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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 814 fasta sequence
[CAAGAATCGCCACGAGGTGTAGTGGTAAAAGTAGCGCAAAGNTGGTGTAGTTGAGCTTTTTTACTTAAAAAAGGACATCATCAAACCTTCCCCGATGGATATTAGCTGTCAGGACATCATCGGGGACATTGAAGATTTAATATCATTGGACGACCCGTCGCCGGCAGAACGATACCTCAACAAGAAGGATGTAACTGTGCGCACCAAACGCGTCAAAGTACGCGCGAACCGGCCGAAAGAAACGTCCACCGTCGAAAAGCCGCTCCTGGACAGCGTTATTCCCGAGACGCAGCACATCTACATGAAGACATGGGGCTGTTGCGCATAACACCGTCTGACACGGAAGGTACAATGGCGGGTCAGCTGGCACAGATACGGGGTACAANTCTAACGAGCCGATAAAAGATTCGGGCGACCCTGTAGGGTGCTGAACAGTTGTACGGTCAAAAACCCGTCGGAAGATACGTTTCGTAACGAAATTGAGGCGGCCCATCAAGCCGGAAAGCATGTGGTGGTAGCCGGATGTGTGCCGCAGGCCGCCCCGCGGTCCGATTATCTCAAAGGGCTCAGCGTGGTCGGCGTGCAGCAGATCGATCGTGTGGCGGAAGTCGTGGAGGAAACGCTGAAGGGCCACTCGGTCCGGTTGCTGCAGGCGAAGAAGGTGGACGGTCGCAAGGTAGCCGGCCCAAAGCTGGCCCTGCCGAAGGTGCGCAAAAATCCGCTCATCGAGGTGATTCCCATCAATTCCGGCTGTCTGAACGCGTGCACCTACTGCAAGACAAAGTTTGCCCGGGCCGATCTGGTAAGCTACCCG]
[+] EMBL BX469193 [CAAGAATCGCCACGAGGTGTAGTGGTAAAAGTAGCGCAAAGNTGGTGTAGTTGAGCTTTTTTACTTAAAAAAGGACATCATCAAACCTTCCCCGATGGATATTAGCTGTCAGGACATCATCGGGGACATTGAAGATTTAATATCATTGGACGACCCGTCGCCGGCAGAACGATACCTCAACAAGAAGGATGTAACTGTGCGCACCAAACGCGTCAAAGTACGCGCGAACCGGCCGAAAGAAACGTCCACCGTCGAAAAGCCGCTCCTGGACAGCGTTATTCCCGAGACGCAGCACATCTACATGAAGACATGGGGCTGTTGCGCATAACACCGTCTGACACGGAAGGTACAATGGCGGGTCAGCTGGCACAGATACGGGGTACAANTCTAACGAGCCGATAAAAGATTCGGGCGACCCTGTAGGGTG ]
[+] EMBL BX607696 [ TCAAACCTTCCCCGATGGATATTAGCTGTCAGGACATCATCGGGGACATTGAAGATTTAATATCATTGGACGACCCGTCGCCGGCAGAACGATACCTCAACAAGAAGGATGTAACTGTGCGCACCAAACGCGTCAAAGTACGCGCGAACCGGCCGAAAGAAACGTCCACCGTCGAAAAGCCGCTCCTGGACAGCGTTATTCCCGAGACGCAGCACATCTACATGAAGACATGGGGCTG TGCGCATAACACC TCTGACACGGA GTAC ATGGCGGGTCAGCTGGCACAG TAC GGGTACAA TCTAACGAG CGAT AAAGATTCGGCCGA CCTGT GGGTGCTGAACAGTTGTACGGTCAAAAACCCGTCGGAAGATACGTTTCGTAACGAAATTGAGGCGGCCCATCAAGCCGGAAAGCATGTGGTGGTAGCCGGATGTGTGCCGCAGGCCGCCCCGCGGTCCGATTATCTCAAAGGGCTCAGCGTGGTCGGCGTGCAGCAGATCGATCGTGTGGCGGAAGTCGTGGAGGAAACGCTGAAGGGCCACTCGGTCCGGTTGCTGCAGGCGAAGAAGGTGGACGGTCGCAAGGTAGCCGGCCCAAAGCTGGCCCTGCCGAAGGTGCGCAAAAATCCGCTCATCGAGGTGATTCCCATCAATTCCGGCTGTCTGAACGCGTGCACCTACTGCAAGACAAAGTTTGCCCGGGCCGATCTGGTAAGCTACCCG]
consensusID : consensus_5304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[CCGCCCACGCGTCCGGCGTGCACCTACTGCAAGACAAAGTTTGCCCGGGCCGATCTGGTAAGCTACCCGGTGCAGGAGATAGTGGACCGGGCGCAGCAGGTATTTCAGGACGGGGTGTGCGAAATATGGCTCACGTCCGAAGACACCGGAACGTACGGGCGGGATATCGGTTCGTCGCTGCCGGAACTGCTGTGGCAGCTGGTTGAGGTAATCCCGGAAGGATGCATGATGCGGCTCGGCATGACCAATCCGCCCTACATTCTCGAGCACTTGGACGAGATGGCGAAAATACTGTCGCATCCACGCGTCTACAGCTTCCTGCACATACCGGTGCAGAGCGGCTCGGACGCAATCCTGGGCGAAATGAGGCGCGAATACTGCGTGAAGGATTTCGAGCGCATGGTGGACTTTCTACGCGCCCAAGTACCGGGCATTACGATCGCGACCGACATCATCTGCGGGTTCCCGGGCGAAACGGAAGCGGACTTTGACGACACGCTGGCACTGTGTGAGAAGTACCAGTTCCCAAGCCTGTTCATTAATCAGTTTTTCCCCCGGCCTGGTACGCCGGCAGCGAAGATGACGAAGGTTCCGGCCAATGAGGTGAAAACGCGCACGAAACGGTTGACCGATTTGTTCCATTCGTATGAGCCGTACAAAAAGTACGAAGCCGGTACCAAGCAAACCG]
[+] EMBL BM646628 [CCGCCCACGCGTCCGGCGTGCACCTACTGCAAGACAAAGTTTGCCCGGGCCGATCTGGTAAGCTACCCGGTGCAGGAGATAGTGGACCGGGCGCAGCAGGTATTTCAGGACGGGGTGTGCGAAATATGGCTCACGTCCGAAGACACCGGAACGTACGGGCGGGATATCGGTTCGTCGCTGCCGGAACTGCTGTGGCAGCTGGTTGAGGTAATCCCGGAAGGATGCATGATGCGGCTCGGCATGACCAATCCGCCCTACATTCTCGAGCACTTGGACGAGATGGCGAAAATACTGTCGCATCCACGCGTCTACAGCTTCCTGCACATACCGGTGCAGAGCGGCTCGGACGCAATCCTGGGCGAAATGAGGCGCGAATACTGCGTGAAGGATTTCGAGCGCATGGTGGACTTTCTACGCGCCCAAGTACCGGGCATTACGATCGCGACCGACATCATCTGCGGGTTCCCGGGCGAAACGGAAGCGGACTTTGACGACACGCTGGCACTGTGTGAGAAGTACCAGTTCCCAAGCCTGTTCATTAATCAGTTTTTCCCCCGGCCTGGTACGCCGGCAGCGAAGATGACGAAGGTTCCGGCCAATGAGGTGAAAACGCGCACGAAACGGTTGACCGATTTGTTCCATTCGTATGAGCCGTACAAAAAGTACGAAGCCGGTACCAAGCAAACCG]
consensusID : consensus_5304#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence
[AGATCGCCCGAGGTTCGCACAAACGCGTCAAGTACGCGCGAACCGGCCGAAAGAAACGTCCACCGTCGAAAAGCCGCTCCTGGACAGCGTTATTCCCGAGACGCAGCACATCTACATGAAGACATGGGGCTGTGCGCATAACACCTCTGACACGGAGTACATGGCGGGTCAGCTGGCACAGTACGGGTACAATCTAACGAGCGATAAAGATTCGGCCGACCTGTGGGTGCTGAACAGTTGTACGGTCAAAAACCCGTCGGAAGATACGTTTCGTAACGAAATTGAGGCGGCCCATCAAGCCGGAAAGCATGTGGTGGTAGCCGGATGTGTGCCGCAGGCCGCCCCGCGGTCCGATTATCTCAAAGGGCTCAGCGTGGTCGGCGTGCAGCAGATCGATCGTGTGGCGGAAGTCGTGGAGGAAACGCTGAAGGGCCACTCGGTCCGGTTGCTGCAGGCGANCNAANGTGGACGGTCGCAAGGTAGCCGGCCAAAGCTGGCCCTGCCGAAGGTGCGCAAAAATCCGCTCATCGAGGTGATTCCCATCAATTCCGGCTGTCTGAACGCGTGCAC]
[+] EMBL AL930139 [AGATCGCCCGAGGTTCGCACAAACGCGTCAAGTACGCGCGAACCGGCCGAAAGAAACGTCCACCGTCGAAAAGCCGCTCCTGGACAGCGTTATTCCCGAGACGCAGCACATCTACATGAAGACATGGGGCTGTGCGCATAACACCTCTGACACGGAGTACATGGCGGGTCAGCTGGCACAGTACGGGTACAATCTAACGAGCGATAAAGATTCGGCCGACCTGTGGGTGCTGAACAGTTGTACGGTCAAAAACCCGTCGGAAGATACGTTTCGTAACGAAATTGAGGCGGCCCATCAAGCCGGAAAGCATGTGGTGGTAGCCGGATGTGTGCCGCAGGCCGCCCCGCGGTCCGATTATCTCAAAGGGCTCAGCGTGGTCGGCGTGCAGCAGATCGATCGTGTGGCGGAAGTCGTGGAGGAAACGCTGAAGGGCCACTCGGTCCGGTTGCTGCAGGCGANCNAANGTGGACGGTCGCAAGGTAGCCGGCCAAAGCTGGCCCTGCCGAAGGTGCGCAAAAATCCGCTCATCGAGGTGATTCCCATCAATTCCGGCTGTCTGAACGCGTGCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5304#0 CAAGAATCGCCACGAGGTGTAGTGGTAAAAGTAGCGCAAAGNTGGTGTAGTTGAGCTTTT 60
consensus_5304#2 ------------------------------------------------------------
consensus_5304#1 ------------------------------------------------------------
consensus_5304#0 TTACTTAAAAAAGGACATCATCAAACCTTCCCCGATGGATATTAGCTGTCAGGACATCAT 120
consensus_5304#2 ------------------------------------------------------------
consensus_5304#1 ----------------------CCGCCCACGCGTCCGGCGTGCACCTACTGCAAGACAAA 38
consensus_5304#0 CGGGGACATTGAAGATTTAATATCATTGGACGACCCGTCGCCGGCAGAACGATACCTCAA 180
consensus_5304#2 ------------------------------------------------------------
consensus_5304#1 GTTTGCCCGGGCCGATCTGGTAAGCTACCCGGTGCAGGAGATAGTGGACCGGG--CGCAG 96
consensus_5304#0 CAAGAAGGATGTAACTGTGCGCACCAAACGCGTCAAAGTACGCGCGAACCGGCCGAAAGA 240
consensus_5304#2 --AGATCGCCCGAG--GTTCGCAC-AAACGCGTCAA-GTACGCGCGAACCGGCCGAAAGA 54
consensus_5304#1 CAGGTATTTCAGGACGGGGTGTGCGAAATATGGCTC---ACGTCCGAAGACACCGGAACG 153
* * * * *** * * *** **** *** **
consensus_5304#0 AACGTCCAC--CGTCGAAAAGCCGCTCCTGGA-CAGCGTTATTCCCGAGACGCAGCACAT 297
consensus_5304#2 AACGTCCAC--CGTCGAAAAGCCGCTCCTGGA-CAGCGTTATTCCCGAGACGCAGCACAT 111
consensus_5304#1 TACGGGCGGGATATCGGTTCGTCGCTGCCGGAACTGCTGTGGCAGCTGGTTGAGGTAATC 213
*** * *** * **** * *** * ** * * * * * *
consensus_5304#0 CTACATGAAGACATGGGGCTGTTGCGCATAACACCGTCTGACACGGAAGGTACAATGGCG 357
consensus_5304#2 CTACATGAAGACATGGGGCTGT-GCGCATAACACC-TCTGACACGGA--GTACA-TGGCG 166
consensus_5304#1 CCGGAAGGATGCATGATGCGGCTCGGCATGAC-CAATCCGCCCTACATTCTCGAGCACTT 272
* * * * **** ** * **** ** * ** * * * * *
consensus_5304#0 GGTC-AGCTGGCACAGATACGGGGTACAANTCTAACGAGCCGATAAAAGATTCGGGCGAC 416
consensus_5304#2 GGTC-AGCTGGCACAG-TACGGG-TACAAT-CTAACGAGC-GATAAA-GATTCGGCCGAC 220
consensus_5304#1 GGACGAGATGGCGAAAATAC----TGTCGCATCCACGCGTCTACAGCTTCCTGCACATAC 328
** * ** **** * *** * *** * * * * **
consensus_5304#0 CC-TGTAGGGTG-CTGAACAGTTGTACGGTCAAAAACCCGTCGGAAGATACGTTTCGTAA 474
consensus_5304#2 C--TGT-GGGTG-CTGAACAGTTGTACGGTCAAAAACCCGTCGGAAGATACGTTTCGTAA 276
consensus_5304#1 CGGTGCAGAGCGGCTCGGACGCAATCCTGGGCGAAATGAGGCGCGA---ATACTGCGTGA 385
* ** * * * ** * * * * *** * ** * * * *** *
consensus_5304#0 CGAAATTGAGGCGGCCCATCAAGCCGGAAAGCATGTGGTGGTAGCCGGATGTGTGCCGCA 534
consensus_5304#2 CGAAATTGAGGCGGCCCATCAAGCCGGAAAGCATGTGGTGGTAGCCGGATGTGTGCCGCA 336
consensus_5304#1 AGGATTTCGAGCGCATGGTGGACTTTCTACGCGCCCAA--GTACCGGGCATTACGATCGC 443
* * ** *** * * * ** *** * ** * *
consensus_5304#0 GGCCGCCCCGCGGTCCGATTATCTCAAAGGGCTCAGCGTGGTCGGCGTGCAGCAGATCGA 594
consensus_5304#2 GGCCGCCCCGCGGTCCGATTATCTCAAAGGGCTCAGCGTGGTCGGCGTGCAGCAGATCGA 396
consensus_5304#1 GACCGACATCATCTGCGGGTTCCCGGGCGAAACGGAAGCGGACTTTG-ACGACACGCTGG 502
* *** * * ** * * * * ** * * * ** *
consensus_5304#0 TCGTGTGGCGGAAGTCGTGGAGGAAACGCTGAAGGGCCACTCGGTCCGGTTGCTG--CAG 652
consensus_5304#2 TCGTGTGGCGGAAGTCGTGGAGGAAACGCTGAAGGGCCACTCGGTCCGGTTGCTG--CAG 454
consensus_5304#1 CACTGTGTGAGAAGTACCAGTTCCCAAGCCTGTTCATTAATCAGTTTTTCCCCCGGCCTG 562
**** ***** * * ** * ** ** * * * *
consensus_5304#0 GCGAA-GAAGGTGGACGGTCGCAAGGTAGCCGGCCCAAAGCTGGCCCTGCCGAAGGTGCG 711
consensus_5304#2 GCGANCNAANGTGGACGGTCGCAAGGTAGCCGGCC-AAAGCTGGCCCTGCCGAAGGTGCG 513
consensus_5304#1 GTACGCCGGCAGCGAAGATGACGAAGGTTCCGGCC----AATGA----GGTGAAAACGCG 614
* ** * * * * * ****** ** * *** ***
consensus_5304#0 CAAAAATCCGCTCATCGAGGTGATTCCCATCAATTCCGGCTGT-CTGAACGCGTGCACCT 770
consensus_5304#2 CAAAAATCCGCTCATCGAGGTGATTCCCATCAATTCCGGCTGT-CTGAACGCGTGCAC-- 570
consensus_5304#1 CACGAAACGGTTGACCGATTTG--TTCCATTCGTATGAGCCGTACAAAAAGTACGAAGCC 672
** ** * * * * *** ** * **** * ** ** * ** * * *
consensus_5304#0 ACTGCAAGACAAAGTTTGCCCGGGCCGATCTGGTAAGCTACCCG 814
consensus_5304#2 --------------------------------------------
consensus_5304#1 GGTACCAAGCAAACCG---------------------------- 688
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||