cluster # 5253

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5253 cluster # 5253 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5253#0 length = 799 sequences # 2

consensus_5253#1 length = 381 sequences # 1
consensus_5253#2 length = 329 sequences # 1

consensusID : consensus_5253#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 799
fasta sequence

                              [GGCCAGAATCGGCACGAGGTTGAAAAATCCGGCCAAACCATTCCCGCTCAACACGGACGTGGGTGTGCTGAAGTGGCGCTACCAGACACAGGATGAATCTGCCATTCCGTTGACGATCAATTGTTGGCCATCGGAAAATGCCGAGGGCGGTTGTGATGTGAATATTGAGTACGAGCTCGAGCACACACGGCTGGAGCTGCAGGACGTTTGCATCACGATTCCATTACCAATGGGTATTACGCCATCGATTGCCGAATGCGACGGTGACTACAATCACGATTCGCGAAAGAACCAGCTGCTGTGGAACCTTCCGGTGATCGATGCTTCCAGCAAACAGGGGCTCGATGGAATTCAGTGTGCCGAGCTCCATTCCGGGTGACTTTTTCCCGCTTGATGTTACATTCTCGTCAAAGATTCCCTATGCTGAGCTAGCGCCCGCAAAGGTACTGCTGGTCGACGACGGTAGCGAGGTGAAATTCTCGGCCGAAACAGTTTTCTACACGGATAAGTTTGAAATAGTGTAAGCTGTGTCGCGGGATGGCTGTCCTGCAATGTTTCTTCTCGCGATCGCGGTAACAGATCATTGCGTGAATTATACATATATCATTATATTTCTGCTTACACTTGATGCCGCAAATTCCAGCAGTACAGAGACGAGGGGTATACGGAAGGAAANATTGACTTACAGTACATAATTATTACACTAGGGAAAGCTGTTCGGAGAAAGCTGTGTAAAGTGCGCGCCGGCTCTCCGGTTCAAATAGCGGAATTTTGGCCTTTTGAAGTCCGTNGTTGAGCA]

[+] EMBL BX467748             [GGCCAGAATCGGCACGAGGTTGAAAAATCCGGCCAAACCATTCCCGCTCAACACGGACGTGGGTGTGCTGAAGTGGCGCTACCAGACACAGGATGAATCTGCCATTCCGTTGACGATCAATTGTTGGCCATCGGAAAATGCCGAGGGCGGTTGTGATGTGAATATTGAGTACGAGCTCGAGCACACACGGCTGGAGCTGCAGGACGTTTGCATCACGATTCCATTACCAATGGGTATTACGCCATCGATTGCCGAATGCGACGGTGACTACAATCACGATTCGCGAAAGAACCAGCTGCTGTGGAACCTTCCGGTGATCGATGCTTCCAGCAAACAGGGGCTCGATGGAATTCAGTGTGCCGAGCTCCATTCCGGGTGACTTTTTCCCGCTTGATGTTACATTCTCGTCAAAGATTCCCTATGCTGAGCTAGCGCCCGCAAAGGTACTGCTGGTCGACGACGGTAGCGAGGTGAAATTCTCGGCCGAAACAGTTTTCTACACGGATAAGTTTGAAATAGTGTAAGCTGTGTCGCGGGATGGCTGTCCTGCAATGTTTCTTCTCGCGATCGCGGTAACAGATCATTGCGTGAATTATACATATATCATTATATTTCTGCTTACACTTGATGCCGCAAATTCCAGCAGTACAGAGACGAGGGGTATACGGAAGGAAANATTGACTTACAGTACATAATTATTACACTAGGGAAAGCTGTTCGGAGAAAGCTGTGTAAAGTGCGCGCCGGCTCTCCGGTTCAAATAGCGGAATTTTGGCCTTTTGAAGTCCGTNGTTGAGCA]
[+] EMBL BX613846             [                                                                                                                                CATCGGAAAATGCCGAGGGCGGTTGTGATGTGAATATTGAGTACGAGCTCGAGCACACACGGCTGGAGCTGCAGGACGTTTGCATCACGATTCCATGACCAAGGGGGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]




>consensus_5253#0
GGCCAGAATCGGCACGAGGTTGAAAAATCCGGCCAAACCATTCCCGCTCAACACGGACGT
GGGTGTGCTGAAGTGGCGCTACCAGACACAGGATGAATCTGCCATTCCGTTGACGATCAA
TTGTTGGCCATCGGAAAATGCCGAGGGCGGTTGTGATGTGAATATTGAGTACGAGCTCGA
GCACACACGGCTGGAGCTGCAGGACGTTTGCATCACGATTCCATTACCAATGGGTATTAC
GCCATCGATTGCCGAATGCGACGGTGACTACAATCACGATTCGCGAAAGAACCAGCTGCT
GTGGAACCTTCCGGTGATCGATGCTTCCAGCAAACAGGGGCTCGATGGAATTCAGTGTGC
CGAGCTCCATTCCGGGTGACTTTTTCCCGCTTGATGTTACATTCTCGTCAAAGATTCCCT
ATGCTGAGCTAGCGCCCGCAAAGGTACTGCTGGTCGACGACGGTAGCGAGGTGAAATTCT
CGGCCGAAACAGTTTTCTACACGGATAAGTTTGAAATAGTGTAAGCTGTGTCGCGGGATG
GCTGTCCTGCAATGTTTCTTCTCGCGATCGCGGTAACAGATCATTGCGTGAATTATACAT
ATATCATTATATTTCTGCTTACACTTGATGCCGCAAATTCCAGCAGTACAGAGACGAGGG
GTATACGGAAGGAAANATTGACTTACAGTACATAATTATTACACTAGGGAAAGCTGTTCG
GAGAAAGCTGTGTAAAGTGCGCGCCGGCTCTCCGGTTCAAATAGCGGAATTTTGGCCTTT
TGAAGTCCGTNGTTGAGCA

consensusID : consensus_5253#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [GCGAGGTGAAATTCTCGGCCGAAACAGTTTTCTACACGGATAAGTTTGAAATAGTGTAAGCTGTGTCGCGGGATGGCTGTCCTGCAATGTTTCTTCTCGCGATCGCGGTAACAGATCGTTGCGTGAATTATACATATATCATTATATTTCTGCTTACTCTTGATGCCGCAATTCCACACAGCCACGAGGGGTATAGGAAGAAAATGAAAAAATAATAATATAAATAGGGAAGCTGTTCGGAGAAGCTGTGTAAGTGCGCGCGCTCTCGTTCAAATAGCGAATTTTGCCTTTGAGTCGTTGTGAGCAACGGACTCTCATGGATAAGATGATGGTAGTAGTAGCGTTCAAGATCAACACTTTCCTGTATGCCTGTTGCGTTTG]

[+] EMBL BX617260             [GCGAGGTGAAATTCTCGGCCGAAACAGTTTTCTACACGGATAAGTTTGAAATAGTGTAAGCTGTGTCGCGGGATGGCTGTCCTGCAATGTTTCTTCTCGCGATCGCGGTAACAGATCGTTGCGTGAATTATACATATATCATTATATTTCTGCTTACTCTTGATGCCGCAATTCCACACAGCCACGAGGGGTATAGGAAGAAAATGAAAAAATAATAATATAAATAGGGAAGCTGTTCGGAGAAGCTGTGTAAGTGCGCGCGCTCTCGTTCAAATAGCGAATTTTGCCTTTGAGTCGTTGTGAGCAACGGACTCTCATGGATAAGATGATGGTAGTAGTAGCGTTCAAGATCAACACTTTCCTGTATGCCTGTTGCGTTTG]




>consensus_5253#1
GCGAGGTGAAATTCTCGGCCGAAACAGTTTTCTACACGGATAAGTTTGAAATAGTGTAAG
CTGTGTCGCGGGATGGCTGTCCTGCAATGTTTCTTCTCGCGATCGCGGTAACAGATCGTT
GCGTGAATTATACATATATCATTATATTTCTGCTTACTCTTGATGCCGCAATTCCACACA
GCCACGAGGGGTATAGGAAGAAAATGAAAAAATAATAATATAAATAGGGAAGCTGTTCGG
AGAAGCTGTGTAAGTGCGCGCGCTCTCGTTCAAATAGCGAATTTTGCCTTTGAGTCGTTG
TGAGCAACGGACTCTCATGGATAAGATGATGGTAGTAGTAGCGTTCAAGATCAACACTTT
CCTGTATGCCTGTTGCGTTTG

consensusID : consensus_5253#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence

                              [CTCGAGGCAGATCGCCAGAGGTNNTAGCAGGACGTTTGCATCACGACTTCCATTACCAATGGGTATTACGCCATCGATTGCCGAATGCGACGGTGACTACAATCACGATTCGCGAAAGAACCAGCTGCTGTGGAACCTTCCGGTGATCGATGCTTCCAGCAAACAGGGGCTCGATGGAATTCACGTGTGCCGAAGCTCCATTCACTGGCGTGAACTTTATTTCACCCGGCTTGATAGGTTTACATTTCTCGGTCAACAAAGAAAATTTTCACCCGTAAATGGCGCGCTTGANAGACCCTTAAANACAAAGGACACTCGCGGGGCAAAAA]

[+] EMBL AL696759             [CTCGAGGCAGATCGCCAGAGGTNNTAGCAGGACGTTTGCATCACGACTTCCATTACCAATGGGTATTACGCCATCGATTGCCGAATGCGACGGTGACTACAATCACGATTCGCGAAAGAACCAGCTGCTGTGGAACCTTCCGGTGATCGATGCTTCCAGCAAACAGGGGCTCGATGGAATTCACGTGTGCCGAAGCTCCATTCACTGGCGTGAACTTTATTTCACCCGGCTTGATAGGTTTACATTTCTCGGTCAACAAAGAAAATTTTCACCCGTAAATGGCGCGCTTGANAGACCCTTAAANACAAAGGACACTCGCGGGGCAAAAA]




>consensus_5253#2
CTCGAGGCAGATCGCCAGAGGTNNTAGCAGGACGTTTGCATCACGACTTCCATTACCAAT
GGGTATTACGCCATCGATTGCCGAATGCGACGGTGACTACAATCACGATTCGCGAAAGAA
CCAGCTGCTGTGGAACCTTCCGGTGATCGATGCTTCCAGCAAACAGGGGCTCGATGGAAT
TCACGTGTGCCGAAGCTCCATTCACTGGCGTGAACTTTATTTCACCCGGCTTGATAGGTT
TACATTTCTCGGTCAACAAAGAAAATTTTCACCCGTAAATGGCGCGCTTGANAGACCCTT
AAANACAAAGGACACTCGCGGGGCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5253#0      GGCCAGAATCGGCACGAGGTTGAAAAATCCGGCCAAACCATTCCCGCTCAACACGGACGT 60
consensus_5253#1      ------------------------------------------------------------
consensus_5253#2      ------------------------------------------------------------
                                                                                  

consensus_5253#0      GGGTGTGCTGAAGTGGCGCTACCAGACACAGGATGAATCTGCCATTCCGTTGACGATCAA 120
consensus_5253#1      ------------------------------------------------------------
consensus_5253#2      ------------------------------------------------------------
                                                                                  

consensus_5253#0      TTGTTGGCCATCGGAAAATGCCGAGGGCGGTTGTGATGTGAATATTGAGTACGAGCTCGA 180
consensus_5253#1      ------------------------------------------------------------
consensus_5253#2      ------------------------------------------------------------
                                                                                  

consensus_5253#0      GCACACACGGCTGGAGCTGCAGGACGTTTGCATCACGATTCCATTACCAATGGGTATTAC 240
consensus_5253#1      ------------------------------------------------------------
consensus_5253#2      ------------------------------------------------------------
                                                                                  

consensus_5253#0      GCCATCGATTGCCGAATGCGACGGTGACTACAATCACGATTCGCGAAAGAACCAGCTGCT 300
consensus_5253#1      ------------------------------------------------------------
consensus_5253#2      ------------------------------------------------------------
                                                                                  

consensus_5253#0      GTGGAACCTTCCGGTGATCGATGCTTCCAGCAAACAGGGGCTCGATGGAATTCAGTGTGC 360
consensus_5253#1      ------------------------------------------------------------
consensus_5253#2      ------------------------------------------------------------
                                                                                  

consensus_5253#0      CGAGCTCCATTCCGGGTGACTTTTTCCCGCTTGATGTTACATTCTCGTCAAAGATTCCCT 420
consensus_5253#1      ------------------------------------------------------------
consensus_5253#2      ------------------------------------------------------------
                                                                                  

consensus_5253#0      ATGCTGAGCTAGCGCCCGCAAAGGTACTGCTGGTCGACGACGGTAGCGAGGTGAAATTCT 480
consensus_5253#1      ---------------------------------------------GCGAGGTGAAATTCT 15
consensus_5253#2      ------------------------------------------------------------
                                                                                  

consensus_5253#0      CGGCCGAAACAGTTTTCTACACGGATAAGTTTGAAATAGT-GTAAGCTGTGTCGCGGGAT 539
consensus_5253#1      CGGCCGAAACAGTTTTCTACACGGATAAGTTTGAAATAGT-GTAAGCTGTGTCGCGGGAT 74
consensus_5253#2      --------------CTCGAGGCAGATC-GCCAGAGGTNNTAGCAGGACGT-TTGCATCAC 44
                                     ** *  * ***  *   **  *  * * * *  ** * **   * 

consensus_5253#0      GGCTGTCCTGCAATGTTTCTTCTCGCGATCGCGGTAACAGATCATTGCGTGAATTATA-- 597
consensus_5253#1      GGCTGTCCTGCAATGTTTCTTCTCGCGATCGCGGTAACAGATCGTTGCGTGAATTATA-- 132
consensus_5253#2      GACT-TCCATTACCAATGGGTATTACGCCATCGATTGCCGAATGCGACGGTGACTACAAT 103
                      * ** ***   *    *   * *  **    ** *  * **      **   * ** *  

consensus_5253#0      CATATATCATTATATTTCTGCTTACACTTGATGCCGCAAAT--TCCAGCAGTACAGAGAC 655
consensus_5253#1      CATATATCATTATATTTCTGCTTACTCTTGATGCCGCAA-T--TCCA----CACAGCCAC 185
consensus_5253#2      CACGATTCGCGAAAGAACCAGCTGCTGTGGAACCTTCCGGTGATCGATGCTTCCAGCAAA 163
                      **    **   * *   *    * *  * **  *  *   *  ** *      ***  * 

consensus_5253#0      GAGGGGTATACGGAAGGAAANATTGACTTACAGTACATAATTATTACACTAGGGAAAGCT 715
consensus_5253#1      GAGGGGTATA-GGAAGAAAATG---------AAAAAATAATAATATAAATAGGGAA-GCT 234
consensus_5253#2      CAGGGGCTCGATGGAATTCACG-----TGTGCCGAAGCTCCATTCACTGGCGTGAACTTT 218
                       *****      * *    *              *        *       * ***   *

consensus_5253#0      GTTCGGAGAAAGCTGTGTAAAGTGCGCGCCGGCTCTCCGGTTCAAATAGCGGAATTTTGG 775
consensus_5253#1      GTTCGGAGAA-GCTGTGTAA-GTGCGCGC--GCTCTC--GTTCAAATAGCG-AATTTTG- 286
consensus_5253#2      ATTTCACCCG-GCTTGATAG-GTTTACAT---TTCTC--GGTCAACAAAGAAAATTTTCA 271
                       **        ***   **  **   *      ****  * ****  *    ******  

consensus_5253#0      CCTTTTGAAGTCCGTNGTTGAGCA------------------------------------ 799
consensus_5253#1      -CCTTTGAG--TCGTTGT-GAGCAACGGACTCTCATGGATAAGATGATGGTAGTAGTAGC 342
consensus_5253#2      -CCCGTAAA---TGGCGC-GCTTGANAGACCCTTAAANACAA----AGGACACTCGCGGG 322
                       *   * *     *  *  *                                        

consensus_5253#0      ---------------------------------------
consensus_5253#1      GTTCAAGATCAACACTTTCCTGTATGCCTGTTGCGTTTG 381
consensus_5253#2      GCAAAAA-------------------------------- 329