGGCGACCGACGCGCAGTGGGAAGAGTATTACGACGACGAGGAAAGCGACGACGATGATGATTTCTACTGCTACGAGGGTGGAG AGCTGAAGCGTAACCAGCAGCTAAACCTGAACCAGTCCCACACGAACGCACAAACTACAAGCCAGAAGGTGTCGCACTATCAGCCCGCCGATGTACTGTTCAAA AAGTTCACCAACCGAATCAACGTGGAAAAGTATGAAGGACCGGCCTCGCTTCCGAACCACGCAAAGAACACGCTGATCGAAACGCAACGCAAAGCAGACAGCGACCGATTGCGCAGCAAGGACAAGCAGGATCGTGCGACGGCCGAGCAGGTGATGGATCCGCGTACGCGCATGATACTGTTCAAGCTGCTGAACCGCGCGATGATCACGGAGATCAACGGGTGCATATCGACCGGGAAGGAAGCGAACGTGTACCACGCCACCGCCGCCAGCGGACGGGACTACGCGATCAAGATCTTTAAAACGTCCATCCTCACGTTCAAGGATCGGGACAAGTACGTGACGGGAGAGTACCGGTTCCGGCACG]




>consensus_5224#0
GCCCCCGCAGGTCACGTGTGCGGCACACGCAGACCAACGAATTGTAGCAAACGTGTGATA
AATAGGAATAGATTGTGAAAACGGCATAAAAATGAGTAGTGGACAGTTTGACGATGCGCT
CGATGATACCACAGAACGCTTTGACGGTGTTCAACTGCAGGAGAAAGCTACGTCTCCTCC
CGCCAGCAAAGTGAACGGNACAGCGAAGCTGACCAAAATCGAGATTCAAGATGCACTGTT
TGGAGCACCGAATAGGGACGAACCGACGGCGACGACGCGCAGTGGGAAGAGTATTACGAC
GACGAGGAAAGCGACGACGATGATGATTTCTACTGCTACGAGGGTGGAGCAGCTGAAGCG
TAACCAGCAGCTAAACCTGAACCAGTCCCACACGAACGCACAAACTACAAGCCAGAAGGT
GTCGCACTATCAGCCGCGATGTACTGTTCAAACAAGTTCACCAACCGAATCAACGTGGAA
AAGTATGAAGGACCGGCCTCGCTTCCGAACCACGCAAAGAACACGCTGATCGAAACGCAA
CGCAAAGCAGACAGCGACCGATTGCGCAGCAAGGACAAGCAGGATCGTGCGACGGCCGAG
CAGGTGATGGATCCGCGTACGCGCATGATACTGTTCAAGCTGCTGAACCGCGCGATGATC
ACGGAGATCAACGGGTGCATATCGACCGGGAAGGAAGCGAACGTGTACCACGCCACCGCC
GCCAGCGGACGGGACTACGCGATCAAGATCTTTAAAACGTCCATCCTCACGTTCAAGGAT
CGGGACAAGTACGTGACGGGAGAGTACCGGTTCCGGCACG

consensusID : consensus_5224#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence

                              [CCGCCCACGCGTCCGGCTACGTCTCCTCCCGCCAGCAAAGTGAACGGCACAGCGAAGCTGACCAAAATCGAGATTCAAGATGCACTGTTTGGAGCACCGAATAGGGACGAACCGACGGCGACCGACGCGCAGTGGGAAGAGTATTACGACGACGAGGAAAGCGACGACGATGATGATTTCTACTGCTACGAGGGTGGAGAGCTGAAGCGTAACCAGCAGCTAAACCTGAACCAGTCCCACACGAACGCGCAAACTACAAGCCAGAAGGTGTCGCACTATCAGCCCGCCGATGTACTGTTCAAAAAGTTCACCAACCGAATCAACGTGGAAAAGTATGAAGGACCGGCCTCGCTTCCGAACCACGCAAAGAACACGCTGATCGAAACGCAACGCATTAGCAGACAGCGACCGATTGCGCAGCAAGGACAAGCAGGATCGTGCGACGGCCGAGCAGGTGATGGATCCGCGTACGCGCATGATACTGTTCAAGCTGCTGAACCGCGCGATGATCACGGAGATCAACGGGTGCATATCGACCGGGTAAGGAAGCGAACGTG]

[+] EMBL BM584699             [CCGCCCACGCGTCCGGCTACGTCTCCTCCCGCCAGCAAAGTGAACGGCACAGCGAAGCTGACCAAAATCGAGATTCAAGATGCACTGTTTGGAGCACCGAATAGGGACGAACCGACGGCGACCGACGCGCAGTGGGAAGAGTATTACGACGACGAGGAAAGCGACGACGATGATGATTTCTACTGCTACGAGGGTGGAGAGCTGAAGCGTAACCAGCAGCTAAACCTGAACCAGTCCCACACGAACGCGCAAACTACAAGCCAGAAGGTGTCGCACTATCAGCCCGCCGATGTACTGTTCAAAAAGTTCACCAACCGAATCAACGTGGAAAAGTATGAAGGACCGGCCTCGCTTCCGAACCACGCAAAGAACACGCTGATCGAAACGCAACGCATTAGCAGACAGCGACCGATTGCGCAGCAAGGACAAGCAGGATCGTGCGACGGCCGAGCAGGTGATGGATCCGCGTACGCGCATGATACTGTTCAAGCTGCTGAACCGCGCGATGATCACGGAGATCAACGGGTGCATATCGACCGGGTAAGGAAGCGAACGTG]




>consensus_5224#1
CCGCCCACGCGTCCGGCTACGTCTCCTCCCGCCAGCAAAGTGAACGGCACAGCGAAGCTG
ACCAAAATCGAGATTCAAGATGCACTGTTTGGAGCACCGAATAGGGACGAACCGACGGCG
ACCGACGCGCAGTGGGAAGAGTATTACGACGACGAGGAAAGCGACGACGATGATGATTTC
TACTGCTACGAGGGTGGAGAGCTGAAGCGTAACCAGCAGCTAAACCTGAACCAGTCCCAC
ACGAACGCGCAAACTACAAGCCAGAAGGTGTCGCACTATCAGCCCGCCGATGTACTGTTC
AAAAAGTTCACCAACCGAATCAACGTGGAAAAGTATGAAGGACCGGCCTCGCTTCCGAAC
CACGCAAAGAACACGCTGATCGAAACGCAACGCATTAGCAGACAGCGACCGATTGCGCAG
CAAGGACAAGCAGGATCGTGCGACGGCCGAGCAGGTGATGGATCCGCGTACGCGCATGAT
ACTGTTCAAGCTGCTGAACCGCGCGATGATCACGGAGATCAACGGGTGCATATCGACCGG
GTAAGGAAGCGAACGTG

consensusID : consensus_5224#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 241
fasta sequence

                              [AGAATNGCCNAGGCTAGATACGGGTGCATATCGACCGGGAAGGAAGCGAACGTGTACCACGCCACCGCCGCCAGCGGACGGGACTACGCGATCAAGATCTTTAAAACGTCCATCCTCACGTTCAAGGATCGGGACAAGTACGTGACGGGAGAGTACCGGTTCCGGCACGGCTACAGCAAGCACAATCCGCGCAAAATGGTACGCACCTGGGCGGAGAAGGAGATGCGCAATCTGGTGCGCA]

[+] EMBL AL697443             [AGAATNGCCNAGGCTAGATACGGGTGCATATCGACCGGGAAGGAAGCGAACGTGTACCACGCCACCGCCGCCAGCGGACGGGACTACGCGATCAAGATCTTTAAAACGTCCATCCTCACGTTCAAGGATCGGGACAAGTACGTGACGGGAGAGTACCGGTTCCGGCACGGCTACAGCAAGCACAATCCGCGCAAAATGGTACGCACCTGGGCGGAGAAGGAGATGCGCAATCTGGTGCGCA]




>consensus_5224#2
AGAATNGCCNAGGCTAGATACGGGTGCATATCGACCGGGAAGGAAGCGAACGTGTACCAC
GCCACCGCCGCCAGCGGACGGGACTACGCGATCAAGATCTTTAAAACGTCCATCCTCACG
TTCAAGGATCGGGACAAGTACGTGACGGGAGAGTACCGGTTCCGGCACGGCTACAGCAAG
CACAATCCGCGCAAAATGGTACGCACCTGGGCGGAGAAGGAGATGCGCAATCTGGTGCGC
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5224#0      GCCCCCGCAGGTCACGTGTGCGGCACACGCAGACCAACGAATTGTAGCAAACGTGTGATA 60
consensus_5224#1      ------------------------------------------------------------
consensus_5224#2      ------------------------------------------------------------
                                                                                  

consensus_5224#0      AATAGGAATAGATTGTGAAAACGGCATAAAAATGAGTAGTGGACAGTTTGACGATGCGCT 120
consensus_5224#1      ------------------------------------------------------------
consensus_5224#2      ------------------------------------------------------------
                                                                                  

consensus_5224#0      CGATGATACCACAGAACGCTTTGACGGTGTTCAACTGCAGGAGAAAGCTACGTCTCCTCC 180
consensus_5224#1      ------------------------------CCGCCCAC-GCGTCCGGCTACGTCTCCTCC 29
consensus_5224#2      ------------------------------------------------------------
                                                                                  

consensus_5224#0      CGCCAGCAAAGTGAACGGNACAGCGAAGCTGACCAAAATCGAGATTCAAGATGCACTGTT 240
consensus_5224#1      CGCCAGCAAAGTGAACGGCACAGCGAAGCTGACCAAAATCGAGATTCAAGATGCACTGTT 89
consensus_5224#2      ------------------------------------------------------------
                                                                                  

consensus_5224#0      TGGAGCACCGAATAGGGACGAACCGACGGCGAC-GACGCGCAGTGGGAAGAGTATTACGA 299
consensus_5224#1      TGGAGCACCGAATAGGGACGAACCGACGGCGACCGACGCGCAGTGGGAAGAGTATTACGA 149
consensus_5224#2      ------------------------------------------------------------
                                                                                  

consensus_5224#0      CGACGAGGAAAGCGACGACGATGATGATTTCTACTGCTACGAGGGTGGAGCAGCTGAAGC 359
consensus_5224#1      CGACGAGGAAAGCGACGACGATGATGATTTCTACTGCTACGAGGGTGGAG-AGCTGAAGC 208
consensus_5224#2      ------------------------------------------------------------
                                                                                  

consensus_5224#0      GTAACCAGCAGCTAAACCTGAACCAGTCCCACACGAACGCACAAACTACAAGCCAGAAGG 419
consensus_5224#1      GTAACCAGCAGCTAAACCTGAACCAGTCCCACACGAACGCGCAAACTACAAGCCAGAAGG 268
consensus_5224#2      --------------------------------AGAATNGCCNAGGCTAGATACGGGTGCA 28
                                                      *  *  **  *  *** *  *  *    

consensus_5224#0      TGTCGCACTATCAGCCG--CGA--TGTACTGTTCAAACAAGTTCACCAACCGAATCAACG 475
consensus_5224#1      TGTCGCACTATCAGCCCGCCGA--TGTACTGTTCAAA-AAGTTCACCAACCGAATCAACG 325
consensus_5224#2      TATCGACCGGGAAGGAAGCGAACGTGTACCACGCCACCGCCGCCAGCGGACGGGACTACG 88
                      * ***  *    **       *  *****    * *       ** *   **   * ***

consensus_5224#0      TGGAAAAG----TATGAAGGACCGGCCTCGCTTCCGAACCACGCAAAGAACACGCTGATC 531
consensus_5224#1      TGGAAAAG----TATGAAGGACCGGCCTCGCTTCCGAACCACGCAAAGAACACGCTGATC 381
consensus_5224#2      CGATCAAGATCTTTAAAACGTCCATCCTCACGTTCAAGGATCGGGACAAGTACG-TGACG 147
                       *   ***    *   ** * **  **** * * * *    **  *  *  *** ***  

consensus_5224#0      GAAACGCAACGCAA-AGCAGACAGCGACCGATTGCGCAGCAAGGACAAGCAGGATCGTGC 590
consensus_5224#1      GAAACGCAACGCATTAGCAGACAGCGACCGATTGCGCAGCAAGGACAAGCAGGATCGTGC 441
consensus_5224#2      GGAGAGTACCGGTTCCG-GCACGGCTACAGCAAGCACAATCCGCGCAAAATGGTACGCAC 206
                      * *  * * **     *   ** ** ** *   ** **    *  ***   **  **  *

consensus_5224#0      GACGGCCGAGCAGGTGATGGATCCGCGTACGCGCATGATACTGTTCAAGCTGCTGAACCG 650
consensus_5224#1      GACGGCCGAGCAGGTGATGGATCCGCGTACGCGCATGATACTGTTCAAGCTGCTGAACCG 501
consensus_5224#2      CTGGGCGGAGAAGGAGATGCGCAATCTGGTGCGCA------------------------- 241
                         *** *** *** ****      *    *****                         

consensus_5224#0      CGCGATGATCACGGAGATCAACGGGTGCATATCGACCGGG-AAGGAAGCGAACGTGTACC 709
consensus_5224#1      CGCGATGATCACGGAGATCAACGGGTGCATATCGACCGGGTAAGGAAGCGAACGTG---- 557
consensus_5224#2      ------------------------------------------------------------
                                                                                  

consensus_5224#0      ACGCCACCGCCGCCAGCGGACGGGACTACGCGATCAAGATCTTTAAAACGTCCATCCTCA 769
consensus_5224#1      ------------------------------------------------------------
consensus_5224#2      ------------------------------------------------------------
                                                                                  

consensus_5224#0      CGTTCAAGGATCGGGACAAGTACGTGACGGGAGAGTACCGGTTCCGGCACG 820
consensus_5224#1      ---------------------------------------------------
consensus_5224#2      ---------------------------------------------------