cluster # 5250

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Anopheles gambiae
cluster # 5250 cluster # 5250 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5250#0 length = 900 sequences # 3

consensus_5250#1 length = 429 sequences # 1

consensusID : consensus_5250#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 900
fasta sequence

                              [AGCGACGAAGGGCGATCATAAGAAGGTGGACAAGCTAGTGAAAGACATTTACGGCGGCGATTACGAGCGGTTCGGGCTGCCCGGCGAGCTGGTCGCGTCAAGCTTCGGACAGATGCATCTACAGGAAAGGCGGCAAAGCG-TAGCCAAGGAAGATCTGGCCCACGCCATCCTCGTGACGATCACCAACAACATTGGTTCGATCGCACGCATGTGCGCAAGCAATGAGAAGATCGAGAAGGTGGTGTTTGTGGGCAACTTTCTGCGCGTGAACCCAATATCGATGAAGCTGCTCGCGTACGCGATGGACTACTGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGGGTTACTTCGGTGCAGTCGGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCGGTGATTTACTTACTTAGACTAGTAGATAGGAAGGTAACGAAACAGTGATGGGAGTGGGGTGACGCGAGAGAAAAAGGGCAATAGGCGCCGGCGGAGATGCCTTTCTCTCGTGTTTGTTTTACTACGCGCTAAATTAGCTTGTTCGTTTTGATCTAGTTCTTGTAAAAAGAGAGAGAGAGAGAGCGCGAGAGAGATCTTCTACACAATTGAGTGATAGCTTTTGAAGCTTCTGAATCGATTCATTTTCATCATCCTAACCTGCAAAAAGATTAGGCAAAATCAGCTCACTCGCTCTCCCGTAAGGGTCTAGGTGTGACCTAACAGCGGAGTAGCCAACAGAAAACAAGGAAAAACACATTCACTCATGCGAAAATTAGTGAAGCGATGAGCAAAAAAAAAACCCCTGCAAACAATCAGCCCCTTTTGCCGTCAGTCCAATCATAGCGTAACGTAATTTAACTTTGCCAAATCATGTCCCCGTATCCCC]

[+] EMBL BX623316             [AGCGACGAAGGGCGATCATAAGAAGGTGGACAAGCTAGTGAAAGACATTTACGGCGGCGATTACGAGCGGTTCGGGCTGCCCGGCGAGCTGGTCGCGTCAAGCTTCGGACAGATGCATCTACAGGAAAGGCGGCAAAGCG TAGCCAAGGAAGATCTGGCCCACGCCATCCTCGTGACGATCACCAACAACATTGGTTCGATCGCACGCATGTGCGCAAGCAATGAGAAGATCGAGAAGGTGGTGTTTGTGGGCAACTTTCTGCGCGTGAACCCAATATCGATGAAGCTGCTCGCGTACGCGATGGACTACTGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGGGTTACTTCGGTGCAGTCGGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCGGTGATTTACTTACTTAGACTAGTAGATAGGAAGGTAACGAAACAGTGATGGGAGTGGGTTGACGCGAGAGAAAAAGGGCAATAGGCGCCGGCGGAGATGCCTTTCTCTCGTGTTTGTTTTACTACGCGCTAAATTAGCTTGTTCGTTTTGATCTAGTTCTTGTAAAAAGAGAGAGAGAGAGAGCGCGAGAGAGATCTTCTACACAATTGAGTGATAGCTTTTGAAGCTTCTGAATCGATTCATTTTCATCATCCTAACCTGCAAAAAGATTAGGCAAAATCAGCTCACTCGCTCTCCCGTAAGGGTCTAGGTGTGACCTAACAGCGGAGT                                                                                                                                                             ]
[+] EMBL BM634274             [        ccGGCGATCATAAGAAGGTGGACAAGCTAGTGAAAGACATTTACGGCGGCGATTACGAGCGGTTCGGGCTGCCCGGCGAGCTGGTCGCGTCAAGCTTCGGACAGATGCATCTACAGGAAAGGCGGCAAAGCGTTAG CAAGGAAGATCTGGCCCACGCCATCCTCGTGACGATCACCAACAACATTGGTTCGATCGCACGCATGTGCGCAAGCAATGAGAAGATCGAGAAGGTGGTGTTTGTGGGCAACTTTCTGCGCGTGAACCCAATATCGATGAAGCTGCTCGCGTACGCGATGGACTACTGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGGGTTACTTCGGTGCAGTCGGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCGGTGATTTACTTACTTAGACTAGTAGATAGGAAGGTAACGAAACAGTGATGGGAGTGGGGTGACGCGAGAGAAAAAGGGCAATAGGCGCCGGCGGAGATGCCTTTCTCTCGTGTTTGTTTTACTACGCGCTAAATTAGCTTGTTCGTTTTGATCTAGTTCTTGTAAAAAGAGAGAGAGAGAGAGCGCGAGAGAGATCTTCTACACAATTGAGTGATAGCTTTTGAAGCTTCTGAATCGATTCATTTTCATCATCCTAACCTGCAAAAAGAT                                                                                                                                                                                                                         ]
[+] EMBL BX626531             [                                                                                                                                                                                                                                                             CAACTTTCTGCGCGTGAACCCAATATCGATGAAGCTGCTCGCGTACGCGATGGACTACTGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGGGTTACTTCGGTGCAGTCGGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCGGTGATTTACTTACTTAGACTAGTAGATAGGAAGGTAACGAAACAGTGATGGGAGTGGGGTGACGCGAGAGAAAAAGGGCAATAGGCGCCGGCGGAGATGCCTTTCTCTCGTGTTTGTTTTACTACGCGCTAAATTAGCTTGTTCGTTTTGATCTAGTTCTTGTAAAAAGAGAGAGAGAGAGAGCGCGAGAGAGATCTTCTACACAATTGAGTGATAGCTTTTGAAGCTTCTGAATCGATTCATTTTCATCATCCTAACCTGCAAAAAGATTAGGCAAAATCAGCTCACTCGCTCTCCCGTAAGGTTCTAGGTGTGACCTAACAGCGGAGTAGCCAACAGAAAACAAGGAAAAACACATTCACTCATGCGAAAATTAGTGAAGCGATGAGCAAAAAAAAAACCCCTGCAAACAATCAGCCCCTTTTGCCGTCAGTCCAATCATAGCGTAACGTAATTTAACTTTGCCAAATCATGTCCCCGTATCCCC]




>consensus_5250#0
AGCGACGAAGGGCGATCATAAGAAGGTGGACAAGCTAGTGAAAGACATTTACGGCGGCGA
TTACGAGCGGTTCGGGCTGCCCGGCGAGCTGGTCGCGTCAAGCTTCGGACAGATGCATCT
ACAGGAAAGGCGGCAAAGCGTAGCCAAGGAAGATCTGGCCCACGCCATCCTCGTGACGAT
CACCAACAACATTGGTTCGATCGCACGCATGTGCGCAAGCAATGAGAAGATCGAGAAGGT
GGTGTTTGTGGGCAACTTTCTGCGCGTGAACCCAATATCGATGAAGCTGCTCGCGTACGC
GATGGACTACTGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGGGTTACTT
CGGTGCAGTCGGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCGGTGATTT
ACTTACTTAGACTAGTAGATAGGAAGGTAACGAAACAGTGATGGGAGTGGGGTGACGCGA
GAGAAAAAGGGCAATAGGCGCCGGCGGAGATGCCTTTCTCTCGTGTTTGTTTTACTACGC
GCTAAATTAGCTTGTTCGTTTTGATCTAGTTCTTGTAAAAAGAGAGAGAGAGAGAGCGCG
AGAGAGATCTTCTACACAATTGAGTGATAGCTTTTGAAGCTTCTGAATCGATTCATTTTC
ATCATCCTAACCTGCAAAAAGATTAGGCAAAATCAGCTCACTCGCTCTCCCGTAAGGGTC
TAGGTGTGACCTAACAGCGGAGTAGCCAACAGAAAACAAGGAAAAACACATTCACTCATG
CGAAAATTAGTGAAGCGATGAGCAAAAAAAAAACCCCTGCAAACAATCAGCCCCTTTTGC
CGTCAGTCCAATCATAGCGTAACGTAATTTAACTTTGCCAAATCATGTCCCCGTATCCCC

consensusID : consensus_5250#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence

                              [GCAGAATCGCACGAGGTTGNTGCAGCTTCGGACAGATGCATCTACAGGAAAGGCGGCAAAGCGTTAGCAAGGAAGATCTGGCCCACGCCATCCTCGTGACGATCACCAACAACATTGGTTCGATCGCACGCATGTGCGCAAGCAATGAGAAGATCGAGAAGGTAGGGTGTGACAAGCAAAAAAGGCTTCTATTGCACATTAACTGCAATGCTGATCCATTTCCAGGTGGTGTNATGTAGGGCAACTTTCTGCGCGTGAACCCAATATCGATGCAAGCTGCTCGCGTACGCGATGGACTACTGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGGGTTACTTCGGTGCAGTCGGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCGGTGATTTACTTACTTAGACTAGTAGA]

[+] EMBL AL696657             [GCAGAATCGCACGAGGTTGNTGCAGCTTCGGACAGATGCATCTACAGGAAAGGCGGCAAAGCGTTAGCAAGGAAGATCTGGCCCACGCCATCCTCGTGACGATCACCAACAACATTGGTTCGATCGCACGCATGTGCGCAAGCAATGAGAAGATCGAGAAGGTAGGGTGTGACAAGCAAAAAAGGCTTCTATTGCACATTAACTGCAATGCTGATCCATTTCCAGGTGGTGTNATGTAGGGCAACTTTCTGCGCGTGAACCCAATATCGATGCAAGCTGCTCGCGTACGCGATGGACTACTGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGGGTTACTTCGGTGCAGTCGGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCGGTGATTTACTTACTTAGACTAGTAGA]




>consensus_5250#1
GCAGAATCGCACGAGGTTGNTGCAGCTTCGGACAGATGCATCTACAGGAAAGGCGGCAAA
GCGTTAGCAAGGAAGATCTGGCCCACGCCATCCTCGTGACGATCACCAACAACATTGGTT
CGATCGCACGCATGTGCGCAAGCAATGAGAAGATCGAGAAGGTAGGGTGTGACAAGCAAA
AAAGGCTTCTATTGCACATTAACTGCAATGCTGATCCATTTCCAGGTGGTGTNATGTAGG
GCAACTTTCTGCGCGTGAACCCAATATCGATGCAAGCTGCTCGCGTACGCGATGGACTAC
TGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGGGTTACTTCGGTGCAGTC
GGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCGGTGATTTACTTACTTAG
ACTAGTAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5250#0      AGCGACGAAGGGCGATCATAAGAAGGTGGACAAGCTAGTGAAAGACATTTACGGCGGCGA 60
consensus_5250#1      ------------------------------------------------------------
                                                                                  

consensus_5250#0      TTACGAGCGGTTCGGGCTGCCCGGCGAGCTGGTCGCGTCAAGCTTCGGACAGATGCATCT 120
consensus_5250#1      -------------GCAGAATCGCACGAGGTTGNTGC----AGCTTCGGACAGATGCATCT 43
                                   *      *   **** * *  **    ********************

consensus_5250#0      ACAGGAAAGGCGGCAAAGCGTAGCCAAGGAAGATCTGGCCCACGCCATCCTCGTGACGAT 180
consensus_5250#1      ACAGGAAAGGCGGCAAAGCGTTAGCAAGGAAGATCTGGCCCACGCCATCCTCGTGACGAT 103
                      *********************   ************************************

consensus_5250#0      CACCAACAACATTGGTTCGATCGCACGCATGTGCGCAAGCAATGAGAAGATCGAGAAGGT 240
consensus_5250#1      CACCAACAACATTGGTTCGATCGCACGCATGTGCGCAAGCAATGAGAAGATCGAGAAGGT 163
                      ************************************************************

consensus_5250#0      ------------------------------------------------------------
consensus_5250#1      AGGGTGTGACAAGCAAAAAAGGCTTCTATTGCACATTAACTGCAATGCTGATCCATTTCC 223
                                                                                  

consensus_5250#0      ----GGTGTT-TGT-GGGCAACTTTCTGCGCGTGAACCCAATATCGATG-AAGCTGCTCG 293
consensus_5250#1      AGGTGGTGTNATGTAGGGCAACTTTCTGCGCGTGAACCCAATATCGATGCAAGCTGCTCG 283
                          *****  *** ********************************** **********

consensus_5250#0      CGTACGCGATGGACTACTGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGG 353
consensus_5250#1      CGTACGCGATGGACTACTGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGG 343
                      ************************************************************

consensus_5250#0      GTTACTTCGGTGCAGTCGGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCG 413
consensus_5250#1      GTTACTTCGGTGCAGTCGGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCG 403
                      ************************************************************

consensus_5250#0      GTGATTTACTTACTTAGACTAGTAGATAGGAAGGTAACGAAACAGTGATGGGAGTGGGGT 473
consensus_5250#1      GTGATTTACTTACTTAGACTAGTAGA---------------------------------- 429
                      **************************                                  

consensus_5250#0      GACGCGAGAGAAAAAGGGCAATAGGCGCCGGCGGAGATGCCTTTCTCTCGTGTTTGTTTT 533
consensus_5250#1      ------------------------------------------------------------
                                                                                  

consensus_5250#0      ACTACGCGCTAAATTAGCTTGTTCGTTTTGATCTAGTTCTTGTAAAAAGAGAGAGAGAGA 593
consensus_5250#1      ------------------------------------------------------------
                                                                                  

consensus_5250#0      GAGCGCGAGAGAGATCTTCTACACAATTGAGTGATAGCTTTTGAAGCTTCTGAATCGATT 653
consensus_5250#1      ------------------------------------------------------------
                                                                                  

consensus_5250#0      CATTTTCATCATCCTAACCTGCAAAAAGATTAGGCAAAATCAGCTCACTCGCTCTCCCGT 713
consensus_5250#1      ------------------------------------------------------------
                                                                                  

consensus_5250#0      AAGGGTCTAGGTGTGACCTAACAGCGGAGTAGCCAACAGAAAACAAGGAAAAACACATTC 773
consensus_5250#1      ------------------------------------------------------------
                                                                                  

consensus_5250#0      ACTCATGCGAAAATTAGTGAAGCGATGAGCAAAAAAAAAACCCCTGCAAACAATCAGCCC 833
consensus_5250#1      ------------------------------------------------------------
                                                                                  

consensus_5250#0      CTTTTGCCGTCAGTCCAATCATAGCGTAACGTAATTTAACTTTGCCAAATCATGTCCCCG 893
consensus_5250#1      ------------------------------------------------------------
                                                                                  

consensus_5250#0      TATCCCC 900
consensus_5250#1      -------