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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 620 fasta sequence
[ATCGCAGAGGTTAAGGCAGGCGGCGCCATGTTGGAGTTGCATGTTTGCTCAGAAATCGATTTTGAAGTGTGTCGTCCGGTCGTCGTACCGCCGCGTCAAAAAGAGATTGTGAAGTTTTAGCAAGTTTTGACAATTGAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGCGTGTGGTGG-CCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGCGAAATTTTTGTGCAGCGCGG-CCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCGGAACGTAG-CCCATCGG-CCCAACAG-CCTCTTGCTGGACGCGACGGAGGAAGGAAACGGTCGACAAACAGAGCACGGAAGGAGAGCGCAGCGCGTTTGTTCTGGGCGCGCAATTTGGCCGAACCCGA-ACACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTGTGTGTGCATTTCACTGGCCGGTGTCTCTGCTGCGTACAACCAAGACGACGGCGGACTGGTGTACACTGGTCGTGTGCAGAANGAACGAGCTACTAGCCGCCT]
[+] EMBL AL696286 [ATCGCAGAGGTTAAGGCAGGCGGCGCCATGTTGGAGTTGCATGTTTGCTCAGAAATCGATTTTGAAGTGTGTCGTCCGGTCGTCGTACCGCCGCGTCAAAAAGAGATTGTGAAGTTTTAGCAAGTTTTGACAATTGAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGCGTGTGGTGG CCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGCGAAATTTTTGTGCAGCGCGG CCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCGGAACGTAG CCCATCGG CCCAACAG CCTCTTGCTGGACGCGACGGAGGAAGGAAACGGTCGACAAACAGAGCACGGAAGGAGAGCGCAGCGCGTTTGTTCTGGGCGCGCAATTTGGCCGAACCCGA ACACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTGTGTGTGCATTTCACTGGCCGGTGTCTCTGCTGCGTACAACCAAGACGACGGCGGACTGGTGTACACTGGTCGTGTGCAGAANGAACGAGCTACTAGCCGCCT]
[+] EMBL BM628965 [ ccGCATGTTTGCTCAGAAATCGATTTTGAAGTGTGTC TCCGGTCGTCGTACCGCCGCGTCAAAAAGAGATTGTGAAGTTTTAGCAAGTTTTGACAATTGAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACG GTGTGGTGGCCCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGCGAAATTTTTGTGCAGCGCGGCCCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCGGAACGTAGCCCCATCGGCCCCAACAGCCCTCTTGCTGGACGCGACGGAGGAAGGAAACGGTCGACAAACAGAGCACGGAAGGAGAGCGC GCGCGTTTGTTCTGGGCGCGCAATTTGGCCGACCCCGACACACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTGTGTGTGCATTTCACTGG CGGTGTCTCTGCTGC TACAA CAAGACGACGGCGGA TGGTGT CA TGGTCGTGTGCAG ]
consensusID : consensus_5235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 518 fasta sequence
[GGCAAGAATCCGGCACGANGGNANTTAGCAAGTTTTGACAATTGCCAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGGTGTGGTGGCCCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGCGAAATTTTTGTGCAGCGCGGCCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCGGAACGTAGCCCCATCGGGCCCAAGCAGNGCCTCTTGCTGGACGCGACGGAGGAAGGAAACGGTCGACGAAACAGAGCACGGAAGGAGAGCGCGCGCGTTTGTTCTGGGCGGCGCAAGTTTGGCCGAGNCCCGAGCAGACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTAGTGTGTGCATTTCACTGGCGGTGTCTCGTGCGTGNTACAACAAGACGACGGCCGGATGGTGTCATGGGTCGTGTGCAGAA]
[+] EMBL BX468157 [GGCAAGAATCCGGCACGANGGNANTTAGCAAGTTTTGACAATTGCCAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGGTGTGGTGGCCCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGCGAAATTTTTGTGCAGCGCGGCCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCGGAACGTAGCCCCATCGGGCCCAAGCAGNGCCTCTTGCTGGACGCGACGGAGGAAGGAAACGGTCGACGAAACAGAGCACGGAAGGAGAGCGCGCGCGTTTGTTCTGGGCGGCGCAAGTTTGGCCGAGNCCCGAGCAGACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTAGTGTGTGCATTTCACTGGCGGTGTCTCGTGCGTGNTACAACAAGACGACGGCCGGATGGTGTCATGGGTCGTGTGCAGAA]
[+] EMBL BM589927 [ ccgGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGGTGTGGTGGCCCCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5235#0 ATCGCAGAGGTTAAGGCAGGCGGCGCCATGTTGGAGTTGCATGTTTGCTCAGAAATCGAT 60
consensus_5235#1 ------------------------------------------------------------
consensus_5235#0 TTTGAAGTGTGTCGTCCGGTCGTCGTACCGCCGCGTCAAAAAGAGATTGTGAAGTT--TT 118
consensus_5235#1 ----------------------------------GGCAAGAATCCGGCACGANGGNANTT 26
* *** ** ** * **
consensus_5235#0 AGCAAGTTTTGACAATTG--AAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTG 176
consensus_5235#1 AGCAAGTTTTGACAATTGCCAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTG 86
****************** ****************************************
consensus_5235#0 ACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGCGTGTGGT 236
consensus_5235#1 ACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACG-GTGTGGT 145
**************************************************** *******
consensus_5235#0 GGCCCC-TCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGC 295
consensus_5235#1 GGCCCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGC 205
****** *****************************************************
consensus_5235#0 GAAATTTTTGTGCAGCGCGGCCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCG 355
consensus_5235#1 GAAATTTTTGTGCAGCGCGGCCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCG 265
************************************************************
consensus_5235#0 GAACGTAGCCC-ATCGG-CCCAAC---AGCCTCTTGCTGGACGCGACGGAGGAAGGAAAC 410
consensus_5235#1 GAACGTAGCCCCATCGGGCCCAAGCAGNGCCTCTTGCTGGACGCGACGGAGGAAGGAAAC 325
*********** ***** ***** ********************************
consensus_5235#0 GGTCGAC-AAACAGAGCACGGAAGGAGAGCGCAGCGCGTTTGTTCTGGGCG-CGCAA-TT 467
consensus_5235#1 GGTCGACGAAACAGAGCACGGAAGGAGAGCGC-GCGCGTTTGTTCTGGGCGGCGCAAGTT 384
******* ************************ ****************** ***** **
consensus_5235#0 TGGCCGA-ACCCGAACA--CATGACGGATTGTGCGTTCCCGGCGTGTGTGCGT-GTGTGT 523
consensus_5235#1 TGGCCGAGNCCCGAGCAGACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTAGTGTGT 444
******* ***** ** ********************************** ******
consensus_5235#0 GCATTTCACTGGCCGGTGTCTC-TGCTGCGTACAACCAAGACGACGGCGGACTGGTGTAC 582
consensus_5235#1 GCATTTCACTGGC-GGTGTCTCGTGCGTGNTACAAC-AAGACGACGGCCGGATGGTGT-C 501
************* ******** *** ****** *********** * ****** *
consensus_5235#0 ACTGGTCGTGTGCAGAANGAACGAGCTACTAGCCGCCT 620
consensus_5235#1 ATGGGTCGTGTGCAGAA--------------------- 518
* **************
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||