cluster # 5259

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5259 cluster # 5259 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5259#0 length = 662 sequences # 2

consensus_5259#1 length = 499 sequences # 1
consensus_5259#2 length = 335 sequences # 1

consensusID : consensus_5259#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 662
fasta sequence

                              [CCGCGGACGCGTGGGCTGCAGCGAGAAGCACACACACTCTCGCTCTCCCTCCGATCCCGACCAGCAGCTGCTCAGTGTTATTTTGCGTAGTTTTAACCACCTGTGTGTATCTCTTCTCGTGTCCATTTTTGCGGGATCAATTGATAAGATTAGAGCGGGAGCTGCTGCTGAAAGTGATAAGTGGTGTA------TCGGGTTCGGGGCGACCGGTTGCTTCACGACTCGGCATCAGTGAGCAAAGATCAGTTTAGGCAACGAGTTGCACGATCCTTAGTTTATCGTTCCGACTACGTACGGCACCCAAGATGAGCAAAATGTTGAACGAAATCTGTGATATGCTGGACGGATACACCGGCCGAGATAAGATTATTCGCACACTATGCTACACCACAAAGCTAGCCTCGGGGCTGTATGCACAGTCCGACCCGGGGCGTGCCAAAAAACTGGCCATATTTAGCTCGAAAATGTCCCAAACACGTGCCACGCTGCGCCTGTTCGACGATTTGCCCATGCTGGCGTACAGTCTGAGCTACGGCTGTGGCAGCAAGGAGCCGGACCGCTGGATGGGCCTGATTGGGTTCGTCACGAATCTGATCGATCACGCGTACTACCCGGTGGACAAGATCTGTTGGCTGATCGAGCACAATCTGCTGAACGTGGAGAAC]

[+] EMBL BM643488             [CCGCGGACGCGTGGGCTGCAGCGAGAAGCACACACACTCTCGCTCTCCCTCCGATCCCGACCAGCAGCTGCTCAGTGTTATTTTGCGTAGTTTTAACCACCTGTGTGTATCTCTTCTCGTGTCCATTTTTGCGGGATCAATTGATAAGATTAGAGCGGGAGCTGCTGCTGAAAGTGATAAGTGGTGTA      TCGGGTTCGGGGCGACCGGTTGCTTCACGACTCGGCATCAGTGAGCAAAGATCAGTTTAGGCAACGAGTTGCACGATCCTTAGTTTATCGTTCCGACTACGTACGGCACCCAAGATGAGCAAAATGTTGAACGAAATCTGTGATATGCTGGACGGATACACCGGCCGAGATAAGATTATTCGCACACTATGCTACACCACAAAGCTAGCCTCGGGGCTGTATGCACAGTCCGACCCGGGGCGTGCCAAAAAACTGGCCATATTTAGCTCGAAAATGTCCCAAACACGTGCCACGCTGCGCCTGTTCGACGATTTGCCCATGCTGGCGTACAGTCTGAGCTACGGCTGTGGCAGCAAGGAGCCGGACCGCTGGATGGGCCTGATTGGGTTCGTCACGAATCTGATCGATCACGCGTACTACCCGGTGGAC                                             ]
[+] EMBL CNS09AFY             [                                                               agAGCTGCTCAGTG TATTTTGTGTATTTTTAACCACCTGTGTGTATCTCTTCTCGTGTCCATTTTTGCGGGATCAATTGATAAGATTAGAGCGGGAGCTGCTGCTGAAAGTGATAAGTGTTGTATCGGGTTCGGGTTCGGGGCGACCGGTTGCCTCACGACTCGGCATCAGTGAGCAAAGATCAGTTTAGGCAACGAGTTGCATGATCCTTAGTTTATCGTTCGGACTACGTACGGCACCCAAGATGAGCAAAATGTTGAACGAAATCTGTGATATGCTGGACGGATATACCGGCCGAGATAAGATTATTCGCACACTATGCTACACCACAAAGCTAGCCTCGGGGCTGTATGCACAGTCCGACCCGGGGCGTGCCAAAAAACTGGCCATATTTAGCTCGAAAATGTCCCAAACACGTGCCACGCTGCGCCTGTTCGACGATTTGCCCATGCTGGCGTACAGTCTGAGCTACGGCTGTGGCAGCAAGGAGCCGGACCGCTGGATGGGTCTGATCGGGTTCGTCACGAATCTGATCGATCACGCGTACTACCCGGTGGACAAGATCTGTTGGCTGATCGAGCACAATCTGCTGAACGTGGAGAAC]




>consensus_5259#0
CCGCGGACGCGTGGGCTGCAGCGAGAAGCACACACACTCTCGCTCTCCCTCCGATCCCGA
CCAGCAGCTGCTCAGTGTTATTTTGCGTAGTTTTAACCACCTGTGTGTATCTCTTCTCGT
GTCCATTTTTGCGGGATCAATTGATAAGATTAGAGCGGGAGCTGCTGCTGAAAGTGATAA
GTGGTGTATCGGGTTCGGGGCGACCGGTTGCTTCACGACTCGGCATCAGTGAGCAAAGAT
CAGTTTAGGCAACGAGTTGCACGATCCTTAGTTTATCGTTCCGACTACGTACGGCACCCA
AGATGAGCAAAATGTTGAACGAAATCTGTGATATGCTGGACGGATACACCGGCCGAGATA
AGATTATTCGCACACTATGCTACACCACAAAGCTAGCCTCGGGGCTGTATGCACAGTCCG
ACCCGGGGCGTGCCAAAAAACTGGCCATATTTAGCTCGAAAATGTCCCAAACACGTGCCA
CGCTGCGCCTGTTCGACGATTTGCCCATGCTGGCGTACAGTCTGAGCTACGGCTGTGGCA
GCAAGGAGCCGGACCGCTGGATGGGCCTGATTGGGTTCGTCACGAATCTGATCGATCACG
CGTACTACCCGGTGGACAAGATCTGTTGGCTGATCGAGCACAATCTGCTGAACGTGGAGA
AC

consensusID : consensus_5259#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence

                              [AAAGCAACAGAAATGTAACCGCCTTATGATGGGTGGCACATTTTAAACGCCAGACCGGTTTGTTTACCTCCACGCGGCAAAAAGGCACGCATGGTGTGTGGGTGAATGTGATAAATGAGTACCTCCACTGTTAAATTTGTTTAAGGGCAGCTCCCTCGTTTTACGTGTGTGCCTGAGCTTTTTCTTAAAACTTTTTCTATAAAAAGATATGTTAAAATGGAAATAATGGCATTAAAATCCTTTTTTATCCCAACAGATTATTCGCACACTATGCTACACCACAAAGCTAGCCTCGGGGCTGTATGCACAGTCCGACCCGGGGCGTGCCAAAAAACTGGCCATATTTAGCTCGAAAATGTCCCAAACACGTGCAACGCTGCGCCTGTTCGACGATTTGCCCATGCTGGCGTACAGTCTGAGCTACGGCTGTGGCAGCAAGGAGCCGGACCGCTGGATGGGTCTGATCGGGTTCGTCACGAATCTGATCGATCACGCTACT]

[+] EMBL BX616595             [AAAGCAACAGAAATGTAACCGCCTTATGATGGGTGGCACATTTTAAACGCCAGACCGGTTTGTTTACCTCCACGCGGCAAAAAGGCACGCATGGTGTGTGGGTGAATGTGATAAATGAGTACCTCCACTGTTAAATTTGTTTAAGGGCAGCTCCCTCGTTTTACGTGTGTGCCTGAGCTTTTTCTTAAAACTTTTTCTATAAAAAGATATGTTAAAATGGAAATAATGGCATTAAAATCCTTTTTTATCCCAACAGATTATTCGCACACTATGCTACACCACAAAGCTAGCCTCGGGGCTGTATGCACAGTCCGACCCGGGGCGTGCCAAAAAACTGGCCATATTTAGCTCGAAAATGTCCCAAACACGTGCAACGCTGCGCCTGTTCGACGATTTGCCCATGCTGGCGTACAGTCTGAGCTACGGCTGTGGCAGCAAGGAGCCGGACCGCTGGATGGGTCTGATCGGGTTCGTCACGAATCTGATCGATCACGCTACT]




>consensus_5259#1
AAAGCAACAGAAATGTAACCGCCTTATGATGGGTGGCACATTTTAAACGCCAGACCGGTT
TGTTTACCTCCACGCGGCAAAAAGGCACGCATGGTGTGTGGGTGAATGTGATAAATGAGT
ACCTCCACTGTTAAATTTGTTTAAGGGCAGCTCCCTCGTTTTACGTGTGTGCCTGAGCTT
TTTCTTAAAACTTTTTCTATAAAAAGATATGTTAAAATGGAAATAATGGCATTAAAATCC
TTTTTTATCCCAACAGATTATTCGCACACTATGCTACACCACAAAGCTAGCCTCGGGGCT
GTATGCACAGTCCGACCCGGGGCGTGCCAAAAAACTGGCCATATTTAGCTCGAAAATGTC
CCAAACACGTGCAACGCTGCGCCTGTTCGACGATTTGCCCATGCTGGCGTACAGTCTGAG
CTACGGCTGTGGCAGCAAGGAGCCGGACCGCTGGATGGGTCTGATCGGGTTCGTCACGAA
TCTGATCGATCACGCTACT

consensusID : consensus_5259#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence

                              [GGCAGAATCGCCCGAGGTGAAGACGAATCCTTAGTTTATCGTTCCGACTACGTACGGTACCCCAAGATGAGCAAAATGTTGAACGAAATCTGTGATATGCTGGACGGATACACCGGGCCGAGATAACGATTATTCGNACACTATGCTACACCACAAAGCTAAGCCTCGGAGGCTGTATGCACAGTCCGACCCGGGGCGTGCCAAAAAACTGGGCATATTTAGCTCGAAAATGTCCCAAACACGTGCCACGCTGCGCCTGTTCGACGATTTGCGCCATGCTGGCGTACAGTCTGAGCTACGGCTGTGGCAGCAAGGAGCCGGACCGCTGGATGGGC]

[+] EMBL AL697022             [GGCAGAATCGCCCGAGGTGAAGACGAATCCTTAGTTTATCGTTCCGACTACGTACGGTACCCCAAGATGAGCAAAATGTTGAACGAAATCTGTGATATGCTGGACGGATACACCGGGCCGAGATAACGATTATTCGNACACTATGCTACACCACAAAGCTAAGCCTCGGAGGCTGTATGCACAGTCCGACCCGGGGCGTGCCAAAAAACTGGGCATATTTAGCTCGAAAATGTCCCAAACACGTGCCACGCTGCGCCTGTTCGACGATTTGCGCCATGCTGGCGTACAGTCTGAGCTACGGCTGTGGCAGCAAGGAGCCGGACCGCTGGATGGGC]




>consensus_5259#2
GGCAGAATCGCCCGAGGTGAAGACGAATCCTTAGTTTATCGTTCCGACTACGTACGGTAC
CCCAAGATGAGCAAAATGTTGAACGAAATCTGTGATATGCTGGACGGATACACCGGGCCG
AGATAACGATTATTCGNACACTATGCTACACCACAAAGCTAAGCCTCGGAGGCTGTATGC
ACAGTCCGACCCGGGGCGTGCCAAAAAACTGGGCATATTTAGCTCGAAAATGTCCCAAAC
ACGTGCCACGCTGCGCCTGTTCGACGATTTGCGCCATGCTGGCGTACAGTCTGAGCTACG
GCTGTGGCAGCAAGGAGCCGGACCGCTGGATGGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5259#0      CCGCGGACGCGTGGGCTGCAGCGAGAAGCACACACACTCTCGCTCTCCCTCCGATCCCGA 60
consensus_5259#2      ------------------------------------------------------------
consensus_5259#1      ------------------------------------------------------------
                                                                                  

consensus_5259#0      CCAGCAGCTGCTCAGTGTTATTTTGCGTAGTTTTAACCACCTGTGTGTATCTCTTCTCGT 120
consensus_5259#2      ------------------------------------------------------------
consensus_5259#1      --------------------------AAAGCAACAGAAATGTAACCGCCTTATGATGGGT 34
                                                                                  

consensus_5259#0      GTCCATTTTTGCGGGATCAATTGATAAGATTAGAGCGGGAGCTGCTGCTGAAAGTGATAA 180
consensus_5259#2      ------------------------------------------------------------
consensus_5259#1      GGCACATTTTAAACGCCAGACCGGTTTGTTTACCTCCA----CGCGGCAAAAAGGCACGC 90
                                                                                  

consensus_5259#0      GTGGTGTATCGG-GTTCGGGGCGACCGGTTGCTTCACGACTCGGCATCAGTGAGCAAAGA 239
consensus_5259#2      ----------------------------------------------------GGCAGA-A 7
consensus_5259#1      ATGGTGTGTGGGTGAATGTGATAAATGAGTACCTCCACTGTTAAATTTGTTTAAGGGCAG 150
                                                                                  

consensus_5259#0      TCAGTTTAGGCAACGAGTTGCACGATCCTTAGTTTATCGTTCCGACTACGTACGGCACCC 299
consensus_5259#2      TCGCCCGAGGTGAAGACG-----AATCCTTAGTTTATCGTTCCGACTACGTACGGTACCC 62
consensus_5259#1      CTCCCTCGTTTTACGTGT-----GTGCCTGAGCTTTTTCTTAAAACTTTTTCTATAAA-- 203
                                  * *           *** ** ** *  **   ***   *     *   

consensus_5259#0      -AAGATGAGCAAAATGTTGAACGAAATCTGTGATATGCTGGACGGATACACCGG-CCGAG 357
consensus_5259#2      CAAGATGAGCAAAATGTTGAACGAAATCTGTGATATGCTGGACGGATACACCGGGCCGAG 122
consensus_5259#1      -AAGATATGTTAAA------ATGGAAATAATGGCAT--TAAAATCCTTTTTTATCCCAAC 254
                       *****  *  ***      * * **    **  **  *  *    *        ** * 

consensus_5259#0      ATAA-GATTATTCGCACACTATGCTACACCACAAAGCTA-GCCTCGG-GGCTGTATGCAC 414
consensus_5259#2      ATAACGATTATTCGNACACTATGCTACACCACAAAGCTAAGCCTCGGAGGCTGTATGCAC 182
consensus_5259#1      A----GATTATTCGCACACTATGCTACACCACAAAGCTA-GCCTCGG-GGCTGTATGCAC 308
                      *    ********* ************************ ******* ************

consensus_5259#0      AGTCCGACCCGGGGCGTGCCAAAAAACTGGCCATATTTAGCTCGAAAATGTCCCAAACAC 474
consensus_5259#2      AGTCCGACCCGGGGCGTGCCAAAAAACTGGGCATATTTAGCTCGAAAATGTCCCAAACAC 242
consensus_5259#1      AGTCCGACCCGGGGCGTGCCAAAAAACTGGCCATATTTAGCTCGAAAATGTCCCAAACAC 368
                      ****************************** *****************************

consensus_5259#0      GTGCCACGCTGCGCCTGTTCGACGATTTGC-CCATGCTGGCGTACAGTCTGAGCTACGGC 533
consensus_5259#2      GTGCCACGCTGCGCCTGTTCGACGATTTGCGCCATGCTGGCGTACAGTCTGAGCTACGGC 302
consensus_5259#1      GTGCAACGCTGCGCCTGTTCGACGATTTGC-CCATGCTGGCGTACAGTCTGAGCTACGGC 427
                      **** ************************* *****************************

consensus_5259#0      TGTGGCAGCAAGGAGCCGGACCGCTGGATGGGCCTGATTGGGTTCGTCACGAATCTGATC 593
consensus_5259#2      TGTGGCAGCAAGGAGCCGGACCGCTGGATGGGC--------------------------- 335
consensus_5259#1      TGTGGCAGCAAGGAGCCGGACCGCTGGATGGGTCTGATCGGGTTCGTCACGAATCTGATC 487
                      ********************************                            

consensus_5259#0      GATCACGCGTACTACCCGGTGGACAAGATCTGTTGGCTGATCGAGCACAATCTGCTGAAC 653
consensus_5259#2      ------------------------------------------------------------
consensus_5259#1      GATCACGC-TACT----------------------------------------------- 499
                                                                                  

consensus_5259#0      GTGGAGAAC 662
consensus_5259#2      ---------
consensus_5259#1      ---------