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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5286#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence
[AGAATCCCCCGAGGTTTAATCTGCCATCTTCATCACCCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTACGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATACCCCGTGCCGTGCTTGCTATATCGACAAAAACCAACAAAGTCAGCTGGGAGTTTTCCTTCGCTACGCGTGCTAATTGCGATTACCGTGCCAAAGGCAAGGATCGGACANGGTGAAGAAGCTATGTAGGCTGCGGCACAATCGCTNTACGTACCTGATCGTATATCAATCTACCACTCCAACTCGCATATTGCNCCAGACGCCTTACAGGACACGGTTCCATACGTGGTGAGACACGGTGGGAAACCGAATTTGNCTTTTTGTTAAATCCCGTGCTCGGCTATACGTGTACCCCTACCCCCCAACGTACGGGATCTGGATGCGCCTTCTACTGTATATCACAGATACTCTNTGCGCTTGCCACTCTNTNTCCTCCGCGTACGGNCNNGCTTCCGGAAACANGTTCANATTGACTGNTCCCCATCCCACCGGGGACCGCGAGTCCGAAAACACGGAAGCGAAATNCCCGGTCGCTATCATTGCGAAAAAGAGTGTNTCGTCGTAGCCGCCTTCTGCCAACGCGTTACCAGATCAGCTCCCCCCGACATATCGCATCATCGTCCCCGGCTGTAAGGGTG]
[+] EMBL AL929841 [AGAATCCCCCGAGGTTTAATCTGCCATCTTCATCACCCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTACGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATACCCCGTGCCGTGCTTGCTATATCGACAAAAACCAACAAAGTCAGCTGGGAGTTTTCCTTCGCTACGCGTGCTAATTGCGATTACCGTGCCAAAGGCAAGGATCGGACANGGTGAAGAAGCTATGTAGGCTGCGGCACAATCGCTNTACGTACCTGATCGTATATCAATCTACCACTCCAACTCGCATATTGCNCCAGACGCCTTACAGGACACGGTTCCATACGTGGTGAGACACGGTGGGAAACCGAATTTGNCTTTTTGTTAAATCCCGTGCTCGGCTATACGTGTACCCCTACCCCCCAACGTACGGGATCTGGATGCGCCTTCTACTGTATATCACAGATACTCTNTGCGCTTGCCACTCTNTNTCCTCCGCGTACGGNCNNGCTTCCGGAAACANGTTCANATTGACTGNTCCCCATCCCACCGGGGACCGCGAGTCCGAAAACACGGAAGCGAAATNCCCGGTCGCTATCATTGCGAAAAAGAGTGTNTCGTCGTAGCCGCCTTCTGCCAACGCGTTACCAGATCAGCTCCCCCCGACATATCGCATCATCGTCCCCGGCTGTAAGGGTG]
consensusID : consensus_5286#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[CCGCGTAAATTCTGTTCCAACACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTTGACTGATAAATCTGCCATCTTCATCACCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTCGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATCCCCGTGCCGTGCTTGCTTATCGACAAAAACCAACAAGTCAGCTGGGAGTTTCCTTCGCTCGCGTGCTAATTGCGATTACCGTGCAAGCAAGATCGAAGGTGAAGAAGCTTGTGGCTGCGGAAATCGCTTCGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCATTTGCCCAGCGCCTTACAGGACACGGTTCCATCGTGGTGAGACACGGTGGGAAAAGAATTGCCTTTGTAATCCCGTGCTGGCTATACGTGTACCCCTCCCCCACCGTACGGATCTGGATGCGCCTTTCTGTTTTCGATTATTGCGTTGCATCTTTTAGGTCGTTTGTTCGGAACAAGTTTTGACTGCTCCCATCCACGGGCCGGGTCGAAACACGCAAGCGAATCCGTCGCTTTTTGCGAAAAAAAGTGTTTTGTGTGCCGCTTCTGCCAAGCGTTACAGATCAGCCTCC]
[+] EMBL BM608768 [CCGCGTAAATTCTGTTCCAACACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTTGACTGATAAATCTGCCATCTTCATCACCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTCGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATCCCCGTGCCGTGCTTGCTTATCGACAAAAACCAACAAGTCAGCTGGGAGTTTCCTTCGCTCGCGTGCTAATTGCGATTACCGTGCAAGCAAGATCGAAGGTGAAGAAGCTTGTGGCTGCGGAAATCGCTTCGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCATTTGCCCAGCGCCTTACAGGACACGGTTCCATCGTGGTGAGACACGGTGGGAAAAGAATTGCCTTTGTAATCCCGTGCTGGCTATACGTGTACCCCTCCCCCACCGTACGGATCTGGATGCGCCTTTCTGTTTTCGATTATTGCGTTGCATCTTTTAGGTCGTTTGTTCGGAACAAGTTTTGACTGCTCCCATCCACGGGCCGGGTCGAAACACGCAAGCGAATCCGTCGCTTTTTGCGAAAAAAAGTGTTTTGTGTGCCGCTTCTGCCAAGCGTTACAGATCAGCCTCC]
consensusID : consensus_5286#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 671 fasta sequence
[CCGCGGACGCGTGGGCACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTTGACTGATAAATCTGCCATCTTCATCACCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTCGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATCCCCGTGCCGTGCCTGCTTATCGACAAAAACCAACAAGTCAGCTGGGAGTTTCCTTCGCTCGCGTGCTAATTGCGATTGCCGTGCAAGCAAGATCGAAGGTGAAGAAGCTTGTGGCTGCGGAAATCGCTTCGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCATTTGCCCAGCGCCTTACAGGACACGGATCCATCGTGGTGAGACACGGTGGGAAAAGAATTGCCTTTGTAATCCCGTGCTGGCTATACGTGTACCCCTCCCCCACCGTACGGATCTGGATGCGCCTTTCTGTTTTCGATTATTGCGTTGCATCTTTTAGGTCGTTTGTTCGGAACAAGTTTTGACTGCTGCCATCCGCGGGCCGGGTCGAAACACGGAAGCGAATCCGTCGCTTTTTGCGAAAAGAGTGTTTTGTGTGCCGCTTCTGCCAAGCGTTGCAGATCAGCC]
[+] EMBL BM591060 [CCGCGGACGCGTGGGCACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTTGACTGATAAATCTGCCATCTTCATCACCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTCGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATCCCCGTGCCGTGCCTGCTTATCGACAAAAACCAACAAGTCAGCTGGGAGTTTCCTTCGCTCGCGTGCTAATTGCGATTGCCGTGCAAGCAAGATCGAAGGTGAAGAAGCTTGTGGCTGCGGAAATCGCTTCGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCATTTGCCCAGCGCCTTACAGGACACGGATCCATCGTGGTGAGACACGGTGGGAAAAGAATTGCCTTTGTAATCCCGTGCTGGCTATACGTGTACCCCTCCCCCACCGTACGGATCTGGATGCGCCTTTCTGTTTTCGATTATTGCGTTGCATCTTTTAGGTCGTTTGTTCGGAACAAGTTTTGACTGCTGCCATCCGCGGGCCGGGTCGAAACACGGAAGCGAATCCGTCGCTTTTTGCGAAAAGAGTGTTTTGTGTGCCGCTTCTGCCAAGCGTTGCAGATCAGCC]
[+] EMBL BX602739 [ AAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTCGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATCCCCGTGCCGTGCCTGCTTATCGACAAAAACCAACAAGTCAGCTGGGAGTTTCCTTCGCTCGCGTGCTAATTGCGATTGCCGTGCAAGCAAGATCGAAGGTGAAGAAGCTTGTGGCTGCGGAAATCGCTTCGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCATTTGCCCAGCGCCTTACAGGACACGGTTCCATCGTGGTGAGAGACGGTGGGAAAAGAATTGCCTTTGTAATCCCGTGCTGGCTATACGTGTACCCCTCCCCCACCGTACGGATCTGGATGCGCCTTTCTGTTTTCGATTATTGCGTTGCATCTTTTAGGTCGTTTGTTCGGAACAAGTTTTGACTGCTCCCATCCGCGGGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5286#1 CCGCGTAAATTCTGTTCCAACACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTT 60
consensus_5286#2 CCGCGGA-----CGCGTGGGCACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTT 55
consensus_5286#0 --------------------------------------------------AGAATCCCCC 10
*
consensus_5286#1 GACTGATAAATCTGCCATCTTCATCACC-AAATACATTCTGCTCCCTTGAAACGCCGCGC 119
consensus_5286#2 GACTGATAAATCTGCCATCTTCATCACC-AAATACATTCTGCTCCCTTGAAACGCCGCGC 114
consensus_5286#0 GAG-GTTTAATCTGCCATCTTCATCACCCAAATACATTCTGCTCCCTTGAAACGCCGCGC 69
** * * ******************** *******************************
consensus_5286#1 AAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGT-CGGTCGGCTGCT 178
consensus_5286#2 AAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGT-CGGTCGGCTGCT 173
consensus_5286#0 AAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTACGGTCGGCTGCT 129
*********************************************** ************
consensus_5286#1 CGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACAT-CCCCGTGCCGTGCTTG 237
consensus_5286#2 CGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACAT-CCCCGTGCCGTGCCTG 232
consensus_5286#0 CGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATACCCCGTGCCGTGCTTG 189
******************************************* ************* **
consensus_5286#1 CT-TATCGACAAAAACCAACAA-GTCAGCTGGGAGTTT-CCTTCGCT-CGCGTGCTAATT 293
consensus_5286#2 CT-TATCGACAAAAACCAACAA-GTCAGCTGGGAGTTT-CCTTCGCT-CGCGTGCTAATT 288
consensus_5286#0 CTATATCGACAAAAACCAACAAAGTCAGCTGGGAGTTTTCCTTCGCTACGCGTGCTAATT 249
** ******************* *************** ******** ************
consensus_5286#1 GCGATTACCGTGC---AAGCAAG-ATCG---AAGGTGAAGAAGCT-TGT-GGCTGCGGAA 344
consensus_5286#2 GCGATTGCCGTGC---AAGCAAG-ATCG---AAGGTGAAGAAGCT-TGT-GGCTGCGGAA 339
consensus_5286#0 GCGATTACCGTGCCAAAGGCAAGGATCGGACANGGTGAAGAAGCTATGTAGGCTGCGGCA 309
****** ****** * ***** **** * ************ *** ******** *
consensus_5286#1 --ATCGCTT--CGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCAT-TTGCCC-- 397
consensus_5286#2 --ATCGCTT--CGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCAT-TTGCCC-- 392
consensus_5286#0 CAATCGCTNTACGTACCTGATCGTATATCAATCTACCACTCCAACTCGCATATTGCNCCA 369
****** *********************** * ***** ******* **** *
consensus_5286#1 AGCGCCTTACAGGACACGGTTCCAT-CGTGGTGAGACACGGTGGGAAA--AGAATTGCCT 454
consensus_5286#2 AGCGCCTTACAGGACACGGATCCAT-CGTGGTGAGACACGGTGGGAAA--AGAATTGCCT 449
consensus_5286#0 GACGCCTTACAGGACACGGTTCCATACGTGGTGAGACACGGTGGGAAACCGAATTTGNCT 429
***************** ***** ********************** * *** **
consensus_5286#1 TTGT----AATCCCGTGCT-GGCTATACGTGTACCCCT--CCCCCACCGTACGG-ATCTG 506
consensus_5286#2 TTGT----AATCCCGTGCT-GGCTATACGTGTACCCCT--CCCCCACCGTACGG-ATCTG 501
consensus_5286#0 TTTTGTTAAATCCCGTGCTCGGCTATACGTGTACCCCTACCCCCCAACGTACGGGATCTG 489
** * *********** ****************** ****** ******* *****
consensus_5286#1 GATGCGCCTTT------------------CTGTTTTCGATTATTGCGTTGCATCTTTTA- 547
consensus_5286#2 GATGCGCCTTT------------------CTGTTTTCGATTATTGCGTTGCATCTTTTA- 542
consensus_5286#0 GATGCGCCTTCTACTGTATATCACAGATACTCTNTGCGCTTGCCACTCTNTNTCCTCCGC 549
********** ** * * ** ** * * ** *
consensus_5286#1 ----GGTCGTTTGTTCGGAA-CAAGTT----TTGACTGCTCCC-ATCC----ACGGGCCG 593
consensus_5286#2 ----GGTCGTTTGTTCGGAA-CAAGTT----TTGACTGCTGCC-ATCC----GCGGGCCG 588
consensus_5286#0 GTACGGNCNNGCTTCCGGAAACANGTTCANATTGACTGNTCCCCATCCCACCGGGGACCG 609
** * * ***** ** *** ******* * ** **** ** ***
consensus_5286#1 --GGTC--GAAACACGCAAGCGAATCC----GTCGCTTT--TTGCGAAAAAAAGTGTTTT 643
consensus_5286#2 --GGTC--GAAACACGGAAGCGAATCC----GTCGCTTT--TTGCGAAAAGA-GTGTTTT 637
consensus_5286#0 CGAGTCCGAAAACACGGAAGCGAAATNCCCGGTCGCTATCATTGCGAAAAAGAGTGTNTC 669
*** ******* ******* ****** * ********* **** *
consensus_5286#1 GT-GT-GCCGC-TTCTGCCAA-GCGTTAC-AGATCAGCCTCC------------------ 680
consensus_5286#2 GT-GT-GCCGC-TTCTGCCAA-GCGTTGC-AGATCAGCC--------------------- 671
consensus_5286#0 GTCGTAGCCGCCTTCTGCCAACGCGTTACCAGATCAGCTCCCCCCGACATATCGCATCAT 729
** ** ***** ********* ***** * ********
consensus_5286#1 --------------------
consensus_5286#2 --------------------
consensus_5286#0 CGTCCCCGGCTGTAAGGGTG 749
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||