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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5281#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 852 fasta sequence
[CCGGAAACAACGCAGCAGCAGTTTTAATCGTGTTTTGCTTGTAAATCAGACAGTAAATATGGCTGAAACTGCGACAACTTCCTCGAAAACGTTTGCCGAAAAGCATGCCGAGCGGATGGCCCGATTGAAGCAACTGCACACACAGCGTAACGAGGCCCGCGCCAGCAACCATCAGGAGGTCATCGCGGAGCACGAGCGCAAGAAGCTGCCCGCAAACTGGGAATCCCGTCAGCGGCAAGCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGGAAGGGCTCGACTACAATCGGGTGAAGATGCTGAACGTGTCCGCGGCGGAGGCTGATCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGCTAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACATTAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGCAGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGCGTAAAAAGAACGTCTTATTTTAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAAGCGACAATTTAAGTTGTAAGCAGTTTTGCT]
[+] EMBL BM614614 [CCGGAAACAACGCAGCAGCAGTTTTAATCGTGTTTTGCTTGTAAATCAGACAGTAAATATGGCTGAAACTGCGACAACTTCCTCGAAAACGTTTGCCGAAAAGCATGCCGAGCGGATGGCCCGATTGAAGCAACTGCACACACAGCGTAACGAGGCCCGCGCCAGCAACCATCAGGAGGTCATCGCGGAGCACGAGCGCAAGAAGCTGCCCGCAAACTGGGAATCCCGTCAGCGGCAAGCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGGAAGGGCTCGACTACAATCGGGTGAAGATGCTGAACGTGTCCGCGGCGGAGGCTGATCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGCTAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACA ]
[+] EMBL AL697573 [ caggctttaCAGCAGTTTTAATCGTGTTTTGCTTGTAAATCAGACAGTAAATATGGCTGAAACTGCGACAACTTCCTCGAAAACGTTTGCCGAAAAGCATGCCGAGCGGATGGCCCGATTGAAGCAACTGCACACACAGCGTAACGAGGCCCGCGCCAGCAACCATCAGGAGGTCATCGCGGAGCACGAGCGCAAGAAGCTGCCCGCAAACTGGGAATCCCGCCAGCGGCAAGCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGAAAGGGCTCGACTACAATCGGGTGAAGATGCTGAACGTGTCCGCGGCGGAGGCTGACCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGT ]
[+] EMBL BX618677 [ TGCCGAGCGGATGGCCCGATTGAAGCAACTGCACACACAGCGTAACGAGGCCCGCGCCAGCAACCATCAGGAGGTCATCGCGGAGCACGAGCGCAAGAAGCTGCCCGCAAACTGGGAATCCCGTCAGCGGCAAGCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGGAAGGGCTCGACTACAATCGGGTGAAGATGCTGAACGTGTCCGCGGCGGAGGCTGATCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGCTAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACATTAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGCAGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGCGTAAAAAGAACGTCTTATTTTAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAAGCGACAATTTAAGTTGTAAGCAGTTTTGCT]
consensusID : consensus_5281#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[ACCTATCCAGGAGGTCATCGCGGAGCACGAGCGCCAAGAAGCTGCCCGCGAAACTGGGAATCCCGCCAGCGGCAAGCCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGAAACGGGCTNGACTACAATCGGGTGAAGATGCTGAACGTGTCCCCGGCGGAGGCTGACCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACCTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGCTAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACATTAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGCAGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGTGTAAAAAGAACGTCTTATTTCAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAAAAAAANTAAAAAAAANGCAGCATG]
[-] EMBL BX466677 [ACCTATCCAGGAGGTCATCGCGGAGCACGAGCGCCAAGAAGCTGCCCGCGAAACTGGGAATCCCGCCAGCGGCAAGCCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGAAACGGGCTNGACTACAATCGGGTGAAGATGCTGAACGTGTCCCCGGCGGAGGCTGACCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACCTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGCTAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACATTAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGCAGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGTGTAAAAAGAACGTCTTATTTCAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAAAAAAANTAAAAAAAANGCAGCATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5281#0 CCGGAAACAACGCAGCAGCAGTTTTAATCGTGTTTTGCTTGTAAATCAGACAGTAAATAT 60
consensus_5281#1 ------------------------------------------------------------
consensus_5281#0 GGCTGAAACTGCGACAACTTCCTCGAAAACGTTTGCCGAAAAGCATGCCGAGCGGATGGC 120
consensus_5281#1 ------------------------------------------------------------
consensus_5281#0 CCGATTGAAGCAACTGCACACACAGCGTAACGAGGCCCGCGCCAGCAACCATC-AGGAGG 179
consensus_5281#1 ----------------------------------------------ACCTATCCAGGAGG 14
* * *** ******
consensus_5281#0 TCATCGCGGAGCACGAGCGC-AAGAAGCTGCCCGC-AAACTGGGAATCCCGTCAGCGGCA 237
consensus_5281#1 TCATCGCGGAGCACGAGCGCCAAGAAGCTGCCCGCGAAACTGGGAATCCCGCCAGCGGCA 74
******************** ************** *************** ********
consensus_5281#0 AGCC-GAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGGAA-GGGCTC 295
consensus_5281#1 AGCCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGAAACGGGCTN 134
**** ********************************************* ** *****
consensus_5281#0 GACTACAATCGGGTGAAGATGCTGAACGTGTCCGCGGCGGAGGCTGATCGCATCGACAAA 355
consensus_5281#1 GACTACAATCGGGTGAAGATGCTGAACGTGTCCCCGGCGGAGGCTGACCGCATCGACAAA 194
********************************* ************* ************
consensus_5281#0 CTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGAC-TACGAGGCACAAACGGC 414
consensus_5281#1 CTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACCTACGAGGCACAAACGGC 254
****************************************** *****************
consensus_5281#0 ACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGA 474
consensus_5281#1 ACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGA 314
************************************************************
consensus_5281#0 GCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCT 534
consensus_5281#1 GCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCT 374
************************************************************
consensus_5281#0 GCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGC 594
consensus_5281#1 GCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGC 434
************************************************************
consensus_5281#0 TAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACAT 654
consensus_5281#1 TAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACAT 494
************************************************************
consensus_5281#0 TAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGC 714
consensus_5281#1 TAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGC 554
************************************************************
consensus_5281#0 AGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGCGTAAAAAGAACGTCT 774
consensus_5281#1 AGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGTGTAAAAAGAACGTCT 614
******************************************** ***************
consensus_5281#0 TATTTTAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAAGCGACAATTTAA 834
consensus_5281#1 TATTTCAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAA---AAAAANTAA 671
***** ****************************************** * ** ***
consensus_5281#0 GTTGTAAGCAGTTTTGCT 852
consensus_5281#1 AAAAAANGCAGCATG--- 686
* **** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||