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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1215 fasta sequence
[CCGGTGCAACTTCATCAACGAGACGGGCAACATCATCAGCGATCTCGTCATCTGCGACACACTGTCCGCGATGCACTCGAACTACTACAACGCGTCGATCGAGACGCGGCTCGCGCACGCCGCCTCGATCTGCTTCTGGACCAAAACGACCATCAGCATCCGGCAGGCGGAGCTGATGATGAAGAACAACGCGATCGTGGCGCTGAAGCTGTTCGGGTTCGAGGACCACTGCTGCGAGTACTTTAACAACGATGCGCACGCGATCGACATCGGGCTGCGGATAGCGAAGCATTCGCTCGAAACGAACGTGCAGATCGTGTCGGACGCGAGCGATCCGGGCGCGATCCGGATCGATGGCAGTCGGTTCCCGATCGTGGAGCTGCTGCGGCTCGAGCCGAGCGAGGTCGAGACGCTGTTCGAGGCGCTGCAGGGCGTTTCGGCGGACGAGCGTGCACT-GTTCGATGAGATGCGTCCACTGGTTTGCTGCGGGAAGGCGGCTGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCGCATCCTTGCCCGGGAAGCGGAACGGGAGTGCTTGCCCGTGAGCGATCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGAGG------CGGCAGCGTACAACCGACCACGTTCCAGCTTTCGGCCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGCCTGAAGCCGGCCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGAGCTGTCCGCTGGGGAGAACAGCAGCAGCAGCAGTAAGCCGCGTGACGGTGAAGAGACAGGCGATAGGGAAACGAACCGTTTAATTCGGGCACTGTTGGAGCTGTCCGAGAAGCAGTGCAGCCAGTTGTCGGACATTATCCGCCAGGATCCGAATTACTTTTCTATCTTTAAGCAAAAGCCACTGGAAACGATCCAACAGGCAGGTGAGGTGGCCGTCCCGGAGGCCCACAGGGAGCAGCTGCTGTACGCAAGGCTTAAGGAGAATATTTTGAAAGCACTGGAGCGAAACACGACCGCGAAGGACGACAGCTAAATCATCGGCCACATGCAAAAGAAGCAACTGTGGGTAAGTTTTCACCTCGACTCCTTTTCCACGCACACACACACACATTCCCCGGAAGGTTCCAAAAAAGATGTTTAGAAGTCATTTGTATGCTTTGTGGATTT]
[+] EMBL BM629026 [CCGGTGCAACTTCATCAACGAGACGGGCAACATCATCAGCGATCTCGTCATCTGCGACACACTGTCCGCGATGCACTCGAACTACTACAACGCGTCGATCGAGACGCGGCTCGCGCACGCCGCCTCGATCTGCTTCTGGACCAAAACGACCATCAGCATCCGGCAGGCGGAGCTGATGATGAAGAACAACGCGATCGTGGCGCTGAAGCTGTTCGGGTTCGAGGACCACTGCTGCGAGTACTTTAACAACGATGCGCACGCGATCGACATCGGGCTGCGGATAGCGAAGCATTCGCTCGAAACGAACGTGCAGATCGTGTCGGACGCGAGCGATCCGGGCGCGATCCGGATCGATGGCAGTCGGTTCCCGATCGTGGAGCTGCTGCGGCTCGAGCCGAGCGAGGTCGAGACGCTGTTCGAGGCGCTGCAGGGCGTTTCGGCGGACGAGCGTGCACT GTTCGATGAGATGCGTCCACTGGTTTGCTGCGGGAAGGCGGCTGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCGCATCCTTGCCCGGGAAGCGGAACGGGAGTGCTTGCCCGTGAGCGATCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGGGGCGCGGCCGGCAGCGTACAACCGACCACGTTCC ]
[+] EMBL BX619609 [ TCGAGCCGGGC ANGTCGAGACGCTGTTCGAGGCGCTGCAGGGCGTTTCGGCGGACGAGCGTGCACTGGTTCGATGAGATGCGTCCACTGGTTTGCTGCGGGAAGGCGGCTGCCGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCGCGTCCTTGCTCGGGAAGCGGAACGGGAGTGCTTGCCCGTGAGCGATCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGAGG CGGCAGCGTACAACCGACCACGTTCCAGCTTTCGGCCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGCCTGAAGCCGGCCTTCATTCTGTTTGCGTCGAAGG ]
[+] EMBL BM620122 [ ccgCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGAGG CGGCAGCGTACAACCGACCACGTTCCAGCTTTCGGCCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGCCTGAAGCCGGCCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGAGCTGTCCGCTGGGGAGAACAGCAGCAGCAGCAGTAAGCCGCGTGACGGTGAAGAGACAGGCGATAGGGAAACGAACCGTTTAATTCGGGCACTGTTGGAGCTGTCCGAGAAGCAGTGCAGCCAGTTGTCGGACATTATCCGCCAGGATCCGAATTACTTTTCTATCTTTAAGCAAAAGCCACTGGAAACGATCCAACAGGCAGGTGAGGTGGCCGTCCCGGAGGCCCACAGGGAGCAGCTGCTGTACGCAAGGCTTAAGGAGAATATTTTGAAAGCACTGGAGCGAAACACGACCGCGAAGGACGACAGCTAAATCATCGGCCACATGCAAAAGAAGCAACTGTGGGTAAGTTTTCACCTCGACTCCTTTTCCACGCACACACACACACATTCCCCGGAAGGTTCCAAAAAAGATGTTTAGAAGTCATTTGTATGCTTTGTGGATTT]
consensusID : consensus_5225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence
[AGATCGCCGAGGTTAATCGTGAGCTGTGCGGCTCGAGCCGAGCGAGGTCAGACGCTGTTCGAGGCGCTGCAGGGCGTTCGGCGGACGAGCGTGCACTGTTCGATGAGATGCGTCACTGGTTTGCTGCGGGAAGGCGGTGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCGCATCTTGCCCGGGAAGCGGAACGGGAGTGTTGCCCGTGAGCGATCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGGGGGCGCGGCGGCAGCGTACAACCGACACGTTCCAGCTTTCGGGCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGGCCTGAAGCCGGGCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGAAGCTGTCCGCTGGGGAGAACAGCAGCCAGCAGAGGTAAGCCGCGTGACGGTGGCGAGACAGGCGATACGGAAACGAACCGTTTAATTCCGGGCACTGTTTGGAGC]
[+] EMBL AL695698 [AGATCGCCGAGGTTAATCGTGAGCTGTGCGGCTCGAGCCGAGCGAGGTCAGACGCTGTTCGAGGCGCTGCAGGGCGTTCGGCGGACGAGCGTGCACTGTTCGATGAGATGCGTCACTGGTTTGCTGCGGGAAGGCGGTGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCGCATCTTGCCCGGGAAGCGGAACGGGAGTGTTGCCCGTGAGCGATCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGGGGGCGCGGCGGCAGCGTACAACCGACACGTTCCAGCTTTCGGGCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGGCCTGAAGCCGGGCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGAAGCTGTCCGCTGGGGAGAACAGCAGCCAGCAGAGGTAAGCCGCGTGACGGTGGCGAGACAGGCGATACGGAAACGAACCGTTTAATTCCGGGCACTGTTTGGAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5225#0 CCGGTGCAACTTCATCAACGAGACGGGCAACATCATCAGCGATCTCGTCATCTGCGACAC 60
consensus_5225#1 ------------------------------------------------------------
consensus_5225#0 ACTGTCCGCGATGCACTCGAACTACTACAACGCGTCGATCGAGACGCGGCTCGCGCACGC 120
consensus_5225#1 ------------------------------------------------------------
consensus_5225#0 CGCCTCGATCTGCTTCTGGACCAAAACGACCATCAGCATCCGGCAGGCGGAGCTGATGAT 180
consensus_5225#1 ------------------------------------------------------------
consensus_5225#0 GAAGAACAACGCGATCGTGGCGCTGAAGCTGTTCGGGTTCGAGGACCACTGCTGCGAGTA 240
consensus_5225#1 ------------------------------------------------------------
consensus_5225#0 CTTTAACAACGATGCGCACGCGATCGACATCGGGCTGCGGATAGCGAAGCATTCGCTCGA 300
consensus_5225#1 ------------------------------------------------------------
consensus_5225#0 AACGAACGTGCAGATCGTGTCGGACGCGAGCGATCCGGGCGCGATCCGGATCGATGGCAG 360
consensus_5225#1 -----------------------------------------------AGATCGCCGA--- 10
***** *
consensus_5225#0 TCGGTTCCCGATCGTGGAGCTGCTGCGGCTCGAGCCGAGCGAGGTCGAGACGCTGTTCGA 420
consensus_5225#1 --GGTT---AATCGTG-AGCTG-TGCGGCTCGAGCCGAGCGAGGTC-AGACGCTGTTCGA 62
**** ****** ***** *********************** *************
consensus_5225#0 GGCGCTGCAGGGCGTTTCGGCGGACGAGCGTGCACTGTTCGATGAGATGCGTCCACTGGT 480
consensus_5225#1 GGCGCTGCAGGGCGTT-CGGCGGACGAGCGTGCACTGTTCGATGAGATGCGTC-ACTGGT 120
**************** ************************************ ******
consensus_5225#0 TTGCTGCGGGAAGGCGGCTGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCG 540
consensus_5225#1 TTGCTGCGGGAAGGCGG-TGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCG 179
***************** ******************************************
consensus_5225#0 CATCCTTGCCCGGGAAGCGGAACGGGAGTGCTTGCCCGTGAGCGATCTGATGGAAATGTT 600
consensus_5225#1 CATC-TTGCCCGGGAAGCGGAACGGGAGTG-TTGCCCGTGAGCGATCTGATGGAAATGTT 237
**** ************************* *****************************
consensus_5225#0 GCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGAGG------CGGCAGCGTACAACC 654
consensus_5225#1 GCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGGGGGCGCGGCGGCAGCGTACAACC 297
************************************ ** ***************
consensus_5225#0 GACCACGTTCCAGCTTTCGGCCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCG-CC 713
consensus_5225#1 GAC-ACGTTCCAGCTTTCGGGCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGGCC 356
*** **************** ************************************ **
consensus_5225#0 TGAAGCCGGCCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGA-GCTG 772
consensus_5225#1 TGAAGCCGGGCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGAAGCTG 416
********* ********************************************* ****
consensus_5225#0 TCCGCTGGGGAGAACAGCAGC-AGCAGCAGTAAGCCGCGTGACGGTGAAGAGACAGGCGA 831
consensus_5225#1 TCCGCTGGGGAGAACAGCAGCCAGCAGAGGTAAGCCGCGTGACGGTGGCGAGACAGGCGA 476
********************* ***** ****************** ***********
consensus_5225#0 TAGGGAAACGAACCGTTTAATTC-GGGCACTGTT-GGAGCTGTCCGAGAAGCAGTGCAGC 889
consensus_5225#1 TACGGAAACGAACCGTTTAATTCCGGGCACTGTTTGGAGC-------------------- 516
** ******************** ********** *****
consensus_5225#0 CAGTTGTCGGACATTATCCGCCAGGATCCGAATTACTTTTCTATCTTTAAGCAAAAGCCA 949
consensus_5225#1 ------------------------------------------------------------
consensus_5225#0 CTGGAAACGATCCAACAGGCAGGTGAGGTGGCCGTCCCGGAGGCCCACAGGGAGCAGCTG 1009
consensus_5225#1 ------------------------------------------------------------
consensus_5225#0 CTGTACGCAAGGCTTAAGGAGAATATTTTGAAAGCACTGGAGCGAAACACGACCGCGAAG 1069
consensus_5225#1 ------------------------------------------------------------
consensus_5225#0 GACGACAGCTAAATCATCGGCCACATGCAAAAGAAGCAACTGTGGGTAAGTTTTCACCTC 1129
consensus_5225#1 ------------------------------------------------------------
consensus_5225#0 GACTCCTTTTCCACGCACACACACACACATTCCCCGGAAGGTTCCAAAAAAGATGTTTAG 1189
consensus_5225#1 ------------------------------------------------------------
consensus_5225#0 AAGTCATTTGTATGCTTTGTGGATTT 1215
consensus_5225#1 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||