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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5306#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1194 fasta sequence
[GAATCGCCCGAGGTATCATCGAGGGCGGGTGGTTGCGCACGGGCGACATCGCGCACTACGACGAGCAGCTGCAGTTCTACATCACCGACCGGCTGAAGGAGCTGATCAAGGTGAAGGGCTTCCAGGTGCCGCCGGCCGAGCTGGAGTGAGCTGCTGCGATCGCACGAAGCTGGTGTGCCTGATGCCTGCGGTCGTCTGGCATGCCGCACCCTGGTGGCTGGGCGAGGTGCCGCGAGCCTTCNGTCGTACCTGAAGTGCGGGCTGCGCTGCTGTCTCCGAGGACGCACTGAATGGCGTTCATCGCGGAGAAGGTGGCCGTGTACAAGCGGCTCGAGGGTGGCGTCACCTTTCTGGACAGTATTCCGAAGAACGCGTCGGGCAAGATCCTGCGGCGGCAGCTTAAGCTCGAGCACTGCTCGTAGAACGGGCAGGGAAAGGCTCCCG-ATCACACGATATTACCCTTGCGCTAGGTTGAAGGGTTCCACTACTTGTAAAATCTCATCTTCCTCTAGGTTTTGTTTGTTTTTAGTTTTTGGGCAGGGCAATGTGAGGCGAGGTATAGGAAAGGAGCGAGAGAGCGAGAGCGAACAGGANNCATTAGTGTAGGCACGTGTGCTGTTTGTTTTTTAATTAAGCTGACCATTCTCGAGCACAGACCGTATTAGCGCGACCCCCCTTTGGGAAAATGGTCGCCAACGACCGTAGTGTGTGTGAAGGGCTCGGTTTTAGCGCGGCTCATTCCCCATTTTGTGGGGCGGCTTAGTGGTGGTTTTCTGTGGTACTGTATGTTATGTTTTTGTTTTTAATAGGAGGACGTGTTACTTTAGCTTTAGCCCGCCCTTTCCGCCTTTCTCCTCGAGCCCAGTGAGCACAAAGCATTAAGTACATGTTAAAACGTAAGCGTAAAAATAGACCATTTTGTATCCTTAAAAAGTGTAACCTGTCTATATAAATGCTCAGTGCTGCAAAATGTCACTGTCAATGTCGTAAAAAAAACTGACTAAAACAAAATCCATATCAGCGTCACGTACTCAATTGTCAAAAATCAGAGGTGATACTCAAAACGGTTGGTGTGACCAGTACATGCTTCAAGACATTGTGTGCGAACATCGCTTGGTCATTCACTATGTCATGACTTTTTTTTACTGATGATCAGTGATCAGTTTTGCNAAATGTCACTGACATAGCCATGAC]
[+] EMBL AL930170 [GAATCGCCCGAGGTATCATCGAGGGCGGGTGGTTGCGCACGGGCGACATCGCGCACTACGACGAGCAGCTGCAGTTCTACATCACCGACCGGCTGAAGGAGCTGATCAAGGTGAAGGGCTTCCAGGTGCCGCCGGCCGAGCTGGAGTGAGCTGCTGCGATCGCACGAAGCTGGTGTGCCTGATGCCTGCGGTCGTCTGGCATGCCGCACCCTGGTGGCTGGGCGAGGTGCCGCGAGCCTTCNGTCGTACCTGAAGTGCGGGCTGCGCTGCTGTCTCCGAGGACGCACTGAATGGCGTTCATCGCGGAGAAGGTGGCCGTGTACAAGCGGCTCGAGGGTGGCGTCACCTTTCTGGACAGTATTCCGAAGAACGCGTCGGGCAAGATCCTGCGGCGGCAGCTTAAGCTCGAGCACTGCTCGTAGAACGGGCAGGGAAAGGCTCCCG ATCACACGATATTACCCTTGCGCTAGGTTGAAGGGTTCCACTACTTGTAAAATCTCATCTTCCTCTAGGTTTTGTTTGTTTTTAGTTTTTGGGCAGGGCAATGTGAGGCGAGGTATAGGAAAGGAGCGAGAGAGCGAGAGCGAACAGGANNCATTAGTGTAGGCACGTGTGCTGTTTGTTTTTTAATTAAGCTGACCATTCTCGA ]
[+] EMBL BX621790 [ GGACAGTATTCCGAAGAACGCGTCGGGCAAGATCCTGCGGCGGCAGCTTAAGCTCGAGCACTGCTCGTAGAACGGGCAGGGAAAGGCTCCCGCATCACACGATATTACCCTTGCGCTAGGTTGAAGGGTTCCACTACTTGTAAAATCTCATCTTCCTCTAGGTTTTGTTTGTTTTT GTTTTTGGGCAGGGCAATGTGAGGCGAGGTATAGGAAAGGAGCGAGAGAGCGAGAGCGAA AGGA GATTAGTGTAGGCACGTGTGCTGTTTGTTTTTTAATTAAGCTGACCATTCTCGAGCACAGACCGTATTAGCGCGACCCCCCTTTGGGAAAATGGTCGCCAACGACCGTAGTGTGTGTGAAGGGCTCGGTTTTAGCGCGGCTCATTCCCCATTTTGTGGGGCGGCTTAGTGGTGGTTTTCTGTGGTACTGTATGTTATGTTTTTGTTTTTAATAGGAGGACGTGTTACTTTAGCTTTAGCCCGCCCTTTCCGCCTTTCTCCTCGAGCCCAGTGAGCACAAAGCATTAAGTACATGTTAAAACGTAAGCGTAAAAATAGACCATTTTGTATCCTTAAAAAGTGTAACCTGTCTATATAAATGCTCAGTGCTGCAAAATGTCACTGTCAATGTCGTAAAAAAAACTGACTAAAACAAAATCCATATCAGCGTCACGTACTCAATTGTCAAAAATCAGAGGTGATACTCAAAACGGTTGGTGTGACCAGTACATGCTTCAAGACATTGTGTGCGAACATCGCTTGGTCATTCACTATGTCATGACTTTTTTTTACTGATGATCAGTGATCAGTTTTGCNAAATGTCACTGACATAGCCATGAC]
consensusID : consensus_5306#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[CCGAGCGGCTCGAGGGTGGCGTCACCTTTCTGGACAGTATTCCGAAGAACGCGTCGGGCAAGATCCTGCGGCGGCAGCTTAAGCTCGAGCACTGCTCGTAGAACGGGCAGGGAAAGGCTCCCGCATCACACGATATTACCCTTGCGCTATGTTGAAGGGTTCCACTACTTGTAAAATCTCATCTTCCTCTAGGTTTTGTTTGTTTTTGTTTTTGGGCAGGGCAATGTGAAGCGAGGGATAGGAGAGCGAGAGGAGGTTAGTGTAGGCACGTGTGCTGTTTGTTTTTTAATTAAGCTGACCATTCTCGAGCTGACGCACCTGAACATTGTCTCCAACAGTGAGATGCTGGCGGTAAAGGCAGGCAACGAGCACGGTGGTGCTGCCCACCACCGACACCTTCCAGGACGTGCTGCCGTGCGTGCTGCCCTTCTTCCACATCTACGGCCTCACGGTGACGATGATCTCAAAGCTGCGGCAGGGCTGCAAGCTGGTCACGCTGCCCAACTTCAAACCCGACACGTTCCTGAACGCGCTCGCCGAACACAAGGGCACGGTGCTGCATCTCGTCCCACCCATAATTATTTTCCTCGGCCATCACGACGGCGTCAAGCCACGGCACACCGACTCCATCCGGAACGTGTTCTCGGGCGCGGCGCCGATGGGCAACGCCCGACGCCGAACGCTTTACCGCA]
[+] EMBL BM620733 [CCGAGCGGCTCGAGGGTGGCGTCACCTTTCTGGACAGTATTCCGAAGAACGCGTCGGGCAAGATCCTGCGGCGGCAGCTTAAGCTCGAGCACTGCTCGTAGAACGGGCAGGGAAAGGCTCCCGCATCACACGATATTACCCTTGCGCTATGTTGAAGGGTTCCACTACTTGTAAAATCTCATCTTCCTCTAGGTTTTGTTTGTTTTTGTTTTTGGGCAGGGCAATGTGAAGCGAGGGATAGGAGAGCGAGAGGAGGTTAGTGTAGGCACGTGTGCTGTTTGTTTTTTAATTAAGCTGACCATTCTCGAGCTGACGCACCTGAACATTGTCTCCAACAGTGAGATGCTGGCGGTAAAGGCAGGCAACGAGCACGGTGGTGCTGCCCACCACCGACACCTTCCAGGACGTGCTGCCGTGCGTGCTGCCCTTCTTCCACATCTACGGCCTCACGGTGACGATGATCTCAAAGCTGCGGCAGGGCTGCAAGCTGGTCACGCTGCCCAACTTCAAACCCGACACGTTCCTGAACGCGCTCGCCGAACACAAGGGCACGGTGCTGCATCTCGTCCCACCCATAATTATTTTCCTCGGCCATCACGACGGCGTCAAGCCACGGCACACCGACTCCATCCGGAACGTGTTCTCGGGCGCGGCGCCGATGGGCAACGCCCGACGCCGAACGCTTTACCGCA]
consensusID : consensus_5306#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence
[GCCTGNAGCAGAATCGGCACGAGGANNACACGGCCCTGGGGCCGAACCACCTCCGGCGAAGCTGCTCGTCCGGGGGCCGCAGGTCATGAAGGGCTACCACAACAACCGCAAGGCGACGGACGAGATGAGTCATCGAGGGCGGGTGGTTGCGCACGGGCGTACATCGCGCACTACGACGAGCAGCTGCAGGTTCTACATCACCGACCGGCTGAANGAGCTGATCAAGGCTGAAGGGCCTTCCAGGGGTGCCGACGGACNCGAG]
[+] EMBL BX469363 [GCCTGNAGCAGAATCGGCACGAGGANNACACGGCCCTGGGGCCGAACCACCTCCGGCGAAGCTGCTCGTCCGGGGGCCGCAGGTCATGAAGGGCTACCACAACAACCGCAAGGCGACGGACGAGATGAGTCATCGAGGGCGGGTGGTTGCGCACGGGCGTACATCGCGCACTACGACGAGCAGCTGCAGGTTCTACATCACCGACCGGCTGAANGAGCTGATCAAGGCTGAAGGGCCTTCCAGGGGTGCCGACGGACNCGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5306#0 GAATCGCCCGAGGTATCATCGAGGGCGGGTGGTTGCGCACGGGCGACATCGCGCACTACG 60
consensus_5306#2 ------------------------------------------------------------
consensus_5306#1 ------------------------CCGAGCGGCTCGAGGGTGGCGTCACCTTTCTGGACA 36
consensus_5306#0 ACGAGCAGCTGCAGTTCTACATCACCGACCGGCTGAAGGAGC---TGATCAAGGTGAAGG 117
consensus_5306#2 ---------------------------GCCTGNAGCAGAATC---GGCACGAGGANNACA 30
consensus_5306#1 GTATTCCGAAGAACGCGTCGGGCAAGATCCTGCGGCGGCAGCTTAAGCTCGAGCACTGCT 96
** * * * * * * * **
consensus_5306#0 GCTTCCAGGTGCCGCCGGCCGAGCTGGAGTGA---GCTGCTGCGATCGCACGAAGCTGGT 174
consensus_5306#2 CGGCCCTGGGGCCG--AACCACCTCCGGCGAA---GCTGCT-CGTCCG---GGGGCCGCA 81
consensus_5306#1 CGTAGAACGGGCAGGGAAAGGCTCCCGCATCACACGATATTACCCTTGCGCTATGTTGAA 156
* ** * * * * * * * * * *
consensus_5306#0 GTGCCTGATGCCTGCGGTCGTCTGGCATGCCGCACCCTGGTGGCTGGG-CGAGGTGCCGC 233
consensus_5306#2 GGTCATGAAG-----GGCTACCACAACAACCGCAAGGCGACGGACGAGATGAGTCATCGA 136
consensus_5306#1 GGGTTCCACTACTTGTAAAATCTCATCTTCCTCTAGGTTTTGTTTGTTTTTGTTTTTGGG 216
* * * ** * * * *
consensus_5306#0 GAGCCTTCNGTCGTACCTGAAGTGCGGGCTGCGCTGCTGTCTCCGAGGACGCACTGAATG 293
consensus_5306#2 GGGCGGGTGGTTGCGCACG------GGCGTACATCGCGCACTACGACGAGCAGCTGCAGG 190
consensus_5306#1 CAGGGCAATGTGAAGCGAGGGATAGGAGAGCGAGAGGAGGTTAGTGTAGGCACGTGTGCT 276
* ** * * * * * **
consensus_5306#0 GCGTTCATCGCGGAGAAGGTGGCCGTGTACAAGCGGCTCGAGGGTGGCGTCACCTTTCTG 353
consensus_5306#2 TTCTACATCACCGACCGGCTGA------ANGAGCTGATCAAGGCTGAAGG-GCCTTCCAG 243
consensus_5306#1 GTTTGTTTTTTAATTAAGCTGACCATTCTCGAGCTGACGCACCTGAACATTGTCTCCAAC 336
* * * ** *** * * **
consensus_5306#0 GACAGTATTCCGAAGAACGCGTCGGGCAAGATCCTGCGGCGGCAGCTTAAGCTCGAGCAC 413
consensus_5306#2 GG----GTGCCGACGGACNCGAG------------------------------------- 262
consensus_5306#1 AGTGAGATGCTGGCGGTAAAGGCAGGCAACGAGCACGGTGGTGCTGCCCACCACCGACAC 396
* * * * *
consensus_5306#0 TGCTCGTAGAACGGGCAGGGAAAGGCTCCCGATCACACGATATTACCCTTGCGCTAGGTT 473
consensus_5306#2 ------------------------------------------------------------
consensus_5306#1 CTTCCAGGACGTGCTGCCGTGCGTGCTGCCCTTCTTCCACATCTACGGCCTCACGGTGAC 456
consensus_5306#0 GAAGGGTTCCACTACTTGTAAAATCTCATCTTCCTCTAGGTTTTGTTTGTTTTTAGTTTT 533
consensus_5306#2 ------------------------------------------------------------
consensus_5306#1 GATGATCTCAA--AGCTGCGGCAGGGCTGCAAGCTGGTCACGCTGCCCAACTTCAAACCC 514
consensus_5306#0 TGGGCAGGGCAATGTGAGGCGAGGTATAGGAAAGGAGCGAGAGAGCGAGAGCGAACAGGA 593
consensus_5306#2 ------------------------------------------------------------
consensus_5306#1 GACACGTTCCTGAACGCGCTCGCCGAACACAAGGGCACGGTGCTGCATCTCGTCCCACCC 574
consensus_5306#0 NNCATTAGTGTAGGCACGTGTGCTGTTTGTTTTTTAATTAAGCTGACCATTCTCGAGCAC 653
consensus_5306#2 ------------------------------------------------------------
consensus_5306#1 ATAATTATTTTCCTCGGCCATCACGACGGCGTCAAGCCACGGCACACCGACTCCATCCGG 634
consensus_5306#0 AGACCGTATTAGCGCGACCCCCCTTTGGGAAAATGGTCGCCAACGACCGTAGTGTGTGTG 713
consensus_5306#2 ------------------------------------------------------------
consensus_5306#1 AACGTGTTCTCGGGCGCGGCGCCGATGGGCAACGCCCGACGCCGAACGCTTTACCGCA-- 692
consensus_5306#0 AAGGGCTCGGTTTTAGCGCGGCTCATTCCCCATTTTGTGGGGCGGCTTAGTGGTGGTTTT 773
consensus_5306#2 ------------------------------------------------------------
consensus_5306#1 ------------------------------------------------------------
consensus_5306#0 CTGTGGTACTGTATGTTATGTTTTTGTTTTTAATAGGAGGACGTGTTACTTTAGCTTTAG 833
consensus_5306#2 ------------------------------------------------------------
consensus_5306#1 ------------------------------------------------------------
consensus_5306#0 CCCGCCCTTTCCGCCTTTCTCCTCGAGCCCAGTGAGCACAAAGCATTAAGTACATGTTAA 893
consensus_5306#2 ------------------------------------------------------------
consensus_5306#1 ------------------------------------------------------------
consensus_5306#0 AACGTAAGCGTAAAAATAGACCATTTTGTATCCTTAAAAAGTGTAACCTGTCTATATAAA 953
consensus_5306#2 ------------------------------------------------------------
consensus_5306#1 ------------------------------------------------------------
consensus_5306#0 TGCTCAGTGCTGCAAAATGTCACTGTCAATGTCGTAAAAAAAACTGACTAAAACAAAATC 1013
consensus_5306#2 ------------------------------------------------------------
consensus_5306#1 ------------------------------------------------------------
consensus_5306#0 CATATCAGCGTCACGTACTCAATTGTCAAAAATCAGAGGTGATACTCAAAACGGTTGGTG 1073
consensus_5306#2 ------------------------------------------------------------
consensus_5306#1 ------------------------------------------------------------
consensus_5306#0 TGACCAGTACATGCTTCAAGACATTGTGTGCGAACATCGCTTGGTCATTCACTATGTCAT 1133
consensus_5306#2 ------------------------------------------------------------
consensus_5306#1 ------------------------------------------------------------
consensus_5306#0 GACTTTTTTTTACTGATGATCAGTGATCAGTTTTGCNAAATGTCACTGACATAGCCATGA 1193
consensus_5306#2 ------------------------------------------------------------
consensus_5306#1 ------------------------------------------------------------
consensus_5306#0 C 1194
consensus_5306#2 -
consensus_5306#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||