|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5316#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1243 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGGCGAAGGACGATAGAGGAAAGGCTAGGATAGGGTAAAAGTGATTGGTAAGGAACGGTGGAAGCGTTTTGTCAGCAAGAGTCAGCCGACGACGAACAACGATTTGGTGGTGAAGGGCAGCATGTTTGTGGTTTAATTTGAAATAGACATTAATTGATTTTTTTTTCTTCAAGCACGTGTTGGCCACGGACGGAAGGGAACATGAAAAATGGGACGAGAAAACAAAAAATCTAATTCTAATTAGACACTACTACTGCACACGGGAAAAGCTGATAGGAATAAGAACGATTAATAGGTATCAAAACAAAAGGAAGGGAAAAAACACACAAGAAAGTGAAGATTTCTTTACTACAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATAAAATCAAATGGGAACAAACTCCACCACGATGAGGCTATGCTGATGCAAATGAAGGAAAGGAGGTGATCGACTAAATCAGGTGATGAACACGTTTCTGCCAAATAGGAGGAAAGATGGTAAATGAAAGTCCAAATTAGACTTCAAACAGATGAATGCTATATATTTTGTAATTTCAATTATTATATCCTTCGAAGATAGAGTCCTGTGTGTCATCCGCTCACTGGAGAGAGAGAGAGAGAGAGAGAGAGATGTGTATGTGTGTGTATAGAAAATGAACAAGCAGTAAACGAATTCGGGAAAAAATATCTAATTTTATGCATCGCTTCTGCTAATTTCTATGCACTGCAACTCTATGCCAACCAACTGATTATCTACAGTTTACTATATTCTTTTTAGAGCATTCAAGCCAAAATTTGGGCCACATAAAACAGAAAGGCAAAGAAATGGGAGAATCGTGGTGAAAGTAGCATAGACGGAAGCAAAATGCCCGTGAATTGACGGCTAAACCGGCAATCGACACACACACACGCAAATAGACACGGTAGACGGATAGGGCTCGAGAATCGGTGGATGCATGATAATAATTACACGCAATGGAAATCCATGTAAGAGACACGTTACTACTACTACTACTACTATAGAGCATCTTCTAGTAAGTTTGAATTGAGATATAACATTTCGGGAGAGTACTGCCGCCGAAGATAATAGAAAAGAAAGAAAAAACTCACTGTTTAGAACCAAACCGATCACACAATAAAACAA]
[+] EMBL BM654074 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCGAAGGACGATAGAGGAAAGGCTAGGATAGGGTAAAAGTGATTGGTAAGGAACGGTGGAAGCGTTTTGTCAGCAAGAGTCAGCCGACGACGAACAACGATTTGGTGGTGAAGGGCAGCATGTTTGTGGTTTAATTTGAAATAGACATTAATTGATTTTTTTTTCTTCAAGCACGTGTTGGCCACGGACGGAAGGGAACATGAAAAATGGGACGAGAAAACAAAAAATCTAATTCTAATTAGACACTACTACTGCACACGGGAAAAGCTGATAGGAATAAGAACGATTAATAGGTATCAAAACAAAAGGAAGGGAAAAAACACACAAGAAAGTGAAGATTTCTTTACTACAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATAAAATCAAATGGGAACAAACTCCACCACGATGAGGCTATGCTGATGCAAATGAAGGAAAGGAGGTGATCGACTAAATCAGGTGATGAACACGTTTCTGCCAAATAGGAGGAAAGATGGTAAATGAAAGTC ]
[+] EMBL BX617501 [ CTAAATCAGGTGATGAACACGTCTCTGCCAAATAGGAGGAAAGATGGTAAATGAAAGTCCAAATTAGACTTCAAACAGATGAATGCTATATATTTTGTAATTTCAATTATTATATCCTTCGAAGATAGAGTCCTGTGTGTCATCCGCTCACTGGAGAGAGAGAGAGAGAGAGAGAGAGATGTGTATGTGTGTGTATAGAAAATGAACAAGCAGTAAACGAATTCGGGAAAAAATATCTAATTTTATGCATCGCTTCTGCTAATTTCTATGCACTGCAACTCTATGCCAACCAACTGATTATCTACAGTTTACTATATTCTTTTTAGAGCATTCAAGCCAAAATTTGGGCCACATAAAACAGAAAGGCAAAGAAATGGGAGAATCGTGGTGAAAGTAGCATAGACGGAAGCAAAATGCCCGTGAATTGACGGCTAAACCGGCAATCGACACACACACACGCAAATAGACACGGTAGACGGATAGGGCTCGAGAATCGGTGGATGCATGATAATAATTACACGCAATGGAAATCCATGTAAGAGACACGTTACTACTACTACTACTACTATAGAGCATCTTCTAGTAAGTTTGAATTGAGATATAACATTTCGGGAGAGTACTGCCGCCGAAGATAATAGAAAAGAAAGAAAAAACTCACTGTTTAGAACCAAACCGATCACACAATAAAACAA]
consensusID : consensus_5316#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[CCGGGAGATACAATTGAAGCTGAGGCGCAAACACTAGGTAGAGAGAAAGGGATAGAGAAAGTGAGAGGGGAAAGATAAATAATATATAAATATATTCATCAGCTGTGATCACCTAGTATATATTAACAAATACTAAACTAAAGCTAGTAAAGCGATGCTAATTAGACACCTAGATCGTAGTAGAGAATTGAAAGACACATTCAAGTACACACCTACACTATACGGAGGCGAAGGACGATAAAGGAAAGGCTAGGATAGGGTAAAAGTGATTGGTAAGGAACGGTGGAAGCGTTTTGTCAGCAAGAGTCAGCCGACGACGAACAACGATTTGGGTGGTGAAGGGCAGCATGTCTGTGGTTTAATTTGAAATAGACATTAATTGATTTTTTTTTCTTCAAGCACGTGTTGGCCACGGACGGAAGGGAACATGAAAAATGGGACGAGAAAACAAAAAATCTAATTCTAATTAGACACTACTACTGCACACGGGAAAAGCTGATAGGAATAAGAACGATTAATAGGTATCAAAACAAAAGGAAAGGAAAAAACACACACAAGAAAGTGAAGATTTCTTTACTACCAACACAGACACACACATAAAATCAAATGGGAACAAACTCAACCACGATGAGGCTATGCTGATGCAAATGAAGGAAAGGAGGTGATCGACTAAATCAGGTGATGAA]
[+] EMBL BM650255 [CCGGGAGATACAATTGAAGCTGAGGCGCAAACACTAGGTAGAGAGAAAGGGATAGAGAAAGTGAGAGGGGAAAGATAAATAATATATAAATATATTCATCAGCTGTGATCACCTAGTATATATTAACAAATACTAAACTAAAGCTAGTAAAGCGATGCTAATTAGACACCTAGATCGTAGTAGAGAATTGAAAGACACATTCAAGTACACACCTACACTATACGGAGGCGAAGGACGATAAAGGAAAGGCTAGGATAGGGTAAAAGTGATTGGTAAGGAACGGTGGAAGCGTTTTGTCAGCAAGAGTCAGCCGACGACGAACAACGATTTGGGTGGTGAAGGGCAGCATGTCTGTGGTTTAATTTGAAATAGACATTAATTGATTTTTTTTTCTTCAAGCACGTGTTGGCCACGGACGGAAGGGAACATGAAAAATGGGACGAGAAAACAAAAAATCTAATTCTAATTAGACACTACTACTGCACACGGGAAAAGCTGATAGGAATAAGAACGATTAATAGGTATCAAAACAAAAGGAAAGGAAAAAACACACACAAGAAAGTGAAGATTTCTTTACTACCAACACAGACACACACATAAAATCAAATGGGAACAAACTCAACCACGATGAGGCTATGCTGATGCAAATGAAGGAAAGGAGGTGATCGACTAAATCAGGTGATGAA]
consensusID : consensus_5316#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence
[GGCAGAATCGCCACGAGGTGTAAAAAACACACACAAGAAAGTGACAGATTTCTTTACTACAAACACAGACACACACATAAAATCAAATGGGAACAAACTCAACCACGATAGGCTATGCTGATGCAAATGAAGGAAAGGAGGTGATCGACTAAATCAGGTGATGAACACGTTTCTGCAAAATAGGAGGAAAGATGGTAAATGAAAGTCCAAAGTTAGACTTCAACAGATGAATGCTATATATTGTGTAATTTCAATTATTAGTATCCTTCGAAGATAGAGTCCTGGTGTGTCAACCGGTCACTGGAGAGAGAGAGAGAGAAGAGATGTGTATGTGTGTGGTGAAAACA]
[+] EMBL BX469587 [GGCAGAATCGCCACGAGGTGTAAAAAACACACACAAGAAAGTGACAGATTTCTTTACTACAAACACAGACACACACATAAAATCAAATGGGAACAAACTCAACCACGATAGGCTATGCTGATGCAAATGAAGGAAAGGAGGTGATCGACTAAATCAGGTGATGAACACGTTTCTGCAAAATAGGAGGAAAGATGGTAAATGAAAGTCCAAAGTTAGACTTCAACAGATGAATGCTATATATTGTGTAATTTCAATTATTAGTATCCTTCGAAGATAGAGTCCTGGTGTGTCAACCGGTCACTGGAGAGAGAGAGAGAGAAGAGATGTGTATGTGTGTGGTGAAAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5316#0 CCGCCCACGCGTCCGCCCACGCGTCCGGGCGAAGGACGATAGAGGAAAGGCTAGGATAGG 60
consensus_5316#2 ------------------------------------------------------------
consensus_5316#1 ------------------------------------------------------------
consensus_5316#0 GTAAAAGTGATTGGTAAGGAACGGTGGAAGCGTTTTGTCAGCAAGAGTCAGCCGACGACG 120
consensus_5316#2 ------------------------------------------------------------
consensus_5316#1 ------------------------------------------------------------
consensus_5316#0 AACAACGATTTGGTGGTGAAGGGCAGCATGTTTGTGGTTTAATTTGAAATAGACATTAAT 180
consensus_5316#2 ------------------------------------------------------------
consensus_5316#1 ------------------------------------------------------------
consensus_5316#0 TGATTTTTTTTTCTTCAAGCACGTGTTGGCCACGGACGGAAGGGAACATGAAAAATGGGA 240
consensus_5316#2 ------------------------------------------------------------
consensus_5316#1 ------------------------------------------------------------
consensus_5316#0 CGAGAAAACAAAAAATCTAATTCTAATTAGACACTACTACTGCACACGGGAAAAGCTGAT 300
consensus_5316#2 ------------------------------------------------------------
consensus_5316#1 -----------------------------------------------------------C 1
consensus_5316#0 AGGAATAAGAACGATTAATAGGTATCAAAACAAAAGGAAGGGAAAAAACACACAAGAAAG 360
consensus_5316#2 ------------------------------------------------------------
consensus_5316#1 CGGGAGATACAATTGAAGCTGAGGCGCAAACACTAGGTAGAGAGAAAGGGATAGAGAAAG 61
consensus_5316#0 TGAAGATTTCTTTACTACAAACACACACACACACACACACACAC-ACACACACACACACA 419
consensus_5316#2 ---------------------------------------GGCAG-AATCGC-CACGAGGT 19
consensus_5316#1 TGAGAGGGGAAAGATAAATAATATATAAATATATTCATCAGCTGTGATCACCTAGTATAT 121
* * * *
consensus_5316#0 CACACACACACACACACACACACACACACACACAC-ACACACACACACACACACACACAC 478
consensus_5316#2 GTAAAAAACACACACA-AGAAAGTGACAGATTTCT-TTAC-TACAAACACAGACACACAC 76
consensus_5316#1 ATTAACAAATACTAAACTAAAGCTAGTAAAGCGATGCTAATTAGACACCTAGATCGTAGT 181
* * * * * * * * * * ** * *
consensus_5316#0 ATAAAATCAAATGGGAACAAACTCCACCACGATGAGGCTATGCTGATGCAAA------TG 532
consensus_5316#2 ATAAAATCAAATGGGAACAAACTCAACCACGAT-AGGCTATGCTGATGCAAA------TG 129
consensus_5316#1 AGAGAATTGAA-AGACACATTCAAGTACACACCTACACTATACGGAGGCGAAGGACGATA 240
* * *** ** * *** * *** * **** * ** ** ** *
consensus_5316#0 AAGGAAAGGAGGTGATCGACTAAA---------TCAGG--TGATGAACACGTTTCTGCCA 581
consensus_5316#2 AAGGAAAGGAGGTGATCGACTAAA---------TCAGG--TGATGAACACGTTTCTGCAA 178
consensus_5316#1 AAGGAAAGGCTAGGATAGGGTAAAAGTGATTGGTAAGGAACGGTGGAAGCGTTTTGTCAG 300
********* *** * **** * *** * ** * ***** *
consensus_5316#0 AATAGGAGGAAAGATGGTAAATGAAAGTCCAAA-TTAGACTTCAAACAGATGAATGCTAT 640
consensus_5316#2 AATAGGAGGAAAGATGGTAAATGAAAGTCCAAAGTTAGACTTCAA-CAGATGAATGCTAT 237
consensus_5316#1 CAAGAGTCAGCCGACGACGAACAACGATTTGGGTGGTGAAGGGCAGCATGTCTGTGGTTT 360
* * ** * ** * * ** * ** * ** * *
consensus_5316#0 ATATTT---TGTAATTTCAATTATTA-TATCCTTCGAAGATAGAGTCCTG-TGTGTCATC 695
consensus_5316#2 ATATTG---TGTAATTTCAATTATTAGTATCCTTCGAAGATAGAGTCCTGGTGTGTCAAC 294
consensus_5316#1 AATTTGAAATAGACATTAATTGATTTTTTTTTCTTCAAGCACGTGTTGGCCACGGACGGA 420
* ** * * ** * * *** * * * *** * ** * *
consensus_5316#0 CGCTCACTGGAGAGAGAGAGAGAGAGAGAGAGAGATGTGTATGTGTGTGTATAGAAAATG 755
consensus_5316#2 CGGTCACTGGAGAGAGAGAGAGAGA-----AGAGATGTGTATGTGTGTGGTGAAAACA-- 347
consensus_5316#1 AGGGAACATGAAAAATGGGACGAGAAAACAAAAAATCTAATTCTAATTAGACACTACTAC 480
* ** ** * * * **** * * ** * * * * * *
consensus_5316#0 AACAAGCAGTAAACGAATTCGGGAAAAAATATCTAATTTTATGCATCGCTTCTGCTAATT 815
consensus_5316#2 ------------------------------------------------------------
consensus_5316#1 TGCACACGGGAAAAGCTGATAGGAATAAGAACGATTAATAGGTATCAAAACAAAAGGAAA 540
consensus_5316#0 TCTATGCACTGCAACTCTATGCCAACCAACTGATTATCTACAGTTTACTATATTCTTTTT 875
consensus_5316#2 ------------------------------------------------------------
consensus_5316#1 GGAAAAAACACACACAAGAAAGTGAAGATTTCTTTACTACCAACACAGACACACACATAA 600
consensus_5316#0 AGAGCATTCAAGCCAAAATTTGGGCCACATAAAACAGAAAGGCAAAGAAATGGGAGAATC 935
consensus_5316#2 ------------------------------------------------------------
consensus_5316#1 AATCAAATGGGAACAAACTCAACCACGATGAGGCTATGCTGATGCAAATGAAGGAAAGGA 660
consensus_5316#0 GTGGTGAAAGTAGCATAGACGGAAGCAAAATGCCCGTGAATTGACGGCTAAACCGGCAAT 995
consensus_5316#2 ------------------------------------------------------------
consensus_5316#1 GGTGATCGACTAAATCAGGTGATGAA---------------------------------- 686
consensus_5316#0 CGACACACACACACGCAAATAGACACGGTAGACGGATAGGGCTCGAGAATCGGTGGATGC 1055
consensus_5316#2 ------------------------------------------------------------
consensus_5316#1 ------------------------------------------------------------
consensus_5316#0 ATGATAATAATTACACGCAATGGAAATCCATGTAAGAGACACGTTACTACTACTACTACT 1115
consensus_5316#2 ------------------------------------------------------------
consensus_5316#1 ------------------------------------------------------------
consensus_5316#0 ACTATAGAGCATCTTCTAGTAAGTTTGAATTGAGATATAACATTTCGGGAGAGTACTGCC 1175
consensus_5316#2 ------------------------------------------------------------
consensus_5316#1 ------------------------------------------------------------
consensus_5316#0 GCCGAAGATAATAGAAAAGAAAGAAAAAACTCACTGTTTAGAACCAAACCGATCACACAA 1235
consensus_5316#2 ------------------------------------------------------------
consensus_5316#1 ------------------------------------------------------------
consensus_5316#0 TAAAACAA 1243
consensus_5316#2 --------
consensus_5316#1 --------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||