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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1482 fasta sequence
[CGCAGGTTATCTGAACACTCCGCACACTTTTTTCCTTTAAAAAGCAGTTTTTATTGAAATAAACCATTCCCTTTTAACAGTATGAACCATCACAAAGCCCAATGCCTTTCCTGATAGTGTACTGAATGTGGCTCGAGTAAATGTGTAAACTGCTGCAATTAAACATGCAGCAACGAAATGTTCTGTATTTGTGCCNGAGCTGCAAGTGACAACTGTGCGGATAAGCTGCCGGAGCTGTTCTGGTTTTGAAGCTACCAGAAGCGCATCAAAGNGATGAAATCAACAGCACACAGTTCAGCCAAATCAAAGTGTCCTCCTTAATTGTTGGGTCTATTTGCATACTGCACCCTGGAAAAGCACCATCTGTTACAGCCTTGGCGCGATNTCCAATCCATTACNTTGCCCTGGGNGCATGNGCCGCTTNTCCCGAAGAACCNGCAGTGGTTAAAAACTNTCCCCGTCGTCACCATATCCGGTTCCTTTCCCTGGGCNCCCATTGCATTTGCGGGGGGACTTGTTTGGATCCACCGGGGGCCAAGAATTACCAGCCAGGCATTGTCCAGGCCTGCGGTGAACACGTGGCGTACCNACCCANTTTAAAACNGGCTTATTGGGGGACTATATCNGTAATANCTCGGACCAGGCAGCACATTTTATACNTTACCATTAAGCCCAAACCCTGGCTACCCTGGGNGACCCATTGGGCTAAAGAGCGAATTNCCCGCCATTACCCCCCGGGGTACACCACGCAGTGGCAAGTCGGNCTGGTGAAGAAACAATGNGGCGCCTTAGGGAGGCTTAGGGGNTTTCGAGGATGTGGAAACGGGTATAAACCTCCCACCTGGTCGCTTAACCCCGGAAAGAGGGACCAACTGAGGGGGATNTAAACGAACCCGAATACTAGGGACTAAAAACCGGAAATTACCACTCTAGGGTTAAAGACGCCATTTGGGGGGANACCCCACTTTATATGGGGGAGANGGACACNAAAACACAACAATTTCTAAACACCAGGGTTATATTATCCACGGGCNCGNCTATTGTGTTACACCAGGAACANAAGCCTAGGACAAAAGCAGGGGANGGNGACTTCACAGACAGGANCAAGGACGGGCAACAAACAAAAGGAGCACGTTACCCAAAACCGCCNCGGGGAAAATAGCCAGGGGAGCGAANAAGCACCCACCACACNNCGGAGTGGAAAAACCACCCCCAACAAGGAGGGCAACAGCAGNGAGATCAAACAACACGGGGGTGAGTCCACNNAAACAAGGGAGCGATNACCANGAGAAAAACCCCAGGGGCGGAGCATATGTGGACCCAGGCAAACGGGCNAACAACAGGGNGATATACACACCGAACAAGACTGGCAGAGAANTAGGACACCCACNGTGTGAATTATCNNCNCCCCCCAAACNGATAGATGANTGNGACCACAAACATGGGGTACAAAAAAAATGGGGCCCAAAANNATGATGCATA]
[+] EMBL AL697309 [CGCAGGTTATCTGAACACTCCGCACACTTTTTTCCTTTAAAAAGCAGTTTTTATTGAAATAAACCATTCCCTTTTAACAGTATGAACCATCACAAAGCCCAATGCCTTTCCTGATAGTGTACTGAATGTGGCTCGAGTAAATGTGTAAACTGCTGCAATTAAACATGCAGCAACGAAATGTTCTGTATTTGTGCCNGAGCTGCAAGTGACAACTGTGCGGATAAGCTGCCGGAGCTGTTCTGGTTTTGAAGCTACCAGAAGCGCATCAAAGNGATGAAATCAACAGCACACAGTTCAGCCAAATCAAAGTGTCCTCCTTAATTGTTGGGTCTATTTGCATACTGCACCCTGGAAAAGCACCATCTGTTACAGCCTTGGCGCGATNTCCAATCCATTACNTTGCCCTGGGNGCATGNGCCGCTTNTCCCGAAGAACCNGCAGTGGTTAAAAACTNTCCCCGTCGTCACCATATCCGGTTCCTTTCCCTGGGCNCCCATTGCATTTGCGGGGGGACTTGTTTGGATCCACCGGGGGCCAAGAATTACCAGCCAGGCATTGTCCAGGCCTGCGGTGAACACGTGGCGTACCNACCCANTTTAAAACNGGCTTATTGGGGGACTATATCNGTAATANCTCGGACCAGGCAGCACATTTTATACNTTACCATTAAGCCCAAACCCTGGCTACCCTGGGNGACCCATTGGGCTAAAGAGCGAATTNCCCGCCATTACCCCCCGGGGTACACCACGCAGTGGCAAGTCGGNCTGGTGAAGAAACAATGNGGCGCCTTAGGGAGGCTTAGGGGNTTTCGAGGATGTGGAAACGGGTATAAACCTCCCACCTGGTCGCTTAACCCCGGAAAGAGGGACCAACTGAGGGGGATNTAAACGAACCCGAATACTAGGGACTAAAAACCGGAAATTACCACTCTAGGGTTAAAGACGCCATTTGGGGGGANACCCCACTTTATATGGGGGAGANGGACACNAAAACACAACAATTTCTAAACACCAGGGTTATATTATCCACGGGCNCGNCTATTGTGTTACACCAGGAACANAAGCCTAGGACAAAAGCAGGGGANGGNGACTTCACAGACAGGANCAAGGACGGGCAACAAACAAAAGGAGCACGTTACCCAAAACCGCCNCGGGGAAAATAGCCAGGGGAGCGAANAAGCACCCACCACACNNCGGAGTGGAAAAACCACCCCCAACAAGGAGGGCAACAGCAGNGAGATCAAACAACACGGGGGTGAGTCCACNNAAACAAGGGAGCGATNACCANGAGAAAAACCCCAGGGGCGGAGCATATGTGGACCCAGGCAAACGGGCNAACAACAGGGNGATATACACACCGAACAAGACTGGCAGAGAANTAGGACACCCACNGTGTGAATTATCNNCNCCCCCCAAACNGATAGATGANTGNGACCACAAACATGGGGTACAAAAAAAATGGGGCCCAAAANNATGATGCATA]
consensusID : consensus_5272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1025 fasta sequence
[CTGGATTTTGTAAACAAACGTGTGCTGATCCGAACGAACCGCACACATTTTTCCCTTTAGAAAAGCAGTTTTTATTGAAATAAACCATTCCCTTTTAACTGTATGAACCATCACAAAGCCCAAGCCTTTCCGATAGTGTACTGAATGTGGCTCGAGTAAAGTGTAAACGCGCAATTAAACAGCAGCAACGAAATGTTCGTATTGGCCGAGCTGAAGGACAACGTGCGGATAGCGCCGGAGCTGTTTGGTTTGAAGCTACCAGAAGCGATAAAGGATGAAATCAACAGAAAGTTAGCAAATAAGGTCCTCCTAAATGTGGGTCTTTGCATCGCCCTGAAAGACATCGTTAAGCTGGGCGATTCAATCATACTGCCCGGCGATGGCGCTTCCCACACCGAGGTAAACTTCCGGTACATCGTCTTCCGCCCCATGATTGGGGATGTGATCACGGGCAAGATACGCAGCTGCAGCCGGGAAGGCGTCCACATAACGCTTGGCTTTTTCGACGACATTCTCATACCACCGTCCGCCCTGCAGCATCCCTCCCGGTACGAGGAGGCGGAACAGGCCTGGGTGTGGGAGTACCCGCTCGAGGACGGTAACACGCACGATCTGTACATGGACATTGGGGAAAACATAAAGTTTCGCGTGTCGGGCGAGGTGTTTGAGGAAAGCTCACCGATTGGACCCCCGGACCAGGAGGTACCGTCCAGCTCGACCGGTGCGAGTACGTCCGGTGGTGCCGGTTCCAGTGGGCAGGAAAGCAATAAGACACCGTACCGTATCGTAGCGGCCATTAACGAGTCCGGTTTGGGGCTGCTTTCCTGGTGGGTACAGCAGGCCCAGGAAGAGGACGAGGAGGGCGGCGAAGAGGAGGAGCAGGAGGAGGAAGAGCAGGAACAGGATTCGGGGGGAGAGAATGAATAAAACCTACTTACCGTTAAAAGCTCGATTTATCATAAAAAAACAGG-AAAAACAACCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTT]
[+] EMBL CNS09DKV [CTGGATTTTGTAAACAAACGTGTGCTGATCCGAACGAACCGCACACATTTTTCCCTTTAGAAAAGCAGTTTTTATTGAAATAAACCATTCCCTTTTAACTGTATGAACCATCACAAAGCCCAAGCCTTTCCGATAGTGTACTGAATGTGGCTCGAGTAAAGTGTAAACGCGCAATTAAACAGCAGCAACGAAATGTTCGTATTGGCCGAGCTGAAGGACAACGTGCGGATAGCGCCGGAGCTGTTTGGTTTGAAGCTACCAGAAGCGATAAAGGATGAAATCAACAGAAAGTTAGCAAATAAGGTCCTCCTAAATGTGGGTCTTTGCATCGCCCTGAAAGACATCGTTAAGCTGGGCGATTCAATCATACTGCCCGGCGATGGCGCTTCCCACACCGAGGTAAACTTCCGGTACATCGTCTTCCGCCCCATGATTGGGGATGTGATCACGGGCAAGATACGCAGCTGCAGCCGGGAAGGCGTCCACATAACGCTTGGCTTTTTCGACGACATTCTCATACCACCGTCCGCCCTGCAGCATCCCTCCCGGTACGAGGAGGCGGAACAGGCCTGGGTGTGGGAGTACCCGCTCGAGGACGGTAATACGCACGATCTGTACATGGACATTGGGGAAAACATAAAGTTTCGCGTGTCGGGCGAGGTGTTTGAGGAAAGCTCACCGATTGGACCCCCGGACCAGGAGGTACCGTCCAGCTCGACCGGTGCGAGTACGTCCGGTGGTGCCGGTTCCAGTGGGCAGGAAAGCAATAAGACACCGTACCGTATCGTAGCGGCCATTAACGAGTCCGGTTTGGGGCTGCTTTCCTGGTGGGTACAGCAGGCCCAGGAAGAGGACGAGGAGGGCGGCGAAGAGGAGGAGCAGGAGGAGGAAGAGCAGGAACAGGATTCGGGGGGAGAGAATGAATAAAACCTACTTACCGTTAAAAGCTCGATTTATCATAAAAAAACAGG AAAAACAACCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTT]
[+] EMBL BX612279 [ ATAGTGTACTGAATGTGGCTCGAGTAAAGTGTAAACGCGCAATTAAACAGCAGCAACGAAATGTTCGTATTGGCCGAGCTGAAGGACAACGTGCGGATAGCGCCGGAGCTGTTTGGTTTGAAGCTACCAGAAGCGATAAAGGATGAAATCAACAGAAAGTTAGCAAATAATGTCCTCCTAAATGTGGGTCTTTGCATCGCCCTGAAAGACATC TTAAGCTGGGCGATTCAATCATACTGCCCGGCGATGGCGCTTCCCACACCGAGGTAAACTTCCGGTACATCGTCTTCCGCCCCATGATTGGGGATGTGATCACGGGCAAGATACGCAGCTGCAGCCGGGAAGGCGTCCACATAACGCTTGGCTTTTTCGACGACATTCTCATACCACCGTCCGCCCTGCAGCATCCCTCCCGGTACGAGGAGGCGGAACAGGCCTGGGTGTGGGAGTACCCGCTCGAGGACGGTAACACGCACGATCTGTACATGGACATTGGGGAAAACATAAAGTTTCGCGTGTCGGGCGAGGTGTTTGAGGAAAGCTCACCGATTGGACCCCCGGACCAGGAGGTACCGTCCAGCTCTACCGGTGCGAGTACGTCCGGTGGTGCCGGTTCCAGTGGGCAGGAAAGCAATAAGACACCGTACCGTATCGTAGCGGCCATTAACGAGTCCGGTTTG ]
[-] EMBL CNS09DKW [ GAGGACGGTAAAACGCACGATCTGTAAATGGAAATTGGGGAAAAAATAAAGTTTCGCGTTTCGGGCGAGGTGTTTGAGGAAAGCTCACCGATTGGACCCCCGGACCAGGAGGTACCGTCCAGCTCGACCGGTGCGAGTACGTCCGGTGGTGCCGGTTCCAGTGGGCAGGAAAGCAATAAGACACCGTACCGTATCGTAGCGGCCATTAACGAGTCCGGTTTGGGGCTGCTTTCCTGGTGGGTACAGCAGGCCCAGGAAGAGGACGAGGAGGGCGGCGAAGAGGAGGAGCAGGAGGAGGAAGAGCAGGAACAGGATTCGGGGGGAGAGAATGAATAAAACCTACTTACCGTTAAAAGCTCGATTTTTCATAAAAAAACAGGAAAAAACAACCGAAAAAAAAAAAAAAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5272#0 ------------------CGCAGGTT-ATCTGAACACTCCGCACACTTTTTTCCTTT--A 39
consensus_5272#1 CTGGATTTTGTAAACAAACGTGTGCTGATCCGAACGAACCGCACACATTTTTCCCTTTAG 60
** * * *** **** ******** ******* **
consensus_5272#0 AAAAGCAGTTTTTATTGAAATAAACCATTCCCTTTTAACAGTATGAACCATCACAAAGCC 99
consensus_5272#1 AAAAGCAGTTTTTATTGAAATAAACCATTCCCTTTTAACTGTATGAACCATCACAAAGCC 120
*************************************** ********************
consensus_5272#0 CAATGCCTTTCCTGATAGTGTACTGAATGTGGCTCGAGTAAATGTGTAAACTGCTGCAAT 159
consensus_5272#1 CAA-GCCTTTCC-GATAGTGTACTGAATGTGGCTCGAGTAAA-GTGTAAAC--GCGCAAT 175
*** ******** ***************************** ******** *****
consensus_5272#0 TAAACATGCAGCAACGAAATGTTCTGTATTTGTGCCNGAGCTGCAAGTGACAACTGTGCG 219
consensus_5272#1 TAAACA-GCAGCAACGAAATGTTC-GTATTGG---CCGAGCTGAAGG--ACAAC-GTGCG 227
****** ***************** ***** * * ****** * * ***** *****
consensus_5272#0 GATAAGCTGCCGGAGCTGTTCTGGTTTTGAAGCTACCAGAAGCGCATCAAAGNGATGAAA 279
consensus_5272#1 GATAG--CGCCGGAGCTGTTTGG--TTTGAAGCTACCAGAAGCG-AT--AAAGGATGAAA 280
**** ************ * ******************* ** ** *******
consensus_5272#0 TCAACAGCACACAGTTCAGCCAAATCAAAGTGTCCTCCTTAATTGTTGGGTCTATTTGCA 339
consensus_5272#1 TCAACAGAA---AGTTAG--CAAATAAG---GTCCTCCTAAATG--TGGGTCT--TTGCA 328
******* * **** ***** * ******** *** ******* *****
consensus_5272#0 TACTGCACCCTGGAAAAGCACCATCTGTTACAGCCTTGGCGCGATNTCCAATCCATTACN 399
consensus_5272#1 T----CGCCCTG-AAAGACATCGTT------AAGCTGGGCG----ATTCAATC----ATA 369
* * ***** *** ** * * * ** **** * ***** *
consensus_5272#0 TTGCCCTGGGNGCATGNGCCGCTTNTCCCGAAGAACCNGCAGTGGTTAAAAACTNTCCCC 459
consensus_5272#1 CTGCCCGGCGATGGCGCTTCCCACACCGAGGTAAACTTCCGGT------ACATCGTCTTC 423
***** * * * * * * * *** * ** * * ** *
consensus_5272#0 GTCGTCACCATATCCGGTTCCTTTCCCTGGGCNCCCATTGCATTTGCGGGGGGACTTGTT 519
consensus_5272#1 --CGCCCCATGATTGGGGATGTGATCACGGGCAAGATACGCAGCTGCAGCCGG----GAA 477
** * * ** ** * * **** *** *** * ** *
consensus_5272#0 TGGATCCACCGGGGGCCAAGAATTACCAGCCAGGCATTGTCCAGGCCTGCGGTGAACACG 579
consensus_5272#1 GGCGTCCACATAACGCTTGGCTTTTTCGAC--GACATTCTC-ATACCACCGTCCGCCCTG 534
* ***** ** * ** * * * **** ** * ** ** * *
consensus_5272#0 TGGCGTACCNACCCANTTTAAAACNGGCTTATTGGGG--GACTATATCNGTAATANCTCG 637
consensus_5272#1 CAGCATCCCT-CCCGGTACGAGG-AGGCGGAACAGGCCTGGGTGTGGGAGTACCCGCTCG 592
** * ** *** * * *** * ** * * * *** ****
consensus_5272#0 GACCAGGCAGCACAT----TTTATACNTTACCATTAAGCCCAAACCCTGGCTACCCTGGG 693
consensus_5272#1 AGGACGGTAACACGCACGATCTGTACATGGACATTGGGGAAAACATAAAGTTTCGCGTGT 652
** * *** * * *** * **** * ** * * * * *
consensus_5272#0 NGACCCATTGGGCTAAAGAGCGAATTNCCCGCCATTACCCCCCGGGGTACACCACGCAGT 753
consensus_5272#1 CGGGCGAGGTGTTTGAGGA--AAGCTCACCG--ATTGGACCCCCGGAC-CAGGAGGTACC 707
* * * * * * ** * * *** *** **** ** ** * * *
consensus_5272#0 GGCAAGTCGGNCTGGTGAAGAAACAATGNGGCGCCTTAGGGAGGCTTAGGGGNTTTCGAG 813
consensus_5272#1 GTCCAGCTCGACCGGTGCGAGTACG---------TCCGGTGGTGCC-----GGTTCCAGT 753
* * ** * * **** ** * * ** * ** *
consensus_5272#0 GATGTGGAAACGGGTATAAACCTCCCACCTGGTCGCTTAACCCCGGAAAGAGGGACCAAC 873
consensus_5272#1 GGGCAGGAAAGCAATA-AGACACCGTACCGTATCG--TAGCGGCCATTAACGAGTCCGGT 810
* ***** ** * ** * *** *** ** * * * * * **
consensus_5272#0 TGAGGGGGATNTAAACGAACCCGAATACTAGGGACTAAAAACCGGAAATTACCACTCTAG 933
consensus_5272#1 TTGGGGCTGCTTTCCTGG---TGGGTACAGCAGGCCCAGGA----AGAGGACGAGGAGGG 863
* *** * * * *** * * * * * * ** * *
consensus_5272#0 GGTTAAAGACGCCATTTGGGGGGANACCCCACTTTATATGGGGGAGANGGACACNAAAAC 993
consensus_5272#1 CGGCGAAGAGGAGGAGCAGGAGGAGG---------AAGAGCAGGAACAGGATTCGGGGGG 914
* **** * ** *** * * *** *** *
consensus_5272#0 ACAACAATTTCTAAACACCAGGGTTATATTATCCACGGGCNCGNCTATTGTGTTACACCA 1053
consensus_5272#1 A-GAGAATGAATAAAACCTA----CTTACCGTTAAAAGCTCGATTTATCATAAAAAAACA 969
* * *** **** * * ** * * * *** * * * **
consensus_5272#0 GGAACANAAGCCTAGGACAAAAGCAGGGGANGGNGACTTCACAGACAGGANCAAGGACGG 1113
consensus_5272#1 GGAAAAACAACCGAAAAAAAAAAAAAAAAAAAAAAAA---AAAAAAAAGGCCAAATGTT- 1025
**** * * ** * * **** * * * * * * * * ***
consensus_5272#0 GCAACAAACAAAAGGAGCACGTTACCCAAAACCGCCNCGGGGAAAATAGCCAGGGGAGCG 1173
consensus_5272#1 ------------------------------------------------------------
consensus_5272#0 AANAAGCACCCACCACACNNCGGAGTGGAAAAACCACCCCCAACAAGGAGGGCAACAGCA 1233
consensus_5272#1 ------------------------------------------------------------
consensus_5272#0 GNGAGATCAAACAACACGGGGGTGAGTCCACNNAAACAAGGGAGCGATNACCANGAGAAA 1293
consensus_5272#1 ------------------------------------------------------------
consensus_5272#0 AACCCCAGGGGCGGAGCATATGTGGACCCAGGCAAACGGGCNAACAACAGGGNGATATAC 1353
consensus_5272#1 ------------------------------------------------------------
consensus_5272#0 ACACCGAACAAGACTGGCAGAGAANTAGGACACCCACNGTGTGAATTATCNNCNCCCCCC 1413
consensus_5272#1 ------------------------------------------------------------
consensus_5272#0 AAACNGATAGATGANTGNGACCACAAACATGGGGTACAAAAAAAATGGGGCCCAAAANNA 1473
consensus_5272#1 ------------------------------------------------------------
consensus_5272#0 TGATGCATA 1482
consensus_5272#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||