|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5267#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 872 fasta sequence
[CAGAATTGNGCAGAGGTAAGACGAACGAACTGAAGTACGATCGAGATGC-GGAA-GTGCTCTCTGTTGTCGGTGCTGGTGCTGGTGGCAGCAGTCTGCGCCACGGAGGTCGTAGGCATTCGTCCGGCGCTGCGCCAGGATGCCCCCCGGGGTCGCGTTGTTGGGGGAGCTCTCGCCACCGCTGGACAGTTCCCGTACGCCGTCGGGCTGGTAACGCACACCGGAGTCATCTTTACTGGGCGCTGTGCGGGCTCCCTCATTTCTGCCAACTATGTCCTCACGGCGGCGAGCTGCGTGCAGAGTGCCACGTCTGCGTTTGCCTACCTCGGAGGCCTGCGGGTGGACGACCAACCGGAGCAGGGCCGCGAACGACTCCTGATCGAACGCTTCATCCTGCACACGAGCTTTGTGGAGGGGGGCGAAAACTTTGACGTTGCCCTGGGGCGGCTCCCACGCTCTGTCAGCTTCAGCGATCGCATTCGCCCAATACGGCTGGCAAACCGACGCCAGGTGCAGGCCACGTTCGCGGGCCAGCAGGGAACCGTG-TTGGGTGGGGCCGGTTCGGCTCGGGCATTAGCAATTCGGCCGAGCTGCGCTTTGGTCGGGCGGAGATCATTACCAATCTGGCCTGCCGGGTCAGCCTGCCGACGAACACGATCGGCGATGCGCACATGTGCACGGACGGGTCGGTCAGCTCGCCGTGTGCGGGCGATAATGGGGCACCGCTGACGATTGTGGACGCGGACGGCATCACGACGCAGGTCGGCGTGGTTTTCGTTCAACTCCGTGCTTGGGTGTGACGCTTGGACGTGCCCGCTTGCNTATACCCGGCTGTCGGGCCTACCTGGACTGGATCNGTGCCAACTCCGATGTGA]
[+] EMBL AL697146 [CAGAATTGNGCAGAGGTAAGACGAACGAACTGAAGTACGATCGAGATGC GGAATGTGCTCTCTGTTGTCGGTGCTGGTGCTGGTGGCAGCAGTCTGCGCCACGGAGGTCGTAGGCATTCGTCCGGCGCTGCGCCAGGATGCCCCCCGGGGTCGCGTTGTTGGGGGAGCTCTCGCCACCGCTGGACAGTTCCCGTACGCCGTCGGGCTGGTAACGCACACCGGAGTCATCTTTACTGGGCGCTGTGCGGGCTCCCTCATTTCTGCCAACTATGTCCTCACGGCGG GAGCTGCGTGCAGAGTGCCACGTCTGCGTTTGCCTACCTCGGAGGCCTGCGGGTGGACGA CAACCGGAGCAGGGCCGCGAACGACTCCTGATCGAACGCTTCATCCTGCACACGAGCTTTGTGGAGGGGGGCGAAAACTTTGACGTTGCCCTGGGGCGG TCCCACGCTCTGTCAGCTTCAGCGATCGCATTCGCCCAATACGG TGGCAAACCGACGCCAGGTGCAGGCCACGTTCGCGGGCCAGCAGGGAACCGTG TTGGGTGGGGCCGGTTCGGCTCGGGCATTAGCAATTCGGCCGAGCTGCGCT ]
[+] EMBL BX626059 [ CGAGATGCTTGAA GTGCTCTCTGTTGTCGGTGCTGGTGCTGGTGGCAGCAGTCTGCGCCACGGAGGTCGTAGGCATTCGTCCGGCGCTGCGCCAGGATGCCCCCCGGGGTCGCGTTGTTGGGGGAGCTCTCGCCACCGCTGGACAGTTCCCGTACGCCGTCGGGCTGGTAACGCACACCGGAGTCATCTTTACTGGGCGCTGTGCGGGCTCCCTCATTTCTGCCAACTATGTCCTCACGGCGGCGAGCTGCGTGCAGAGTGCCACGTCTGCGTTTGCCTACCTCGGAGGCCTGCGGGTGGACGACCAACCGGAGCAGGGCCGCGAACGACTCCTGATCGAACGCTTCATCCTGCACACGAGCTTTGTGGAGGGGGGCGAAAACTTTGACGTTGCCCTGGGGCGGCTCCCACGCTCTGTCAGCTTCAGCGATCGCATTCGCCCAATACGGCTGCCAAACCGACGCCAGGTGCAGGCCACGTTCGCGGGCCAGCAGGGAACCGTGTTTGGGTGGGGCCGGTTCGGCTCGGGCATTAGCAATTCGGCCGAGCTGCGCTTTGGTCGGGCGGAGATCATTACCAATCTGGCCTGCCGGGTCAGCCTGCCGACGAACACGATCGGCGATGCGCACATGTGCACGGACGGGTCGGTCAGCTCGCCGTGTGCGGGCGATAATGGGGCACCGCTGACGATTGTGGACGCGGACGGCATCACGACGCAGGTCGGCGTGGTTTTCGTTCAACTCCGTGCTTGGGTGTGACGCTTGGACGTGCCCGCTTGCNTATACCCGGCTGTCGGGCCTACCTGGACTGGATCNGTGCCAACTCCGATGTGA]
[+] EMBL BX628962 [ C GGAA GTGCTCTCTGTTGTCGGTGCTGGTGCTGGTGGCAGCAGTCTGCGCCACGGAGGTCGTAGGCATTCGTCCGGCGCTGCGCCAGGATGCCCCCCGGGGTCGCGTTGTTGGGGGAGCTCTCGCCACCGCTGGACAGTTCCCGTACGCCGTCGGGCTGGTAACGCACACCGGAGTCATCTTTACTGGGCGCTGTGCGGGCTCCCTCATTTCTGCCAACTATGTCCTCACGGCGGCGAGCTGCGTGCAGAGTGCCACGTCTGCGTTTGCCTACCTCGGAGGCCTGCGGGTGGACGACCAACCGGAGCAGGGCCGCGAACGACTCCTGATCGAACGCTTCATCCTGCACACGAGCTTTGTGGAGGGGGGCGAAAACTTTGACGTTGCCCTGGGGCGGCTCCCACGCTCTGTCAGCTTCAGCGATCGCATTCNCCCAATACAGCT ]
consensusID : consensus_5267#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence
[CTCAGCAGAATTGGCCCCGAGGTTTAAACAGACGAACGAACTGAAGTACGATCGAGATGCGTGAAGTGCTCTCTGTTGTCGGTGCTGGTGCTGGTGGCAGCAGTCTGCGCCACGGAGGTCGTAGGCATTCGTCCGGCGCTGCGCCAGGATGCCCCCCGGGGTCGCGTTGTTGGGGGAGCTCTCGCCACCGCTGGACAGTTCCCGTACGCCGTCGGGCTGGTAACGCACACCGGAGTCATCTTTACTGGGCGCTGTGCGGGCTCCCTCATTTCTGCAACTATGTCCTCACGGCGGCGAGCTGCGTGCAGAGTGCCACGTACTGCGTTTGCCTACCTCGGAGGCCTGCGCGGTGGACGACCAACCGGAGACAGGGCCGCGAACGACTCCTGATCGAACGCTTCATCCTGCACACGACGCTTTGTAGGAGGGGGGCGAAAACTTTGACGTTGCCCTGGGGCGGNATCCCACGCTCTGTCAGCTTCAGCGATCGCATTCGCCCAATACGGATGCCAAACCGACGCCAGGTGCAAGGGCACGTTACGCCGNGCCCAGCAAGCGAACCGGAGTAAGGGTGGGGCCCGGGTTCGGCTCGGGCCATTANGCAACTNCGGGACCGAAGCTTGCAGCTATATGGTNCNNGGCGCGCCGAATCATTAACCAATTCTTGGCCT]
[+] EMBL AL697209 [CTCAGCAGAATTGGCCCCGAGGTTTAAACAGACGAACGAACTGAAGTACGATCGAGATGCGTGAAGTGCTCTCTGTTGTCGGTGCTGGTGCTGGTGGCAGCAGTCTGCGCCACGGAGGTCGTAGGCATTCGTCCGGCGCTGCGCCAGGATGCCCCCCGGGGTCGCGTTGTTGGGGGAGCTCTCGCCACCGCTGGACAGTTCCCGTACGCCGTCGGGCTGGTAACGCACACCGGAGTCATCTTTACTGGGCGCTGTGCGGGCTCCCTCATTTCTGCAACTATGTCCTCACGGCGGCGAGCTGCGTGCAGAGTGCCACGTACTGCGTTTGCCTACCTCGGAGGCCTGCGCGGTGGACGACCAACCGGAGACAGGGCCGCGAACGACTCCTGATCGAACGCTTCATCCTGCACACGACGCTTTGTAGGAGGGGGGCGAAAACTTTGACGTTGCCCTGGGGCGGNATCCCACGCTCTGTCAGCTTCAGCGATCGCATTCGCCCAATACGGATGCCAAACCGACGCCAGGTGCAAGGGCACGTTACGCCGNGCCCAGCAAGCGAACCGGAGTAAGGGTGGGGCCCGGGTTCGGCTCGGGCCATTANGCAACTNCGGGACCGAAGCTTGCAGCTATATGGTNCNNGGCGCGCCGAATCATTAACCAATTCTTGGCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5267#0 -----CAGAATTGNGCA-GAGGTA-----AGACGAACGAACTGAAGTACGATCGAGATGC 49
consensus_5267#1 CTCAGCAGAATTGGCCCCGAGGTTTAAACAGACGAACGAACTGAAGTACGATCGAGATGC 60
******** * ***** *******************************
consensus_5267#0 G-GAAGTGCTCTCTGTTGTCGGTGCTGGTGCTGGTGGCAGCAGTCTGCGCCACGGAGGTC 108
consensus_5267#1 GTGAAGTGCTCTCTGTTGTCGGTGCTGGTGCTGGTGGCAGCAGTCTGCGCCACGGAGGTC 120
* **********************************************************
consensus_5267#0 GTAGGCATTCGTCCGGCGCTGCGCCAGGATGCCCCCCGGGGTCGCGTTGTTGGGGGAGCT 168
consensus_5267#1 GTAGGCATTCGTCCGGCGCTGCGCCAGGATGCCCCCCGGGGTCGCGTTGTTGGGGGAGCT 180
************************************************************
consensus_5267#0 CTCGCCACCGCTGGACAGTTCCCGTACGCCGTCGGGCTGGTAACGCACACCGGAGTCATC 228
consensus_5267#1 CTCGCCACCGCTGGACAGTTCCCGTACGCCGTCGGGCTGGTAACGCACACCGGAGTCATC 240
************************************************************
consensus_5267#0 TTTACTGGGCGCTGTGCGGGCTCCCTCATTTCTGCCAACTATGTCCTCACGGCGGCGAGC 288
consensus_5267#1 TTTACTGGGCGCTGTGCGGGCTCCCTCATTTCTGC-AACTATGTCCTCACGGCGGCGAGC 299
*********************************** ************************
consensus_5267#0 TGCGTGCAGAGTGCCACGT-CTGCGTTTGCCTACCTCGGAGGCCTGCG-GGTGGACGACC 346
consensus_5267#1 TGCGTGCAGAGTGCCACGTACTGCGTTTGCCTACCTCGGAGGCCTGCGCGGTGGACGACC 359
******************* **************************** ***********
consensus_5267#0 AACCGGAG-CAGGGCCGCGAACGACTCCTGATCGAACGCTTCATCCTGCACACGA-GCTT 404
consensus_5267#1 AACCGGAGACAGGGCCGCGAACGACTCCTGATCGAACGCTTCATCCTGCACACGACGCTT 419
******** ********************************************** ****
consensus_5267#0 TGT-GGAGGGGGGCGAAAACTTTGACGTTGCCCTGGGGCGGC-TCCCACGCTCTGTCAGC 462
consensus_5267#1 TGTAGGAGGGGGGCGAAAACTTTGACGTTGCCCTGGGGCGGNATCCCACGCTCTGTCAGC 479
*** ************************************* *****************
consensus_5267#0 TTCAGCGATCGCATTCGCCCAATACGGCTGGCAAACCGACGCCAGGTGCA-GGCCACGTT 521
consensus_5267#1 TTCAGCGATCGCATTCGCCCAATACGGATGCCAAACCGACGCCAGGTGCAAGGGCACGTT 539
*************************** ** ******************* ** ******
consensus_5267#0 -CGCGGG--CCAGCAGG-GAACCGTGTTGGGTGGGGCCGGTTCGGCTCGGGCATTAGCAA 577
consensus_5267#1 ACGCCGNGCCCAGCAAGCGAACCGGAGTAAGGGTGG--GGCCCGGGTTCGGCTCGGGCCA 597
*** * ****** * ****** * * * ** ** *** * *** ** *
consensus_5267#0 TTCGGCCGAGCTGCGCTTTGGTCGGGCGGAGATCATTACCAATCTGGCCTGCCGGGTCAG 637
consensus_5267#1 TTANGC--AACTNCG--------GGACCGAAGCTTGCAGCTATATGG--TNCNNGGCGCG 645
** ** * ** ** ** * ** * * ** *** * * ** *
consensus_5267#0 CCTGCCGACGAACACGATCGGCGATGCGCACATGTGCACGGACGGGTCGGTCAGCTCGCC 697
consensus_5267#1 CCGAATCATTAAC-CAATTCTTGGCCT--------------------------------- 671
** * *** * ** *
consensus_5267#0 GTGTGCGGGCGATAATGGGGCACCGCTGACGATTGTGGACGCGGACGGCATCACGACGCA 757
consensus_5267#1 ------------------------------------------------------------
consensus_5267#0 GGTCGGCGTGGTTTTCGTTCAACTCCGTGCTTGGGTGTGACGCTTGGACGTGCCCGCTTG 817
consensus_5267#1 ------------------------------------------------------------
consensus_5267#0 CNTATACCCGGCTGTCGGGCCTACCTGGACTGGATCNGTGCCAACTCCGATGTGA 872
consensus_5267#1 -------------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||