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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 982 fasta sequence
[CCGGGATGCTGCTAAAGGAAGGTGTGCGGCTGGGAGGCGCTCTAGGAAGCGAACGAACCAGCAGAGCTGTGTTAGAGCAGTGGCACTGCATTTATGTTTAGTAAAGAACCGGCCTGTAGAGGCAACTAAGGAAGCTTCTAACCGCTCGTCGCGCGTTGCCAGCCAGAAGAGCTAGGTTTCTTCATTGTACAAACTCACTTGTAATCCAGCGAAGCGGGTGAATTCAAGCAATGATTGTGAGTATCGTAGGG--AAAAGGGAAAGACGACCGTAGCTTCCCCGGTACAAAACTTGCCAACGGTGTAGGGAGGGGAGCGCCAATGTTTACACGTTTGTTTTTGTATGTTGAAATCCGTTGCTCCGTTTCCTGCCCACACAGACACACTCACACTGCTTTCGTGTGCAGAAGATGCACAGTTTCATCATCTTCTGTTAGTGATTGTAACA---TCTATATGTTTAATTTCGTACCTTTTGTTGGTGATCGATCGTGCGCCCTCTTTACCGCCCCGG--GGAATAGCCAGCTTCCCTTTTCCTGCTGTAGATGTATGTAAACGAAGGGCTATGCTTTTGATCTGTTTTTTTTTTTGCGTAAAAACACACGGCCTACTACTAATAACTACTGTGCCCGCAATAGT-AACAGTAGGATTTGCTTAGTTTGTGAGCTCCTTCCTGTACGCTTTTGAGCATCCGTTCCGGGCAAGGATCTTCCGCTTCTCTCCTACTTCAAAGTCATATAAACCATCATATTGCGTGCGAACGACAGGTCCGCATTGTGACAGGCTGCAGGGTCGTGTGAGCCCTTCTCGTGTGTAGCAAGTAAGCAGGTANGCTTAAGATTANGGTAGAAAGCTANGGAAATAAGTTTTAACGTAAACATTGNTAACTATC-AAAAAAGCGGGANGAGAAAA-GTAGCGAAACGCAAGGCAAAAGTAAACTGCACGGTTGAGTTAAAACACGAAAGAGTCAATAAACATTTTAAGGACC]
[+] EMBL BM589693 [CCGGGATGCTGCTAAAGGAAGGTGTGCGGCTGGGAGGCGCTCTAGGAAGCGAACGAACCAGCAGAGCTGTGTTAGAGCAGTGGCACTGCATTTATGTTTAGTAAAGAACCGGCCTGTAGAGGCAACTAAGGAAGCTTCTAACCGCTCGTCGCGCGTTGCCAGCCAGAAGAGCTAGGTTTCTTCATTGTACAAACTCACTTGTAATCCAGCGAAGCGGGTGAATTCAAGCAATGATTGTGAGTATCGTAGGG AAAAGGGAAAGACGACCGTAGCTTCCCCGGTACAAAACTTGCCAACGGTGTAGGGAGGGGAGCGCCAATGTTTACACGTTTGTTTTTGTATGTTGAAATCCGTTGCTCCGTTTCCTGCCCACACAGACACACTCACACTGCTTTCGTGTGCAGAAGATGCACAGTTTCATCATCTTCTGTTAGTGATTGTAACA TCTATATGTTTAATTTCGTACCTTTTGTTGGTGATCGATCGTGCGCCCTCTTTACCGCCCCGG GGAATAGCCAGCTTCCCTTTTCCTGCTGTAGATGTATGTAAACGAAGGGCTATGCTTTTGATCTGTTTTTTTTTTTGCGTAAAAACACACGGCCTACTACTAATAACTACTGTGCCCGCAATAGTAAACAGTAGGATTTGCTTAGTTTGTGAGCTCCTTCCTGTACGCTTTTGAG ]
[+] EMBL BX623628 [ TTTAGTAAGGAACCGGGCTGTAGAGGCAACTAGGGAAGCTTCTAACCACTCGCCGCGCGTTGCCAGCCAGAAGAGCTAGGTTTCTTCATTGTACAAACTCACTTGTAATCCAGCGCAGCGGGTGAATTCAAGCAATGATTGTGAGTATCGTAGGGGAAAAAGGGAAGGTCGACCGCAGCTTCTCCGGTACAAAACTTGCCAACGGTGTAGGGAGAGGAGCGCCAATGTTTACACGTTTGTTTTTGTATGTCGAAATCCGTTGCTCCGTTTCCTGCCCACAC ACACACTCACACCGCTTTCTGGTGCAGAAGATGCACAGACTCATCATCTTCTGTTAGTGATTGTAACATTTTTTTTAGGTTTAATTTCGTAACTTTTGTTGGTGATCGATCGTGCGCCCTCTTTACCGCCCCGGGTGGAATGGCCAGCTTTCCTTTTCCTGCTGTAGCTGTATGTAAACGAAGGGCTATGCTTTTGATCTG TTTTTTGCGTAACAACACACGGCCTACTACTAATAACTACTGTGCCCGCAATAGT AACAGTAGGATTTGCTTAGTTTGTGAGATCCTTCCTGTACGCTTTTGAGCATCCGTTCCGGGCAAGGATCTTCCGCTTCTCTCCTACTTCAAAGTCATATAAACCATCATATTGCGTGCGAACGACAGGTCCGCATTGTGACAGGCTGCAGGGTCGTGTGAGCCCTTCTCGTGTGTAGCAAGTAAGCAGGTANGCTTAAGATTANGGTAGAAAGCTANGGAAATAAGTTTTAACGTAAACATTGNTAACTATC AAAAAAGCGGGANGAGAAAA GTAGCGAAA ]
[+] EMBL BM626112 [ ccgCGCAATAGT AACAGTAGGA TTGCTTCGTTTGTGAGCTCCTTCCTGTACGCTTTTGAGCATCCGTTCCGGGCAAGGATTTTCCGCTGCTCTCCTACTTCAAAGTCATATAAACCATC ATTGCGTGCGGACGACAGGTCCGCATTGTAACAGGCTGCAGGGTCGTGTGAGCCCTTCTCGTGTGTAGCAAGTAAGCAGGTAGGCTTAAGATTAGGGTAGAAAGCTA GGGAATAAGTTTTAACGTAAACATTGTTAACTATCAAAAAAAGCGGAAGGAGAAAAGGTAGCGAAACGCAAGGCAAAAGTAAACTGCACGGTTGAGTTAAAACACGAAAGAGTCAATAAACATTTTAAGGACC]
consensusID : consensus_5285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[CAGAATTCCGAGGTTACTAGGAAGCTTCTAACGCTCGTCGCGCGTTGCAGCCAGAAGAGCTAGGTTTCTTCATTGTACAAACTCACTTGTAATCCAGCGAAGCGGGTGAATTCAAGCAATGATTGTGAGTATCGTAGGGAAAAGGGAAAGACGACGTAGCTTCCCCGGTACAAAATTGCAACGGTGTAGGAGGGGAGCGCCATGTTTACACGTTGTGTATGTTGAAATCCGTTGCTCCGTTTCCTGCCCAACAGAAACTCACACTGGCTTTCGGTGTGCAGAAGATGCCACAGTTTCATCATTCTTCTGTTAGTGATTGTAACATCTATATTGTTTTAATTTCGTACCTTTATGTCGGTGATCGGATCGGTGCGCCCTCTTTACGCCCCGGGGGAATAGGCCAGATTTCCCCTTTTCCTGCTGTCGATGTATGTAAACGAAGGGCTATGCCTNTTGATCTCANACATATATGGTACAAAACACACGGCGCTTACTAANTAATAAATAGCTGTGCCCGCCTAGTAACCACGGNAAGATTGNTCTATCTTGTCGAGCTCCCTTCCTGTTACGCATTTGAGCATCCCTCCNGGCCAAGATTTCCCGCTGCTCNNCTAACTTTCAAGTCACTNATCAACCATCCAATTGCGTNCTCGNAGACNGTCCCCACTATGTACACAGGCNC]
[+] EMBL AL929810 [CAGAATTCCGAGGTTACTAGGAAGCTTCTAACGCTCGTCGCGCGTTGCAGCCAGAAGAGCTAGGTTTCTTCATTGTACAAACTCACTTGTAATCCAGCGAAGCGGGTGAATTCAAGCAATGATTGTGAGTATCGTAGGGAAAAGGGAAAGACGACGTAGCTTCCCCGGTACAAAATTGCAACGGTGTAGGAGGGGAGCGCCATGTTTACACGTTGTGTATGTTGAAATCCGTTGCTCCGTTTCCTGCCCAACAGAAACTCACACTGGCTTTCGGTGTGCAGAAGATGCCACAGTTTCATCATTCTTCTGTTAGTGATTGTAACATCTATATTGTTTTAATTTCGTACCTTTATGTCGGTGATCGGATCGGTGCGCCCTCTTTACGCCCCGGGGGAATAGGCCAGATTTCCCCTTTTCCTGCTGTCGATGTATGTAAACGAAGGGCTATGCCTNTTGATCTCANACATATATGGTACAAAACACACGGCGCTTACTAANTAATAAATAGCTGTGCCCGCCTAGTAACCACGGNAAGATTGNTCTATCTTGTCGAGCTCCCTTCCTGTTACGCATTTGAGCATCCCTCCNGGCCAAGATTTCCCGCTGCTCNNCTAACTTTCAAGTCACTNATCAACCATCCAATTGCGTNCTCGNAGACNGTCCCCACTATGTACACAGGCNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5285#0 CCGGGATGCTGCTAAAGGAAGGTGTGCGGCTGGGAGGCGCTCTAGGAAGCGAACGAACCA 60
consensus_5285#1 ------------------------------------------------------------
consensus_5285#0 GCAGAGCTGTGTTAGAGCAGTGGCACTGCATTTATGTTTAGTAAAGAACCGGCCTGTAGA 120
consensus_5285#1 -------------------------------------------------CAGAATTCCGA 11
* * * **
consensus_5285#0 GGCAACTAAGGAAGCTTCTAACCGCTCGTCGCGCGTTGCCAGCCAGAAGAGCTAGGTTTC 180
consensus_5285#1 GGTTACTA-GGAAGCTTCTAAC-GCTCGTCGCGCGTTGC-AGCCAGAAGAGCTAGGTTTC 68
** **** ************* **************** ********************
consensus_5285#0 TTCATTGTACAAACTCACTTGTAATCCAGCGAAGCGGGTGAATTCAAGCAATGATTGTGA 240
consensus_5285#1 TTCATTGTACAAACTCACTTGTAATCCAGCGAAGCGGGTGAATTCAAGCAATGATTGTGA 128
************************************************************
consensus_5285#0 GTATCGTAGGGAAAAGGGAAAGACGACCGTAGCTTCCCCGGTACAAAACTTGCCAACGGT 300
consensus_5285#1 GTATCGTAGGGAAAAGGGAAAGACGAC-GTAGCTTCCCCGGTACAAAATT--GCAACGGT 185
*************************** ******************** * *******
consensus_5285#0 GTAGGGAGGGGAGCGCCAATGTTTACACGTTTGTTTTTGTATGTTGAAATCCGTTGCTCC 360
consensus_5285#1 GTAGG-AGGGGAGCGCCA-TGTTTACACGTTG-----TGTATGTTGAAATCCGTTGCTCC 238
***** ************ ************ ***********************
consensus_5285#0 GTTTCCTGCCCACACAGACACACTCACACTGCTTTCGTGTGCAGAAGATGC-ACAGTTTC 419
consensus_5285#1 GTTTCCTGCCCA-ACAGAAACTCACACTGGCTTTCGGTGTGCAGAAGATGCCACAGTTTC 297
************ ***** ** * *** ** *************** ********
consensus_5285#0 ATCAT-CTTCTGTTAGTGATTGTAACATCTATATG--TTTAATTTCGTACCTTT-TGTTG 475
consensus_5285#1 ATCATTCTTCTGTTAGTGATTGTAACATCTATATTGTTTTAATTTCGTACCTTTATGTCG 357
***** **************************** ***************** *** *
consensus_5285#0 GTGATCG-ATCG-TGCGCCCTCTTTACCGCCCCGGGGAATAG-CCAGCTT--CCCTTTTC 530
consensus_5285#1 GTGATCGGATCGGTGCGCCCTCTTTACGCCCCGGGGGAATAGGCCAGATTTCCCCTTTTC 417
******* **** ************** *** ********* **** ** ********
consensus_5285#0 CTGCTGTAGATGTATGTAAACGAAGGGCTATGC-TTTTGATCTGTTTTTTTTTTTGCGTA 589
consensus_5285#1 CTGCTGTCGATGTATGTAAACGAAGGGCTATGCCTNTTGATCTCANACATATATGGTACA 477
******* ************************* * ******* * * * * *
consensus_5285#0 AAA-ACACACGGCCTACTA-CTAATAACTA-CTGTGCCCGC--AATAGTAACAGTAGGAT 644
consensus_5285#1 AAACACACGGCGCTTACTAANTAATAAATAGCTGTGCCCGCCTAGTAACCACGGNAAGAT 537
*** **** ** ***** ****** ** ********** * ** ** * * ***
consensus_5285#0 TTGCTTAGTTTGT-GAGCTCC-TTCCTGT-ACGCTTTTGAGCATCCGTTCCGGGCAAGGA 701
consensus_5285#1 TGNTCTATCTTGTCGAGCTCCCTTCCTGTTACGCATTTGAGCATCC-CTCCNGGCCAAGA 596
* ** **** ******* ******* **** *********** *** *** * **
consensus_5285#0 TCTTCCGCTTCTCTCCTA-CTTCAAAGTCA--TATAAACCATCATATTGCGTGCGAACGA 758
consensus_5285#1 TTTCCCGCTGCTCNNCTAACTTTCAAGTCACTNATCAACCATCCAATTGCGTNCTCGNAG 656
* * ***** *** *** *** ****** ** ******* ******* *
consensus_5285#0 CAGGTCCGCATTGTG---ACAGGCTGCAGGGTCGTGTGAGCCCTTCTCGTGTGTAGCAAG 815
consensus_5285#1 ACNGTCCCCACTATGTACACAGGCNC---------------------------------- 682
**** ** * ** ******
consensus_5285#0 TAAGCAGGTANGCTTAAGATTANGGTAGAAAGCTANGGAAATAAGTTTTAACGTAAACAT 875
consensus_5285#1 ------------------------------------------------------------
consensus_5285#0 TGNTAACTATCAAAAAAGCGGGANGAGAAAAGTAGCGAAACGCAAGGCAAAAGTAAACTG 935
consensus_5285#1 ------------------------------------------------------------
consensus_5285#0 CACGGTTGAGTTAAAACACGAAAGAGTCAATAAACATTTTAAGGACC 982
consensus_5285#1 -----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||