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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5325#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 977 fasta sequence
[GATCGCCCGAGGTTTTTCCCAGTTTAAGTTCGTCGTNGTGCATCAAACAGTGAATCGTTGTGTTTTGAGACGTGATTGTTTAAAAGCTGTTTAGTTAATGTGTCGCTATTACCTACAGATGGATTGGTTACAGTGTGTGGATTTGTTTGCACAATCAACCACTTTATGAAGTAGGATTACTAAGTCTTTCGAAAACCAATGCGATAACATAAGCCGCAAATTATGCGTACTACGTCAGTGTTGAGTAACACATGTGTTCGCGTTTACAGTGGCAATTGGTGCGGAGGAACATCCAAGGCCTCTTATCTTGATAGTGTCGTTCCTGACGTTTATATGGCGTCATAATAGACACAGACATCGGGCTGAATTTGTGCGGCACGCATCGAAACATTCCTTCCGATTTGGGAACAATGCAAACGAGCCAGCTGAACACTGGTTCGAGCGGACACTTGAACAGTTCCTAGAGTTACTCGAGCTCGATTCCAACGTTACCGCAGACGAGAGCCGGAACAGTTTCGAACCATTGAATTGTCCACGATCCAATACGCTGTTCACTGCGTTTACGGGGAGCACACTAGAGGAAAGTTTGTGGCATTACTTTTCGCTGGTGGCCATACAAAATAGCATTAAGACGACATCGGAAGAATATCAAGCACAAATTATGCTGACTAATGGAACATCGGTTGAACTGGGGACACTGTTTGAAAGTCTTCCGTTTGACGTGATTCGTATGAATATCATTTGGTGCTATAACTTTCCTGATATGAACATTTTGAACAGTGACACAGCCATTCAGATTGACAAAGGCGTTAAGCAGCTATTCATACTCAATAATCAAGCTAAACGATTTGAAGAAATCCTAAAAGTACCATGGGAACAACATACTCAGTTCTTTAGGCTTCGAGCGGATGCGGAAAGTATGGCCCAAAACGTATTGGGCGACATTCGCCAGCGTTCTAAACTGTACGGCGATGANG]
[+] EMBL AL930913 [GATCGCCCGAGGTTTTTCCCAGTTTAAGTTCGTCGTNGTGCATCAAACAGTGAATCGTTGTGTTTTGAGACGTGATTGTTTAAAAGCTGTTTAGTTAATGTGTCGCTATTACCTACAGATGGATTGGTTACAGTGTGTGGATTTGTTTGCACAATCAACCACTTTATGAAGTAGGATTACTAAGTCTTTCGAAAACCAATGCGATAACATAAGCCGCAAATTATGCGTACTACGTCAGTGTTGAGTAACACATGTGTTCGCGTTTACAGTGGCAATTGGTGCGGAGGAACATCCAAGGCCTCTTATCTTGATAGTGTCGTTCCTGACGTTTATATGGCGTCATAATAGACACAGACATCGGGCTGAATTTGTGCGGCACGCATCGAAACATTCCTTCCGATTTGGGAACAATGCAAACGAGCC ]
[+] EMBL BX624084 [ ATCGGCCTGAATTTGTGCGGCACGCATCGAAACATTCCTTCCGATTTGGGAACAATGCAAACGAGCCAGCTGAACACTGGTTCGAGCGGACACTTGAACAGTTCCTAGAGTTACTCGAGCTCGATTCCAACGTTACCGCAGACGAGAGCCGGAACAGTTTCGAACCATTGAATTGTCCACGATCCAATACGCTGTTCACTGCGTTTACGGGGAGCACACTAGAGGAAAGTTTGTGGCATTACTTTTCGCTGGTGGCCATACAAAATAGCATTAAGACGACATCGGAAGAATATCAAGCACAAATTATGCTGACTAATGGAACATCGGTTGAACTGGGGACACTGTTTGAAAGTCTTCCGTTTGACGTGATTCGTATGAATATCATTTGGTGCTATAACTTTCCTGATATGAACATTTTGAACAGTGACACAGCCATTCAGATTGACAAAGGCGTTAAGCAGCTATTCATACTCAATAATCAAGCTAAACGATTTGAAGAAATCCTAAAAGTACCATGGGAACAACATACTCAGTTCTTTAGGCTTCGAGCG ]
[+] EMBL BX624028 [ ATTTGTGCGGCACGCATCGAAACATTCCTTCCGATTTGGGAACAATGCAAACGAGCCAGCTGAACACTGGTTCGAGCGGACACTTGAACAGTTCCTAGAGTTACTCGAGCTCGATTCCAACGTTACCGCAGACGAGAGCCGGAACAGTTTCGAACCATTGAATTGTCCACGATCCAATACGCTGTTCACTGCGTTTACGGGGAGCACACTAGAGGAAAGTTTGTGGCATTACTTTTCGCTGGTGGCCATACAAAATAGCATTAAGACGACATCGGAAGAATATCAAGCACAAATTATGCTGACTAATGGAACATCGGTTGAACTGGGGACACTGTTTGAAAGTCTTCCGTTTGACGTGATTCGTATGAATATCATTTGGTGCTATAACTTTCCTGATATGAACATTTTGAACAGTGACACAGCCATTCAGATTGACAAAGGCGTTAAGCAGCTATTCATACTCAATAATCAAGCTAAACGATTTGAAGAAATCCTAAAAGTACCATGGGAACAACATACTCAGTTCTTTAGGCTTCGAGCGGATGCGGAAAGTATGGCCCAAAACGTATTGGGCGACATTCGCCAGCGTTCTAAACTGTACGGCGATGANG]
consensusID : consensus_5325#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence
[GCAGAATCNCCACGAGNNTCAGAAATTAGCGTACTACGTCACTTTGATAAAATGTTTCGCTTTACGTGGCAATTGGTGCGGAGGAACATCAAGCCTCTTATCTTGATAGTGTCGTTCCTGACGTTTATATGGCTCATAATAGACACAGCACATCGGCCTGAATTTGTGCGGCACGCATCGAAACATTCCTTCCGATTTGGGAACAATGCAAACGAGCCAGCTGAACACTGGTTCGAGCGGACACTTGAACAGTTCCTAGAGTTACTCGAGCTCGATTCCAACGTTACCGCAGACGAGAGCCGGAACAGTTTCGAACCATTGAATTGTCCACGATCCAATACGCTGTTCACTGCGTTTACGGGGAGCACACTAGAGGAAAGTTTGTGGCATTACTTTTACGCTGGTGGCCATACAAAATAGCATTAAGACGACATCGGAAGAATATCAAGCACAAATTATGCTGACCTAACTGGAACATCGGTTGAACTGGGGACACTGTTTCGAAAGTCTTNGCCGTTTGACGTGATTCGTCATGCAATATCATTTCGGTCGCTATAAACTTTACCTGATATGAAACATTTTGAACAGGTGACCAC]
[+] EMBL BX467277 [GCAGAATCNCCACGAGNNTCAGAAATTAGCGTACTACGTCACTTTGATAAAATGTTTCGCTTTACGTGGCAATTGGTGCGGAGGAACATCAAGCCTCTTATCTTGATAGTGTCGTTCCTGACGTTTATATGGCTCATAATAGACACAGCACATCGGCCTGAATTTGTGCGGCACGCATCGAAACATTCCTTCCGATTTGGGAACAATGCAAACGAGCCAGCTGAACACTGGTTCGAGCGGACACTTGAACAGTTCCTAGAGTTACTCGAGCTCGATTCCAACGTTACCGCAGACGAGAGCCGGAACAGTTTCGAACCATTGAATTGTCCACGATCCAATACGCTGTTCACTGCGTTTACGGGGAGCACACTAGAGGAAAGTTTGTGGCATTACTTTTACGCTGGTGGCCATACAAAATAGCATTAAGACGACATCGGAAGAATATCAAGCACAAATTATGCTGACCTAACTGGAACATCGGTTGAACTGGGGACACTGTTTCGAAAGTCTTNGCCGTTTGACGTGATTCGTCATGCAATATCATTTCGGTCGCTATAAACTTTACCTGATATGAAACATTTTGAACAGGTGACCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5325#0 GATCGCCCGAGGTTTTTCCCAGTTTAAGTTCGTCGTNGTGCATCAAACAGTGAATCGTTG 60
consensus_5325#1 ------------------------------------------------------------
consensus_5325#0 TGTTTTGAGACGTGATTGTTTAAAAGCTGTTTAGTTAATGTGTCGCTATTACCTACAGAT 120
consensus_5325#1 ------------------------------------------------------------
consensus_5325#0 GGATTGGTTACAGTGTGTGGATTTGTTTGCACAATCAACCACTTTATGAAGTAGGATTAC 180
consensus_5325#1 ------------------------------------------------------------
consensus_5325#0 TAAGTCTTTCGAAAACCAATGCGATAACATAAGCCGCAAATTATGCGTACTACGTCAGTG 240
consensus_5325#1 ---------------GCAGAATCNCCACGAGNNTCAGAAATTA-GCGTACTACGTCACT- 43
** ** * ****** ************* *
consensus_5325#0 TTGAGTAACACATGTGTTCGCGTTTACAGTGGCAATTGGTGCGGAGGAACATCCAAGGCC 300
consensus_5325#1 TTGATAAA---ATGT-TTCGC-TTTAC-GTGGCAATTGGTGCGGAGGAACATC--AAGCC 95
**** ** **** ***** ***** ************************* * ***
consensus_5325#0 TCTTATCTTGATAGTGTCGTTCCTGACGTTTATATGGCGTCATAATAGACACAG-ACATC 359
consensus_5325#1 TCTTATCTTGATAGTGTCGTTCCTGACGTTTATATGGC-TCATAATAGACACAGCACATC 154
************************************** *************** *****
consensus_5325#0 GGGCTGAATTTGTGCGGCACGCATCGAAACATTCCTTCCGATTTGGGAACAATGCAAACG 419
consensus_5325#1 GGCCTGAATTTGTGCGGCACGCATCGAAACATTCCTTCCGATTTGGGAACAATGCAAACG 214
** *********************************************************
consensus_5325#0 AGCCAGCTGAACACTGGTTCGAGCGGACACTTGAACAGTTCCTAGAGTTACTCGAGCTCG 479
consensus_5325#1 AGCCAGCTGAACACTGGTTCGAGCGGACACTTGAACAGTTCCTAGAGTTACTCGAGCTCG 274
************************************************************
consensus_5325#0 ATTCCAACGTTACCGCAGACGAGAGCCGGAACAGTTTCGAACCATTGAATTGTCCACGAT 539
consensus_5325#1 ATTCCAACGTTACCGCAGACGAGAGCCGGAACAGTTTCGAACCATTGAATTGTCCACGAT 334
************************************************************
consensus_5325#0 CCAATACGCTGTTCACTGCGTTTACGGGGAGCACACTAGAGGAAAGTTTGTGGCATTACT 599
consensus_5325#1 CCAATACGCTGTTCACTGCGTTTACGGGGAGCACACTAGAGGAAAGTTTGTGGCATTACT 394
************************************************************
consensus_5325#0 TTT-CGCTGGTGGCCATACAAAATAGCATTAAGACGACATCGGAAGAATATCAAGCACAA 658
consensus_5325#1 TTTACGCTGGTGGCCATACAAAATAGCATTAAGACGACATCGGAAGAATATCAAGCACAA 454
*** ********************************************************
consensus_5325#0 ATTATGCTGACTAA--TGGAACATCGGTTGAACTGGGGACACTGTTT-GAAAGTCTTC-- 713
consensus_5325#1 ATTATGCTGACCTAACTGGAACATCGGTTGAACTGGGGACACTGTTTCGAAAGTCTTNGC 514
*********** * ******************************* *********
consensus_5325#0 CGTTTGACGTGATTCGT-ATG-AATATCATTTGG--TGCTATAACTTT--CCTGATATGA 767
consensus_5325#1 CGTTTGACGTGATTCGTCATGCAATATCATTTCGGTCGCTATAAACTTTACCTGATATGA 574
***************** *** ********** * ******* ** **********
consensus_5325#0 A-CATTTTGAACAGTGACACAGCCATTCAGATTGACAAAGGCGTTAAGCAGCTATTCATA 826
consensus_5325#1 AACATTTTGAACAG-GTGACCAC------------------------------------- 596
* ************ * ** *
consensus_5325#0 CTCAATAATCAAGCTAAACGATTTGAAGAAATCCTAAAAGTACCATGGGAACAACATACT 886
consensus_5325#1 ------------------------------------------------------------
consensus_5325#0 CAGTTCTTTAGGCTTCGAGCGGATGCGGAAAGTATGGCCCAAAACGTATTGGGCGACATT 946
consensus_5325#1 ------------------------------------------------------------
consensus_5325#0 CGCCAGCGTTCTAAACTGTACGGCGATGANG 977
consensus_5325#1 -------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||