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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5282#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 614 fasta sequence
[CCGCGCATCAAAAGCAATCGATTCCAACAAGTCTGTTGTCTGATAGTTCGTAGAAAGATAGCATTTTACGCGTAACATTCAGTGGTGCCGAAGAATTATACTACTCCCACCATGTTGCAGGACTGCGACTATGACTACTTCTACGAGGAGGATAAAATGGGTATGACCGTCAGCTCTGGTACGGTTGTCATCAAAAAGGACACCAGCAATCTCATCGGCATCAGCATCGGCGGTGGTGCACCGCTCTGTCCTTGTCTTTACATTGTTCAGGTATTTGATGGCACCCCGGCAGCCCGCGAAGGAACACTGCAAAGTGGCGATGAGCTGCTCGGCGTGAATGGTGTCTCTGTGAAGGGCAAAACGAAGGTTGAGGTTGCCAAAATGATACAGTCCGCCACGGAGGAGGTGATGATACACTACAACAAGCTACACGCCGACCCAACGCAGGG-AGAAACTCTGGACATTGTACTGAAAAAGATGAAGCATCGGCTGGTCGAAAGGATGTCGAGCAGCACGGCCGACACGCTGGGACTCTCGAGGGCAATCCTCTGCAACGACTCACTTGTAAAGCGCTTGCAAGAGCTTGAGCGAACGGAAACCATGTACAAGGGATT]
[+] EMBL BM635387 [CCGCGCATCAAAAGCAATCGATTCCAACAAGTCTGTTGTCTGATAGTTCGTAGAAAGATAGCATTTTACGCGTAACATTCAGTGGTGCCGAAGAATTATACTACTCCCACCATGTTGCAGGACTGCGACTATGACTACTTCTACGAGGAGGATAAAATGGGTATGACCGTCAGCTCTGGTACGGTTGTCATCAAAAAGGACACCAGCAATCTCATCGGCATCAGCATCGGCGGTGGTGCACCGCTCTGTCCTTGTCTTTACATTGTTCAGGTATTTGATGGCACCCCGGCAGCCCGCGAAGGAACACTGCAAAGTGGCGATGAGCTGCTCGGCGTGAATGGTGTCTCTGTGAAGGGCAAAACGAAGGTTGAGGTTGCCAAAATGATACAGTCCGCCACGGAGGAGGTGATGATACACTACAACAAGCTACACGCCGACCCAACGCAGGG AGAAACTCTGGACATTGTACTGAAAAAGATGAAGCATCGGCTGGTCGAAAGGATGTCGAGCAGCACGGCCGACACGCTGGGACTCTCGAGGGCAATCCTCTGCAACGACTCACTTGTAAAGCGCTTGCAAGAGCTTGAGCGAACGGAAACCATGTACAAGGGATT]
[+] EMBL BM651059 [ ccgGCATTTTACGCGTAACATTCAGTGGTGCCGAAGAATTATACTACTCCCAGCATGTTGCAGGACTGCGACTATGACTACTTCTACGAGGAGGATAAAATGGGCATGACCGTCAGCTCTGGTACGGTTGTCATCAAAAAGGACACCAGCAATCTCATCGGCATCAGCATCGGCGGTGGTGCACCGCTCTGTCCATGTCTTTACATTGTTCAGGTATTTGATGGCACCCCGGCAGCCCGCGAAGGAACACTGCAAAGTGGCGATGAGCTGCTCGGCGTGAATGGTGTCTCTGTGAAGGGCAAAACGAAGGTTGAAGTTGCCAAAATGATACAGcc ]
[+] EMBL BX618775 [ AAAATGATACAGTCCGCCACGGAGGAGGTGATGATACACTACAACAAGCTACACGCCGACCCAACGCAGGGCAGAAACTCTGGACATTGTACTGAAAAAGATGAAGCATCGGCTGGTCGAAAGGATGTCCAGTAGTACAGCCGACACACTGGGACTCTCGAGGGCAATCCTCTGCAACGACTCACTTGTAAAGCGCTTGCAACAGCTTGAACGAACGGAAAC ]
consensusID : consensus_5282#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[GCCCCAGGCATTAACACAGCCGACACGCTGGGACTCACTTGTAAAGCGTTTGCAAGAGCTTGAGCGAACGGAAACCATGTACAAGGGATTGGTGGATCACGCACGAAGGATGCTTAAGGCCCATTTCGATGTCCTTCAGACATACCAAGCGTTTGGAAACATTTTTGCTTCCATAAGTGTCCGGGAGCCGCAACCACGTGCATCGGAGGCGTTCCGTATCTTCGGTGAGCTGCACCGAACATGGAGAAGGACGGCATCAAGATGATCAAAACGTTGAAGCCAATCCTTGCCGACATGGGCACGTATCTGCACAAGGCCATCCCGGACACCAAGCTCACCGTGAAGCGGTACGCCGATGCAAAGTTCAGCTATCTGTCCTACTGTCTAAAGATCAAGGAGATGGACGACGAGGAGCATGGNATATGCCGAATACAGGAGCCACTGTACCGCGTTGAAACGGGCAATTACGAGTATCGGCTGATACTGCGCTGCGGCAGGAGGC]
[+] EMBL AL697599 [GCCCCAGGCATTAACACAGCCGACACGCTGGGACTCACTTGTAAAGCGTTTGCAAGAGCTTGAGCGAACGGAAACCATGTACAAGGGATTGGTGGATCACGCACGAAGGATGCTTAAGGCCCATTTCGATGTCCTTCAGACATACCAAGCGTTTGGAAACATTTTTGCTTCCATAAGTGTCCGGGAGCCGCAACCACGTGCATCGGAGGCGTTCCGTATCTTCGGTGAGCTGCACCGAACATGGAGAAGGACGGCATCAAGATGATCAAAACGTTGAAGCCAATCCTTGCCGACATGGGCACGTATCTGCACAAGGCCATCCCGGACACCAAGCTCACCGTGAAGCGGTACGCCGATGCAAAGTTCAGCTATCTGTCCTACTGTCTAAAGATCAAGGAGATGGACGACGAGGAGCATGGNATATGCCGAATACAGGAGCCACTGTACCGCGTTGAAACGGGCAATTACGAGTATCGGCTGATACTGCGCTGCGGCAGGAGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5282#0 CCGCGCATCAAAAGCAATCGATTCCAACAAGTCTGTTGTCTGATAGTTCGTAGAAAGATA 60
consensus_5282#1 ------------------------------------------------------------
consensus_5282#0 GCATTTTACGCGTAACATTCAGTGGTGCCGAAGAATTATACTACTCCCACCATGTTGCAG 120
consensus_5282#1 --------------------------GCCCCAGGCAT-TAACACAGCCGACACGCTG--G 31
*** ** * ** ** ** ** * ** *
consensus_5282#0 GACTGCGACTATGAC-TACTTCTACGAGGAGGATAAAATGGGTATGACCGTCAGCTCTGG 179
consensus_5282#1 GACT-CACTTGTAAAGCGTTTGCAAGAGCTTGAGCGAACGGA---AACCATGTACAAGGG 87
**** * * * * ** * *** ** ** ** *** * * **
consensus_5282#0 TACGGTTG-TCAT-CAAAAAGGACACCAGCAATCTCATCGGCATCAGCATCGGCGGTGGT 237
consensus_5282#1 ATTGGTGGATCACGCACGAAGGATGCTTA-AGGCCCATTTCGATGTCCTTCAGACATACC 146
*** * *** ** ***** * * * *** ** * ** * *
consensus_5282#0 GCACCGCTCTGTCCTTGTCTTTACATTGTTCAGGTATTTGATGGCACCCCGGCAGCCCGC 297
consensus_5282#1 AAGCG--TTTGGAAACATTTTTGC-TTCCATAAGTGTCCG--GGAGCCGCAACCACGTGC 201
* * ** * *** * ** * ** * * ** ** * * * **
consensus_5282#0 GAAGGAA-CACTGCAAAGTGGCGATGAGCTGCTCGGCGTGAATGGTGTCTCTGTGAAGGG 356
consensus_5282#1 ATCGGAGGCGTTCCGTATCTTCGGTGAGCTGCAC--CGAACATGGAG-----AAGGACGG 254
*** * * * * ** ******** * ** **** * * * **
consensus_5282#0 CAAAACGAAGGTTGAGGTTGCCAAAATGATACAGTCCGCCACGGAGGAGGTGATGATACA 416
consensus_5282#1 CATCAAGATGATCAAAACGTTGAAGCCAATCCTTGCCGACATGG-GCACGTATC--TGCA 311
** * ** * * * ** ** * *** ** ** * * ** * **
consensus_5282#0 CTACAACAAGCTACACGCCGA-CCCAACGCAGGGAGAAACTCTGGACATTGTACTGAAAA 475
consensus_5282#1 CAAGGCCATCCCGGACACCAAGCTCACCGTGAAGCGGTACGCCGA------TGCAAAGTT 365
* * ** * ** ** * * ** ** * * ** * * * * *
consensus_5282#0 AGATGAAGCATCGGCTGGTCGAAAGGATGTCGAGCAGCACGGCCGACACGCTGGGAC-TC 534
consensus_5282#1 CAGCTATCTGTCCTACTGTCTAAAGATCAAGGAGATGGACGACGAGGAGCATGGNATATG 425
* ** *** **** *** * *** * * *** * *
consensus_5282#0 TCGAGGGCA--ATCCTCTGCAACGACTCACTTGTAAAGCGCTTGCAAGAGCTTGAGCGAA 592
consensus_5282#1 CCGAATACAGGAGCCACTGTACCG----CGTTGAAACGGGCAATTACGAGTATCGGCTGA 481
*** ** * ** *** * ** *** ** * ** * *** * ** *
consensus_5282#0 CGGAAACCATGTACAAGGGATT 614
consensus_5282#1 TACTGCGCTGCGGCAGGAGGC- 502
* ** * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||