cluster # 5229

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Anopheles gambiae
cluster # 5229 cluster # 5229 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5229#0 length = 906 sequences # 3

consensus_5229#1 length = 613 sequences # 1

consensusID : consensus_5229#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 906
fasta sequence

                              [CCGCATCGCCACCGGTTATCACACCACTCACGTCGTGCCAGTGCTGAACGGACGCATGGTGGTGGAAAATATACGCCGCATAAACATTGGCGGATCGCACATGATCGCCTTTCTGCACCGATGTTTGCAGCTGAAGTATACATTCCACCTTAACGCGATCACGTTGAGTCGTTCGGAGGTTTTGCTGCACAAGTATGGAGAGTTTGCGTACGACTACATGGAGGCGCTCCAAAACTGGGCCTGCCTGACATATTATAACCAAAACGTGAAGAAAATACAGCTGCCCTACAACCAGACCACTGCAGCGCCGGCACTAACGACGGAGCAGAAGTTTGAAAAGAAGAAAGAGCTTTCTAAACGATTGGCAGAGATCAATGCACGGCGGCGTGAGGAACGACTGGCGCAGGATGAGGAATTGCTAATGCAGCTACAGCAGCTAGAAGAGTCCGCGGAAGATGGAGAGGACATTCGCGATGGTTTGGTCGAGCACAGCATCAAAGACGTGGGCGAGCTGAAACGAATGATTGCCACCGTAAATGCTCGAATCGAAAAAGCGCGTCAAAAAATGAACGCACCATGCGCGGGCGGCT-CCCAGTCGCAGCTGC-ATCCGATTCGGACAAATTATTACAA-CCCCGCCCAACATGTCTGT-GGTCGAGTGGGTCGAGGAAACGCGCCCGCAAGCGTTNGACGCCCATAATAGAAAAACGACAAGCGCGAAGGCAGCGTAAGCAGGACCTTGCCAAGCGGCGGACGGCAGCCGCTCAGGAGCGAATGCGCATCATTTCCCACCTCGCCCGAAAAGAGAAGGGTAGCGATGATTTCGGAATGCGCGACGAGGACTGGGATGTGTATAAGCAAATCAGTCGCGAAGAGGATAGCGACAATGAGAACGACAGTGAACGTTTG]

[+] EMBL BM589706             [CCGCATCGCCACCGGTTATCACACCACTCACGTCGTGCCAGTGCTGAACGGACGCATGGTGGTGGAAAATATACGCCGCATAAACATTGGCGGATCGCACATGATCGCCTTTCTGCACCGATGTTTGCAGCTGAAGTATACATTCCACCTTAACGCGATCACGTTGAGTCGTTCGGAGGTTTTGCTGCACAAGTATGGAGAGTTTGCGTACGACTACATGGAGGCGCTCCAAAACTGGGCCTGCCTGACATATTATAACCAAAACGTGAAGAAAATACAGCTGCCCTACAACCAGACCACTGCAGCGCCGGCACTAACGACGGAGCAGAAGTTTGAAAAGAAGAAAGAGCTTTCTAAACGATTGGCAGAGATCAATGCACGGCGGCGTGAGGAACGACTGGCGCAGGATGAGGAATTGCTAATGCAGCTACAGCAGCTAGAAGAGTCCGCGGAAGATGGAGAGGACATTCGCGATGGTTTGGTCGAGCACAGCATCAAAGACGTGGGCGAGCTGAAACGAATGATTGCCACCGTAAATTCTCGAATCGAAAAAGCGCGTCAAAAAATGAACGCACCATGCGCGGGCGGCT CCCAGTC                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM607772             [                                                                                               ccgACATGATCGCCTTTCTGCACCGATGTTTGCAGCTGAAGTATACATTCCACCTTAACGCGATCACGTTGAGTCGTTCGGAGGTTTTGCTGCACAAGTATGGAGAGTTTGCGTACGACTACATGGAGGCGCTCCAAAACTGGGCCTGCCTGACATATTATGACCAAAACGTGAAGAAAATACAGCTGCCCTACAACCAGACCACTGCAGCGCCGGCACTAACGACGGAGCAGAAGTTTGAAAAGAAGAAAGAGCTTTCTAAACGATTGGCAGAGATCAATGCACGGCGGCGTGAGGAACGACTGGCGCAGGATGAGGAATTGCTAATGCAGCTACAGCAGCTAGAAGAGTCCGCGGAAGATGGAGAGGACATTCGCGATGGTTTGGTCGAGCACAGCATCAAAGACGTGGGTGAGCTGAAACGAATGATTGCCACCGTAAATGCTCGAATCGAAAAAGCGCGCCAAAAAATGAACGCACCATGCGCGGGCGGCT CCCAGTCGCAGCTGCAATCCGATTCGGACAAATTATTACAACCCCCGCCCAACATGTCTGTGGGTCGAGTGGGTCGAGGAAAC                                                                                                                                                                                                                                            ]
[+] EMBL AL933447             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ccccgagGCTCAAATCGAAAAAGCGCGTC AAAAATGAACGCACCATGCGCGGGCGGCTCCCCAGTCGCAGCTGC ATCCGATTCGGACAAATTATTACAA CCCCGGCCAACATGTCTGT GGTCGAGTGGGTCGAGGAAACGCGCCCGCAAGCGTTNGACGCCCATAATAGAAAAACGACAAGCGCGAAGGCAGCGTAAGCAGGACCTTGCCAAGCGGCGGACGGCAGCCGCTCAGGAGCGAATGCGCATCATTTCCCACCTCGCCCGAAAAGAGAAGGGTAGCGATGATTTCGGAATGCGCGACGAGGACTGGGATGTGTATAAGCAAATCAGTCGCGAAGAGGATAGCGACAATGAGAACGACAGTGAACGTTTG]




>consensus_5229#0
CCGCATCGCCACCGGTTATCACACCACTCACGTCGTGCCAGTGCTGAACGGACGCATGGT
GGTGGAAAATATACGCCGCATAAACATTGGCGGATCGCACATGATCGCCTTTCTGCACCG
ATGTTTGCAGCTGAAGTATACATTCCACCTTAACGCGATCACGTTGAGTCGTTCGGAGGT
TTTGCTGCACAAGTATGGAGAGTTTGCGTACGACTACATGGAGGCGCTCCAAAACTGGGC
CTGCCTGACATATTATAACCAAAACGTGAAGAAAATACAGCTGCCCTACAACCAGACCAC
TGCAGCGCCGGCACTAACGACGGAGCAGAAGTTTGAAAAGAAGAAAGAGCTTTCTAAACG
ATTGGCAGAGATCAATGCACGGCGGCGTGAGGAACGACTGGCGCAGGATGAGGAATTGCT
AATGCAGCTACAGCAGCTAGAAGAGTCCGCGGAAGATGGAGAGGACATTCGCGATGGTTT
GGTCGAGCACAGCATCAAAGACGTGGGCGAGCTGAAACGAATGATTGCCACCGTAAATGC
TCGAATCGAAAAAGCGCGTCAAAAAATGAACGCACCATGCGCGGGCGGCTCCCAGTCGCA
GCTGCATCCGATTCGGACAAATTATTACAACCCCGCCCAACATGTCTGTGGTCGAGTGGG
TCGAGGAAACGCGCCCGCAAGCGTTNGACGCCCATAATAGAAAAACGACAAGCGCGAAGG
CAGCGTAAGCAGGACCTTGCCAAGCGGCGGACGGCAGCCGCTCAGGAGCGAATGCGCATC
ATTTCCCACCTCGCCCGAAAAGAGAAGGGTAGCGATGATTTCGGAATGCGCGACGAGGAC
TGGGATGTGTATAAGCAAATCAGTCGCGAAGAGGATAGCGACAATGAGAACGACAGTGAA
CGTTTG

consensusID : consensus_5229#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [AGAATTGCCCGAGGTTTTAAACGACTGGCGCAGGATGAGGAATTGCTAATGCAGTTACAGCAGCTAGCAAGCAGTCCGCGGAAGATGGAGAGGACATTCGCGATGGTTTGGTCGAGCACAGCATCAAAGACGTGGGCGAGCTGAAACTGAATGATTGCCACCGTAAATTCTCGCAATCGAAAAAGCGCGTCAAAAAATGAACGCACCATGCTGCGGGCTGGCTCCCAGTCGCAGCTGCAATCCCGATTCGGACAAATTATTACAAGCCCCGGNCCAACAGTGTACTAGGTGGTCGAGTGGGTCGAGGCACAACGCGCCGCAAGCGTGACGCCATAATAGAAAAACGACAAGACGCGAAGGCAGCGTAAGCAGGACCTTGCCAATGCCGGCTGGACGGCAGCCGCTCAGGAGCGAATGCGCATCATTATCCCACCTCGCCCGCACAAAGAGCACAGGGTAGCGACTGATTCTCGGCAAATGCGCGCAACGCAAGGAACCTNGGGCACTTGCTGCGTACTTACCCGCCNCAACNCTCCANGCTCGCCGAAACGCACNGGACTACTGCGNAACCCACTGACCAACTNACCNCTGAACACGCTCTGCGCTNGCGAAG]

[+] EMBL AL695993             [AGAATTGCCCGAGGTTTTAAACGACTGGCGCAGGATGAGGAATTGCTAATGCAGTTACAGCAGCTAGCAAGCAGTCCGCGGAAGATGGAGAGGACATTCGCGATGGTTTGGTCGAGCACAGCATCAAAGACGTGGGCGAGCTGAAACTGAATGATTGCCACCGTAAATTCTCGCAATCGAAAAAGCGCGTCAAAAAATGAACGCACCATGCTGCGGGCTGGCTCCCAGTCGCAGCTGCAATCCCGATTCGGACAAATTATTACAAGCCCCGGNCCAACAGTGTACTAGGTGGTCGAGTGGGTCGAGGCACAACGCGCCGCAAGCGTGACGCCATAATAGAAAAACGACAAGACGCGAAGGCAGCGTAAGCAGGACCTTGCCAATGCCGGCTGGACGGCAGCCGCTCAGGAGCGAATGCGCATCATTATCCCACCTCGCCCGCACAAAGAGCACAGGGTAGCGACTGATTCTCGGCAAATGCGCGCAACGCAAGGAACCTNGGGCACTTGCTGCGTACTTACCCGCCNCAACNCTCCANGCTCGCCGAAACGCACNGGACTACTGCGNAACCCACTGACCAACTNACCNCTGAACACGCTCTGCGCTNGCGAAG]




>consensus_5229#1
AGAATTGCCCGAGGTTTTAAACGACTGGCGCAGGATGAGGAATTGCTAATGCAGTTACAG
CAGCTAGCAAGCAGTCCGCGGAAGATGGAGAGGACATTCGCGATGGTTTGGTCGAGCACA
GCATCAAAGACGTGGGCGAGCTGAAACTGAATGATTGCCACCGTAAATTCTCGCAATCGA
AAAAGCGCGTCAAAAAATGAACGCACCATGCTGCGGGCTGGCTCCCAGTCGCAGCTGCAA
TCCCGATTCGGACAAATTATTACAAGCCCCGGNCCAACAGTGTACTAGGTGGTCGAGTGG
GTCGAGGCACAACGCGCCGCAAGCGTGACGCCATAATAGAAAAACGACAAGACGCGAAGG
CAGCGTAAGCAGGACCTTGCCAATGCCGGCTGGACGGCAGCCGCTCAGGAGCGAATGCGC
ATCATTATCCCACCTCGCCCGCACAAAGAGCACAGGGTAGCGACTGATTCTCGGCAAATG
CGCGCAACGCAAGGAACCTNGGGCACTTGCTGCGTACTTACCCGCCNCAACNCTCCANGC
TCGCCGAAACGCACNGGACTACTGCGNAACCCACTGACCAACTNACCNCTGAACACGCTC
TGCGCTNGCGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5229#0      CCGCATCGCCACCGGTTATCACACCACTCACGTCGTGCCAGTGCTGAACGGACGCATGGT 60
consensus_5229#1      ------------------------------------------------------------
                                                                                  

consensus_5229#0      GGTGGAAAATATACGCCGCATAAACATTGGCGGATCGCACATGATCGCCTTTCTGCACCG 120
consensus_5229#1      ------------------------------------------------------------
                                                                                  

consensus_5229#0      ATGTTTGCAGCTGAAGTATACATTCCACCTTAACGCGATCACGTTGAGTCGTTCGGAGGT 180
consensus_5229#1      ------------------------------------------------------------
                                                                                  

consensus_5229#0      TTTGCTGCACAAGTATGGAGAGTTTGCGTACGACTACATGGAGGCGCTCCAAAACTGGGC 240
consensus_5229#1      ------------------------------------------------------------
                                                                                  

consensus_5229#0      CTGCCTGACATATTATAACCAAAACGTGAAGAAAATACAGCTGCCCTACAACCAGACCAC 300
consensus_5229#1      ------------------------------------------------------------
                                                                                  

consensus_5229#0      TGCAGCGCCGGCACTAACGACGGAGCAGAAGTTTGAAAAGAAGAAAGAGCTTTCTAAACG 360
consensus_5229#1      ------------------------------------------------------------
                                                                                  

consensus_5229#0      ATTGGCAGAGATCAATGCACGGCGGCGTGAGGAACGACTGGCGCAGGATGAGGAATTGCT 420
consensus_5229#1      ----------AGAATTGCCCGAGGTTTTA---AACGACTGGCGCAGGATGAGGAATTGCT 47
                                *  * *** **  *   *    ****************************

consensus_5229#0      AATGCAGCTACAGCAGCTAGAAG--AGTCCGCGGAAGATGGAGAGGACATTCGCGATGGT 478
consensus_5229#1      AATGCAGTTACAGCAGCTAGCAAGCAGTCCGCGGAAGATGGAGAGGACATTCGCGATGGT 107
                      ******* ************ *   ***********************************

consensus_5229#0      TTGGTCGAGCACAGCATCAAAGACGTGGGCGAGCTGAAAC-GAATGATTGCCACCGTAAA 537
consensus_5229#1      TTGGTCGAGCACAGCATCAAAGACGTGGGCGAGCTGAAACTGAATGATTGCCACCGTAAA 167
                      **************************************** *******************

consensus_5229#0      TGCTCG-AATCGAAAAAGCGCGTCAAAAAATGAACGCACCATGC-GCGGGC-GGCTCCCA 594
consensus_5229#1      TTCTCGCAATCGAAAAAGCGCGTCAAAAAATGAACGCACCATGCTGCGGGCTGGCTCCCA 227
                      * **** ************************************* ****** ********

consensus_5229#0      GTCGCAGCTGCA--TCCGATTCGGACAAATTATTACAACCCC--GCCCAACA-TGTCT-- 647
consensus_5229#1      GTCGCAGCTGCAATCCCGATTCGGACAAATTATTACAAGCCCCGGNCCAACAGTGTACTA 287
                      ************   *********************** ***  * ****** ***    

consensus_5229#0      -GTGGTCGAGTGGGTCGAGGAAACGCGC-CCGCAAGCGTTNGACGCCCATAATAGAAAAA 705
consensus_5229#1      GGTGGTCGAGTGGGTCGAGGCACAACGCGCCGCAAGCGT--GACGCC-ATAATAGAAAAA 344
                       ******************* *   *** **********  ****** ************

consensus_5229#0      CGACAAG-CGCGAAGGCAGCGTAAGCAGGACCTTGCCAAG--CGGC-GGACGGCAGCCGC 761
consensus_5229#1      CGACAAGACGCGAAGGCAGCGTAAGCAGGACCTTGCCAATGCCGGCTGGACGGCAGCCGC 404
                      ******* *******************************   **** *************

consensus_5229#0      TCAGGAGCGAATGCGCATCATT-TCCCACCTCGCCCGAAAAGAGA----AGGGTAGCGA- 815
consensus_5229#1      TCAGGAGCGAATGCGCATCATTATCCCACCTCGCCCGCACAAAGAGCACAGGGTAGCGAC 464
                      ********************** ************** * * ***    ********** 

consensus_5229#0      TGATT-TCGG--AATGCGCG----ACGAGGA--CTGGGATGTGTATAAGCAAATCAGTCG 866
consensus_5229#1      TGATTCTCGGCAAATGCGCGCAACGCAAGGAACCTNGGGCACTTGCTGCGTACTTACCCG 524
                      ***** ****  ********     * ****  ** **     *       * * *  **

consensus_5229#0      CGAAGAGGATAGCGACAATGAGAACGACAGTGAACGTTTG-------------------- 906
consensus_5229#1      CCNCAACNCTCCANGCTCGCCGAAACGCACNGGACTACTGCGNAACCCACTGACCAACTN 584
                      *    *   *     *     ***   **  * **   **                    

consensus_5229#0      -----------------------------
consensus_5229#1      ACCNCTGAACACGCTCTGCGCTNGCGAAG 613