cluster # 5265

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Anopheles gambiae
cluster # 5265 cluster # 5265 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5265#0 length = 770 sequences # 3

consensus_5265#1 length = 292 sequences # 1

consensusID : consensus_5265#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 770
fasta sequence

                              [TGAATTTCTATTGGGTTGTTCCAGGAAGCACAATGAAGTGGTCAAAATTCATTTTACTCTCAGCCTTCTGTTACTGTTTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGATGGACGTGGTCCAGCGCCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCATAATTAACTTCGTGTACTCGGTCAAATACAGCTTGGTGCAAAAGACGGACGAGTTCTACAAACAAGTGATCAGCGCAAAGGAAGGATCTCTCGCCAATTCGATCGCCCTCGAAGATGAGCTACTTTATCAGCTCAACCATCAGACCCAGGCGGTGGATAGCAGCTGTCTGGACTTCCTGAAATCGATCGTCGATAGTAACATTAACGTGGCGGGCGTTGGATTTTCCAACTGCATCAATGACGTTGAACGTGGCGTAGAGAGCGAGCTACATCAAGCACAGAAGCAGCTCAACGTGGACGAATCGGAAATATTCTACCAAAGTTTGTTGGACGTGTTCGAGGGTGAAAATGTGATCGCCGGTCCGGACGCGATCGCTGCGAAGCTGCAGAAGAAGGCAGCAGAAATTGATGCATTCGCTAGTGATTACATGTCGGGAGTATTCAAAGTAGTGGAACAGNTCTCCTCGAAGTTATGGGATTTGCGAAACGGCTATCAAAGGNGTCTGAATGTGAACGAATCNGGTCTGAAGATGGCGTACGATGTTTCGAANAATCAGCTAACCAGCACTTGCCTAGGTTCAATTGTTAAT]

[+] EMBL BX626928             [TGAATTTCTATTGGGTTGTTCCAGGAAGCACAATGAAGTGGTCAAAATTCATTTTACTCTCAGCCTTCTGTTACTGTTTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGATGGACGTGGTCCAGCGCCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCATAATTAACTTCGTGTACTCGGTCAAATACAGCTTGGTGCAAAAGACGGACGAGTTCTACAAACAAGTGATCAGCGCAAAGGAAGGATCTCTCGCCAATTCGATCGCCCTCGAAGATGAGCTACTTTATCAGCTCAACCATCAGACCCAGGCGGTGGATAGCAGCTGTCTGGACTTCCTGAAATCGATCGTCGATAGTAACATTAACGTGGCGGGCGTTGGATTTTCCAACTGCATCAATGACGTTGAACGTGGCGTAGAGAGCGAGCTACATCAAGCACAGAAGCAGCTCAACGTGGACGAATCGGAAATATTCTACCAAAGTTTGTTGGACGTGTTCGAGGGTGAAAATGTGATCGCCGGTCCGGACGCGATCGCTGCGAAGCTGCAGAAGAAGGCAGCAGAAATTGATGCATTCGCTAGTGATTACATGTCGGGAGTATTCAAAGTAGTGGAACAGNTCTCCTCGAAGTTATG                                                                                                                   ]
[+] EMBL BX623413             [    TTTCTATTGGGTTGTTCCAGGAAGCACAATGAAGTGGTCAAAATTCATTTTACTCTCAGCCTTCTGTTACTGTTTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGATGGACGTGGTCCAGCGCCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCATAATTAACTTCGTGTACTCGGTCAAATACAGCTTGGTGCAAAAGACGGACGAGTTCTACAAACAAGTGATCAGCGCAAAGGAAGGATCTCTCGCCAATTCGATCGCCCTCGAAGATGAGCTACTTTATCAGCTCAACCATCAGACCCAGGCGGTGGATAGCAGCTGTCTGGACTTCCTGAAATCGATCGTCGATAGTAACATTAACGTGGCGGGCGTTGGATTTTCCAACTGCATCAATGACGTTGAACGTGGCGTAGAGAGCGAGCTACATCAAGCACAGAAGCAGCTCAACGTGGACGAATCGGAAATATTCTACCAAAGTTTGTTGGACGTGTTCGAGGGTGAAAATGTGATCGCCGGTCCGGACGCGATCGCTGCGAAGCTGCAGAAGAAGGCAGCAGAAATTGATGCATTCGCTAGTGATTACA                                                                                                                                                                 ]
[+] EMBL BX620068             [                                  GAAGTGGTCAAAATTCATTTTACTCTCAGCCTTCTGTTACTGTTTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGATGGACGTGGTCCAGCGCCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCATAATTAACTTCGTGTACTCGGTCAAATACAGCTTGGTGCAAAAGACGGACGAGTTCTACAAACAAGTGATCAGCGCAAAGGAAGGATCTCTCGCCAATTCGATCGCCCTCGAAGATGAGCTACTTTATCAGCTCAACCATCAGACCCAGGCGGTGGATAGCAGCTGTCTGGACTTCCTGAAATCGATCGTCGATAGTAACATTAACGTGGCGGGCGTTGGATTTTCCAACTGCATCAATGACGTTGAACGTGGCGTAGAGAGCGAGCTACATCAAGCACAGAAGCAGCTCAACGTGGACGAATCGGAAATATTCTACCAAAGTTTGTTGGACGTGTTCGAGGGTGAAAATGTGATCGCCGGTCCGGACGCGATCGCTGCGAAGCTGCAGAAGAAGGCAGCAGAAATTGATGCATTCGCTAGTGATTACATGTCGGGAGTATTCAAAGTAGTGGAACAGTTCTCCTCGAAGTTATGGGATTTGCGAAACGGCTATCAAAGGNGTCTGAATGTGAACGAATCNGGTCTGAAGATGGCGTACGATGTTTCGAANAATCAGCTAACCAGCACTTGCCTAGGTTCAATTGTTAAT]




>consensus_5265#0
TGAATTTCTATTGGGTTGTTCCAGGAAGCACAATGAAGTGGTCAAAATTCATTTTACTCT
CAGCCTTCTGTTACTGTTTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGA
TGGACGTGGTCCAGCGCCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCA
TAATTAACTTCGTGTACTCGGTCAAATACAGCTTGGTGCAAAAGACGGACGAGTTCTACA
AACAAGTGATCAGCGCAAAGGAAGGATCTCTCGCCAATTCGATCGCCCTCGAAGATGAGC
TACTTTATCAGCTCAACCATCAGACCCAGGCGGTGGATAGCAGCTGTCTGGACTTCCTGA
AATCGATCGTCGATAGTAACATTAACGTGGCGGGCGTTGGATTTTCCAACTGCATCAATG
ACGTTGAACGTGGCGTAGAGAGCGAGCTACATCAAGCACAGAAGCAGCTCAACGTGGACG
AATCGGAAATATTCTACCAAAGTTTGTTGGACGTGTTCGAGGGTGAAAATGTGATCGCCG
GTCCGGACGCGATCGCTGCGAAGCTGCAGAAGAAGGCAGCAGAAATTGATGCATTCGCTA
GTGATTACATGTCGGGAGTATTCAAAGTAGTGGAACAGNTCTCCTCGAAGTTATGGGATT
TGCGAAACGGCTATCAAAGGNGTCTGAATGTGAACGAATCNGGTCTGAAGATGGCGTACG
ATGTTTCGAANAATCAGCTAACCAGCACTTGCCTAGGTTCAATTGTTAAT

consensusID : consensus_5265#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 292
fasta sequence

                              [GGCAAGAATCCGNCCCGCAGGCTATACAAAGTGTGTGCAAGTGTGTGAATTCTATTGGGTTGTTCAGGAAGCACAATGAAGTGGTCAAAATTCATTTTACTCTCAGCTTCTTGTTACTGTGTTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGATGGACGTGGTCCAGCGCCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCATAATTAACTTCGTGTACTCGGTTCAAATACAGTTTGGGTGCCAAAAAGGAACGGGGAACCGGAAGTTT]

[+] EMBL AL697125             [GGCAAGAATCCGNCCCGCAGGCTATACAAAGTGTGTGCAAGTGTGTGAATTCTATTGGGTTGTTCAGGAAGCACAATGAAGTGGTCAAAATTCATTTTACTCTCAGCTTCTTGTTACTGTGTTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGATGGACGTGGTCCAGCGCCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCATAATTAACTTCGTGTACTCGGTTCAAATACAGTTTGGGTGCCAAAAAGGAACGGGGAACCGGAAGTTT]




>consensus_5265#1
GGCAAGAATCCGNCCCGCAGGCTATACAAAGTGTGTGCAAGTGTGTGAATTCTATTGGGT
TGTTCAGGAAGCACAATGAAGTGGTCAAAATTCATTTTACTCTCAGCTTCTTGTTACTGT
GTTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGATGGACGTGGTCCAGCG
CCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCATAATTAACTTCGTGTA
CTCGGTTCAAATACAGTTTGGGTGCCAAAAAGGAACGGGGAACCGGAAGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5265#0      ---------------------------------------------TGAATTTCTATTGGG 15
consensus_5265#1      GGCAAGAATCCGNCCCGCAGGCTATACAAAGTGTGTGCAAGTGTGTGAATT-CTATTGGG 59
                                                                   ****** ********

consensus_5265#0      TTGTTCCAGGAAGCACAATGAAGTGGTCAAAATTCATTTTACTCTCAGCCTTCTGTTACT 75
consensus_5265#1      TTGTTC-AGGAAGCACAATGAAGTGGTCAAAATTCATTTTACTCTCAGCTTCTTGTTACT 118
                      ****** ****************************************** *  *******

consensus_5265#0      GT-TTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGATGGACGTGGTCCAG 134
consensus_5265#1      GTGTTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGATGGACGTGGTCCAG 178
                      ** *********************************************************

consensus_5265#0      CGCCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCATAATTAACTTCGTG 194
consensus_5265#1      CGCCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCATAATTAACTTCGTG 238
                      ************************************************************

consensus_5265#0      TACTCGGT-CAAATACAGCTTGG-TGCAAAAGACGGACGAGTTCTACAAACAAGTGATCA 252
consensus_5265#1      TACTCGGTTCAAATACAGTTTGGGTGCCAAAAAGGAACGGG------GAACCGGAAGTTT 292
                      ******** ********* **** *** *** * * *** *       ***  *   *  

consensus_5265#0      GCGCAAAGGAAGGATCTCTCGCCAATTCGATCGCCCTCGAAGATGAGCTACTTTATCAGC 312
consensus_5265#1      ------------------------------------------------------------
                                                                                  

consensus_5265#0      TCAACCATCAGACCCAGGCGGTGGATAGCAGCTGTCTGGACTTCCTGAAATCGATCGTCG 372
consensus_5265#1      ------------------------------------------------------------
                                                                                  

consensus_5265#0      ATAGTAACATTAACGTGGCGGGCGTTGGATTTTCCAACTGCATCAATGACGTTGAACGTG 432
consensus_5265#1      ------------------------------------------------------------
                                                                                  

consensus_5265#0      GCGTAGAGAGCGAGCTACATCAAGCACAGAAGCAGCTCAACGTGGACGAATCGGAAATAT 492
consensus_5265#1      ------------------------------------------------------------
                                                                                  

consensus_5265#0      TCTACCAAAGTTTGTTGGACGTGTTCGAGGGTGAAAATGTGATCGCCGGTCCGGACGCGA 552
consensus_5265#1      ------------------------------------------------------------
                                                                                  

consensus_5265#0      TCGCTGCGAAGCTGCAGAAGAAGGCAGCAGAAATTGATGCATTCGCTAGTGATTACATGT 612
consensus_5265#1      ------------------------------------------------------------
                                                                                  

consensus_5265#0      CGGGAGTATTCAAAGTAGTGGAACAGNTCTCCTCGAAGTTATGGGATTTGCGAAACGGCT 672
consensus_5265#1      ------------------------------------------------------------
                                                                                  

consensus_5265#0      ATCAAAGGNGTCTGAATGTGAACGAATCNGGTCTGAAGATGGCGTACGATGTTTCGAANA 732
consensus_5265#1      ------------------------------------------------------------
                                                                                  

consensus_5265#0      ATCAGCTAACCAGCACTTGCCTAGGTTCAATTGTTAAT 770
consensus_5265#1      --------------------------------------