|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 815 fasta sequence
[GCAGAATCCCGAGGTTAAGCTGACGGCGAAATCATCGTCAACGATGGGTATCGGTCGAGGAGCACCAGGTAACGACGGCGATGGCTACGTCCTGACGATAGTTCCGATNCCCGGCGGCCCGGCAATCCGGCACGCGAAGTGCAAGAACGTCGCGTTCATTCAGCACGGTACTGCTCTGCTCGTCCGCCGACTGGGTCATTCTTGGACCGGGCAAAGCACTCGCCTACATGCTGGTCGACGCCGGATACGACAGTGTGGCTGGGCAATGCCCTGTGGCAATACAAACTCCCGCCGCACATCTTCCACGATCCGGATGCGCGCAATACGGACTTCTGGGACTTTAGCTGGCACGAGATCGGCTACTTCGGATCTGCCGCCATGATCGATTACGCGCTCCAGTACACGGGACAGACGGTCGCTCCAGTACGCCGGCCACTCGCAGGGCACTANCTCGTTCTTCATCATGACTTCGCTGCGGCGGAGTACAAANGAGCGCATCCGTCGATGCATGCGCTGGCTCCGGGTTGGGTTCATGAGCAATACTTGCGGTCCCCGTTCGTACCGGGCGTTCGTCCCTTCGTCGAACAGATTTGATTTGGTGATGCGGTATTGTTTGGGGTGTTAACGAAGTTCCTTGGCCAGCAGCGACCATGAATTGACGCTCGGNTGGGGCAAATGCTCTGCGCAGGATTGAGGCCCGCTTCCAAGAAGGTGTNCGGCCACAGTGTCCTCCCTGAATNGGGTGGATCAATCCNCGAGTATAACCNGCACACNNTGCCGGCATNTTGGCAANACACGGCGNCTCGTAACCAGTT]
[+] EMBL AL933638 [GCAGAATCCCGAGGTTAAGCTGACGGCGAAATCATCGTCAACGATGGGTATCGGTCGAGGAGCACCAGGTAACGACGGCGATGGCTACGTCCTGACGATAGTTCCGATNCCCGGCGGCCCGGCAATCCGGCACGCGAAGTGCAAGAACGTCGCGTTCATTCAGCACGGTACTGCTCTGCTCGTCCGCCGACTGGGTCATTCTTGGACCGGGCAAAGCACTCGCCTACATGCTGGTCGACGCCGGATACGACAGTGTGGCTGGGCAATGCCCTGTGGCAATACAAACTCCCGCCGCACATCTTCCACGATCCGGATGCGCGCAATACGGACTTCTGGGACTTTAGCTGGCACGAGATCGGCTACTTCGGATCTGCCGCCATGATCGATTACGCGCTCCAGTACACGGGACAGACGGTCGCTCCAGTACGCCGGCCACTCGCAGGGCACTANCTCGTTCTTCATCATGACTTCGCTGCGGCGGAGTACAAANGAGCGCATCCGTCGATGCATGCGCTGGCTCCGGGTTGGGTTCATGAGCAATACTTGCGGTCCCCGTTCGTACCGGGCGTTCGTCCCTTCGTCGAACAGATTTGATTTGGTGATGCGGTATTGTTTGGGGTGTTAACGAAGTTCCTTGGCCAGCAGCGACCATGAATTGACGCTCGGNTGGGGCAAATGCTCTGCGCAGGATTGAGGCCCGCTTCCAAGAAGGTGTNCGGCCACAGTGTCCTCCCTGAATNGGGTGGATCAATCCNCGAGTATAACCNGCACACNNTGCCGGCATNTTGGCAANACACGGCGNCTCGTAACCAGTT]
consensusID : consensus_5228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 810 fasta sequence
[ANGCAGAATTGCCCGAGGTTATGCGCGCATACGGACTTCTGGGACTTTACTGGCACGAGATCGGCTACTTCGATCTG-CCGCCATGATCGATTACGCGCTCCAGTACACGGGACAGACGTCGCTCCAGTACGCCGGCCACTCGCAGGGCACTAACTCGTTCTTCATCATGACTTCGCTGCGGCCGGAGTACAACGAGCGCAT-CGCTCGATGCATGCGCTGGCTCCGGTTGCGTTCATGAGCAATCTGCGGTCCCCGTTCGTCCGGGCGTTCGCTCCCTTCGTCGACCAGATTGATTGGCTGATGCGTATGTTAGGGTGTGAACGAGTTCCTGGCCAGCAGCCGACATGATGACGCTCGGTGGCCAAATGCTCTGCCAGGATGAGGGCCCGCTTCCAGNGAGGTGTGCGCCAACGTGCTCTATCCTGATNGGTGGATTCAACTCGCCGCCANNCTGAACCGCACCACTGCTGCCGGCCATTTCGGCC-ACACANCGGCCGGAGCCTCCGTTAAACCAGCTGGTCCACTACGCCCAGGGCTACAATTACGGGCCGCTTCCGGGCAAGTTNCGACTACGGACTTGACGCTGAACCTCATCCGGTACGGGTCTCGAATCCGGTCCCGCCAGGACNTATACGCTGGAACGGGTGA-CGCTCCGGCTCGCCACTTGACCTCACNGGTGACAACGATTGGCTAGCGGCCGTGTCGGACGTACGCCAGCTGCACTCCAGCATCCGCAACCCGATCGGACTGTTCCGCGTGTCCGATCCGGACTGGAACCATCTCGACTTCACCTGGGGCATCGATGCCGAC]
[+] EMBL AL695897 [ANGCAGAATTGCCCGAGGTTATGCGCGCATACGGACTTCTGGGACTTTACTGGCACGAGATCGGCTACTTCGATCTG CCGCCATGATCGATTACGCGCTCCAGTACACGGGACAGACGTCGCTCCAGTACGCCGGCCACTCGCAGGGCACTAACTCGTTCTTCATCATGACTTCGCTGCGGCCGGAGTACAACGAGCGCAT CGCTCGATGCATGCGCTGGCTCCGGTTGCGTTCATGAGCAATCTGCGGTCCCCGTTCGTCCGGGCGTTCGCTCCCTTCGTCGACCAGATTGATTGGCTGATGCGTATGTTAGGGTGTGAACGAGTTCCTGGCCAGCAGCCGACATGATGACGCTCGGTGGCCAAATGCTCTGCCAGGATGAGGGCCCGCTTCCAGNGAGGTGTGCGCCAACGTGCTCTATCCTGATNGGTGGATTCAACTCGCCGCCANNCTGAACCGCACCACTGCTGCCGGCCATTTCGGCC ACACANCGGCCGGAGCCTCCGTTAAACCAGCTGGTCCACTACGCCCAGGGCTACAATTACGGGCCGCTTCCGGGCAAGTTNCGACTACGGACTTGACGCTGAACCTCATCCGGTACGGGTCTCGAATCCGGTCCCGCCAGGACNTATACGCTGGAACGGGTGA CGCTCCGGCTCGCCACTTGACCTCACNGGTGA ]
[+] EMBL BX627639 [ TACTTCGATCTGCCCGCCATGATCGATTACGCGCTCCAGTACACGGGACAGACGTCGCTCCAGTACGCCGGCCACTCGCAGGGCACTACCTCGTTCTTCATCATGACTTCGCTGCGGCCGGAGTACAACGAGCGCATCCGCTCGATGCATGCGCTGGCTCCGGTTGCGTTCATGAGCAATCTGCGGTCCCCGTTCGTCCGGGCGTTCGCTCCCTTCGTCGACCAGATTGATTGGCTGATGCGTATGTT GGGTGTGAACGAGTTCCTGCCCAGCAG CGACATGATGACGCTCGGTGGCCAAATGCTCTGCCAGGATGA GGCCCGCTTCCAG GAGGTGTGCGCCAACGTGCTCT TCCTGATTGGTGGATTCAACTCGCCG CA GCTGAACCGCACCA TGCTGCCGGCCATTTTGGCCAACACACCGGCCGGAGCCTCCGTT AACCAGCTGGTCCACTACGCCCAGGGCTACAATT CGGGCCGCTTCC GGC AGTT CGACTACGGAC TGACGCTGAACCTCATCCGCTAC GGT TCG ATCC GT CCGCCA GAC TATCCGCTGGACCGGGTGACCGCTCCGG TCG CAC TGCACT AC GGTGACAACGATTGGCTAGCGGCCGTGTCGGACGTACGCCAGCTGCACTCCAGCATCCGCAACCCGATCGGACTGTTCCGCGTGTCCGATCCGGACTGGAACCATCTCGACTTCACCTGGGGCATCGATGCCGAC]
consensusID : consensus_5228#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 740 fasta sequence
[TGCCCGAGGTTATGTTCATTCAGCACGGTCTGCTCTGCTCGTCCGCCGACTGGGTCATTCTTGGACCGGGCAAAGCACTCGCCTACATGCTGGTCGACGCCGGATACGACGTGTGGCTGGGCAATGCCCGGGGCAATACAAATCCCGCGCAATCTTCCACGATCCGGATGCGCGCAATACGGACTTCTGGGACCTTTAGCTGGCCACGAGATTCGGCTACTTCGGATCTGCCGCATGATCGATTAACGGCGCTCCAGGTACAACGGGACATGACGTCTGCTCCAGTACNGCCGGCCACTCGCCAGGGCCACTANCTCGGTATCTTCATCATTGACTTCGCTGCTGGCCTGGAGTTACAACGAGCTGCATCCTGCTCGATGCGATTGCTGCTGGCTCCGGTTGCGTTCATGAGCAATACTGTGGGTACCCCCCGGATATACCGTACCTGGGACGTTACAGGCTACCNCTATCGGTACCGGAACCAAGATTTGGATTATCGGGCTTGANTTGCCGGTTATTAGTACAGGGGTTGTAGAAACGGAGGTTTACCCCTTGNCCCAAGAGCAGGACGGAANCATTGGATTGACCTGGCNTACCGAGATTGGGCGCCAAAAATTGGCTACTTCCCAAGAGGAATTGAAAGGGCCCCGGCTATCACCAAGGAAGTGGTTGTAGCTGCCCAAACGTAGCGTCTATCCCTTGGAATATCTGGGTTGGGATTTCCAAATCGGCCCGGGCAG]
[+] EMBL AL696384 [TGCCCGAGGTTATGTTCATTCAGCACGGTCTGCTCTGCTCGTCCGCCGACTGGGTCATTCTTGGACCGGGCAAAGCACTCGCCTACATGCTGGTCGACGCCGGATACGACGTGTGGCTGGGCAATGCCCGGGGCAATACAAATCCCGCGCAATCTTCCACGATCCGGATGCGCGCAATACGGACTTCTGGGACCTTTAGCTGGCCACGAGATTCGGCTACTTCGGATCTGCCGCATGATCGATTAACGGCGCTCCAGGTACAACGGGACATGACGTCTGCTCCAGTACNGCCGGCCACTCGCCAGGGCCACTANCTCGGTATCTTCATCATTGACTTCGCTGCTGGCCTGGAGTTACAACGAGCTGCATCCTGCTCGATGCGATTGCTGCTGGCTCCGGTTGCGTTCATGAGCAATACTGTGGGTACCCCCCGGATATACCGTACCTGGGACGTTACAGGCTACCNCTATCGGTACCGGAACCAAGATTTGGATTATCGGGCTTGANTTGCCGGTTATTAGTACAGGGGTTGTAGAAACGGAGGTTTACCCCTTGNCCCAAGAGCAGGACGGAANCATTGGATTGACCTGGCNTACCGAGATTGGGCGCCAAAAATTGGCTACTTCCCAAGAGGAATTGAAAGGGCCCCGGCTATCACCAAGGAAGTGGTTGTAGCTGCCCAAACGTAGCGTCTATCCCTTGGAATATCTGGGTTGGGATTTCCAAATCGGCCCGGGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5228#0 --GCAGAAT--CCCGAGGTTAAGCTGACG-GCGAAATCATCGTCAACGATGGGTATCGGT 55
consensus_5228#1 ANGCAGAATTGCCCGAGGTTATGCGCGCATACGGACTTCTGGGACTTTACTGGCACGAGA 60
consensus_5228#2 ------------------------------------------------------------
consensus_5228#0 CGAGGAGCACCAGGTAACGACGGCGAT-GGCTACGTCCTGACGATAGTTCCGATNCCCGG 114
consensus_5228#1 TCGGCTACTTCGATCTGCCGCCATGATCGATTACGCGCTC-CAGTACACGGGACAGACGT 119
consensus_5228#2 ---------------------TGCCCGAGGTTATGTTCATTCAGCACGGTCTGCTCTGCT 39
* ** * * * *
consensus_5228#0 CGGCCCGGCAATCCGGC-ACGCGAAGTGCAAGAACGTCGCGTTCATTCAGCACGGTAC-T 172
consensus_5228#1 CGCTCCAGTACGCCGGCCACTCGCAGGGCACTAACT---CGTTC-TTCATCATGACTT-C 174
consensus_5228#2 CG-TCCGCCGACTGGGTCATTCTTGGACCGGGCAAAGCACTCGCCTACATGCTGGTCGAC 98
** ** ** * * * * * * * * ** *
consensus_5228#0 GCTCTGCTCGTCCGCCGACTGGGTCATTCTTGGAC-CGGGCAAAGCACTCGCCTACATGC 231
consensus_5228#1 GCTGCGGCCGGAGTACAACGAGCGCATCGCTCGATGCATGCGCTGGCTCCGGTTGCGTTC 234
consensus_5228#2 GCCGGATACGACGTGTGGCTGGGCAATGCCCGGGGCAATACAAATCCCGCGCAATCTTCC 158
** ** * * ** * * ** * * *
consensus_5228#0 -TGGTCGACGCCGGATACGACAGTGTGGCTGGGCAATGCCCTGTGGCAATACAAACTCCC 290
consensus_5228#1 ATGAGCAATCTGCGGTCC--CCGTTCGTCCGGGCGTT---------CGCTCCCTTCGTCG 283
consensus_5228#2 ACGATCCGGATGCGCGCAATACGGACTTCTGGGA----------------CCTTTAGCTG 202
* * * * * *** *
consensus_5228#0 GCCGCACATCTTCCACGATCCGGATGC--GCGCAATACGGACTTCTGGGACTTTAGCTGG 348
consensus_5228#1 ACCAGATTGATTGGCTGATGCGTATGTTAGGGTGTGAACGAGTTCCTGGCCAGCAGCCGA 343
consensus_5228#2 GCCACGAGATTCGGCTACTTCGGATCT-GCCGCATGATCGATTAACGGCGCTCCAGGTAC 261
** * * ** ** * * ** * * * **
consensus_5228#0 CACG----AGATCGGCTACT--TCGGATCTGCCGCCATGATCGATTACGCGCTCCAGTAC 402
consensus_5228#1 CATG----ATGACGCTCGGTGGCCAAATGCTCTGCCAGGAT-GAGGGCCCGCTTCCAGNG 398
consensus_5228#2 AACGGGACATGACGTCTGCTC-CAGTACNGCCGGCCACTCGCCAGGGC-CACTANC-TCG 318
* * * ** * * * **** * * * **
consensus_5228#0 ACGGGACAGACGGT-CGCTCCAGTACGCCGGCCACTCGCAGGGCACTANCTCGTTCTTCA 461
consensus_5228#1 AGGTGTGCGCCAACGTGCTCTATCCTGATNGGTGGATTCAACTCGCCGCC--ANNCTGAA 456
consensus_5228#2 GTATCTTCATCATTGACTTCGCTGCTGGCCTGGAGTTACAACGAGCTGCATCCTGCTCGA 378
* ** * ** * ** *
consensus_5228#0 TCATGACTTCGCTGCGGCGGAGTACAAANGAGCGCATCCGTCGATGCATGCGCTGGCTCC 521
consensus_5228#1 CCGCACCACTGCTGCCGGCCATTTCGGCC--ACACANCGGCCGGAGCCTCCGTTAAACCA 514
consensus_5228#2 TGCGATTGCTGCTGGCTCCGGTTGCGTTCATGAGCAATACTGTGGGTACCCCCCGGATAT 438
**** * * ** * *
consensus_5228#0 G--G-GTTGGGTTCAT---GAGCAATACTTGCGGTCCCCGTTCGTACCGG--GCGTTCGT 573
consensus_5228#1 GCTG-GTCCACTACGCCCAGGGCTACAATTACGGGCCGCTTCCGGGCAAGTTNCGACTAC 573
consensus_5228#2 ACCGTACCTGGGACGTTACAGGCTACCNCTATCGGTACCGGAACCAAGATTTGGATTATC 498
* * ** * * * *
consensus_5228#0 CCCTTCGTCGAACAGATTTGATTTGGTGATGCGGTATTGTTTGGGG---TGTTAACGAAG 630
consensus_5228#1 GGACTTGACGC-TGAACCTCATCCGGT-ACG-GGTCTCGAATCCGG---TCCCGCCAGGA 627
consensus_5228#2 GGGCTTGANTTGCCGG--TTATTAGTACAGGGGTTGTAGAAACGGAGGTTTACCCCTTGN 556
* * * ** * * * * * * * * * *
consensus_5228#0 TTCCTTGGCCAGCAGCGACCAT-GAATTGACGCTCGGNTGGGGCAAATGCTCTGCGCAGG 689
consensus_5228#1 CNTATACGCTGGAACGGGTGAC-GCTCCGGCTCGCCACTTGACCTCACNGGTGACAACGA 686
consensus_5228#2 CCCAAGAGCAGGACGGAANCATTGGATTGACCTGGCNTACCGAGAT-TGGGCGCCAAAAA 615
** * * * * * *
consensus_5228#0 ATTGAGGCCCGCTTCCAAGAAGGTGTNC-GGCCACAGTGT--CCTCCCTGAATNGGGTGG 746
consensus_5228#1 TTGGCTAGCGGCCGTGTCGGACGTACGCCAGCTGCACTCCAGCATCCGCAACCCGATCGG 746
consensus_5228#2 TTGGCTACTTCCCAAGAGGAATTGAAAGGGCCCCGGCTAT--CACCAAGGAAGTGGTTGT 673
* * * * * * * * * * * *
consensus_5228#0 ATCAATCCNCGAGTATAACCNGCACACNNTGCCGGCATNTTGGCAANACACGGCGNCTCG 806
consensus_5228#1 ACTGTTCCGCGTGT----CCGATCCGGACTGGAACCATCTCGACTTCACCTGGGGCATCG 802
consensus_5228#2 AGCTGCCCAAACGTAGCGTCTATCC---CTTGGAATATCTGGGTTGGGATTTCCAAATCG 730
* ** ** * * * ** * * ***
consensus_5228#0 TAACCAGTT- 815
consensus_5228#1 ATGCCGAC-- 810
consensus_5228#2 GCCCGGGCAG 740
*
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||