cluster # 533

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Anopheles gambiae
cluster # 533 cluster # 533 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_533#0 length = 954 sequences # 1

consensus_533#1 length = 447 sequences # 1

consensusID : consensus_533#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 954
fasta sequence

                              [CCAGATCGCGCACGAGGTGAGGATCCAGTTCGGAGGACGCAATCATTCCGCAGCGTGGTGAGGAGCTGCTGAAGCAACCGAACGTGACCAACGTGCCGCTGATTCACGGTGTCACCAGTGGGGAGGGTTTGGTGTTTTATGGGCTGCTGCAGCAGCGGTTTGACGAGGTTACGACCAATCTGGCCAGCCTGCTGCCGCTCGATCTGGGCATACCGCGTGACTTTGCGCCGGCCGTAATCGAGGAGATACGTCAGTTCTACTTCCAGGACAAACCGATCGATCGGGATGTATTGGGCCACCTGCTCGATCTGGTGGGAGACGTTGGCTTTTACTTCCCGGTGTACGCAGCGGCGGAGCTGCATTCCCGCTTCCAGCAGGAGGCACCACTGTACTTCTATCGCTTCTCGTACGAGAGCGAGCTGAACCAGCTGCGCAAGCAGTTCAGCGTACCGGACGGTACACCGGGAGCGGCCCATGCCGACGAGTTGTCCTATCTGTTCAATGGCAGTCAAATTACTGTCCCGGTTGAGGCCGGCTCGGTGGCGGATCAGGGCCGCGACACTGCTCTGCCGTCTGTGGACCAACTTTGCCAAGTTTGGCCAGGCCTACGGCCGGAGGAGACGATGTTGGGCTTCCAGTGGGACCCGCGTGGCACCGACGCGTGCACGGGGAACCGTTCGTGCTGACGCGCCCTCGAAGCTGAACNGAGCAGGGTGCAAGTGTGGAAGAAATCCGAATGCAGGAAGCNCGGGATTACCAGTNTTTTTGGAGGGTCCCGACTGGCCCGAAACGGCTTTACAATTCCCCAAATCCTGGGGTTGGGCCGTATGAGAGGGCGGGGACGGAAGTTNCTCCAATTGTCGCATAATCTTCGTTCAATNNAGAGCGNTTAGAAANATTCCGTTAACACTTTTCAGGGCCAAACNGGGGGTACNCTGGTAGCANNACACGAAC]

[+] EMBL BX467657             [CCAGATCGCGCACGAGGTGAGGATCCAGTTCGGAGGACGCAATCATTCCGCAGCGTGGTGAGGAGCTGCTGAAGCAACCGAACGTGACCAACGTGCCGCTGATTCACGGTGTCACCAGTGGGGAGGGTTTGGTGTTTTATGGGCTGCTGCAGCAGCGGTTTGACGAGGTTACGACCAATCTGGCCAGCCTGCTGCCGCTCGATCTGGGCATACCGCGTGACTTTGCGCCGGCCGTAATCGAGGAGATACGTCAGTTCTACTTCCAGGACAAACCGATCGATCGGGATGTATTGGGCCACCTGCTCGATCTGGTGGGAGACGTTGGCTTTTACTTCCCGGTGTACGCAGCGGCGGAGCTGCATTCCCGCTTCCAGCAGGAGGCACCACTGTACTTCTATCGCTTCTCGTACGAGAGCGAGCTGAACCAGCTGCGCAAGCAGTTCAGCGTACCGGACGGTACACCGGGAGCGGCCCATGCCGACGAGTTGTCCTATCTGTTCAATGGCAGTCAAATTACTGTCCCGGTTGAGGCCGGCTCGGTGGCGGATCAGGGCCGCGACACTGCTCTGCCGTCTGTGGACCAACTTTGCCAAGTTTGGCCAGGCCTACGGCCGGAGGAGACGATGTTGGGCTTCCAGTGGGACCCGCGTGGCACCGACGCGTGCACGGGGAACCGTTCGTGCTGACGCGCCCTCGAAGCTGAACNGAGCAGGGTGCAAGTGTGGAAGAAATCCGAATGCAGGAAGCNCGGGATTACCAGTNTTTTTGGAGGGTCCCGACTGGCCCGAAACGGCTTTACAATTCCCCAAATCCTGGGGTTGGGCCGTATGAGAGGGCGGGGACGGAAGTTNCTCCAATTGTCGCATAATCTTCGTTCAATNNAGAGCGNTTAGAAANATTCCGTTAACACTTTTCAGGGCCAAACNGGGGGTACNCTGGTAGCANNACACGAAC]




>consensus_533#0
CCAGATCGCGCACGAGGTGAGGATCCAGTTCGGAGGACGCAATCATTCCGCAGCGTGGTG
AGGAGCTGCTGAAGCAACCGAACGTGACCAACGTGCCGCTGATTCACGGTGTCACCAGTG
GGGAGGGTTTGGTGTTTTATGGGCTGCTGCAGCAGCGGTTTGACGAGGTTACGACCAATC
TGGCCAGCCTGCTGCCGCTCGATCTGGGCATACCGCGTGACTTTGCGCCGGCCGTAATCG
AGGAGATACGTCAGTTCTACTTCCAGGACAAACCGATCGATCGGGATGTATTGGGCCACC
TGCTCGATCTGGTGGGAGACGTTGGCTTTTACTTCCCGGTGTACGCAGCGGCGGAGCTGC
ATTCCCGCTTCCAGCAGGAGGCACCACTGTACTTCTATCGCTTCTCGTACGAGAGCGAGC
TGAACCAGCTGCGCAAGCAGTTCAGCGTACCGGACGGTACACCGGGAGCGGCCCATGCCG
ACGAGTTGTCCTATCTGTTCAATGGCAGTCAAATTACTGTCCCGGTTGAGGCCGGCTCGG
TGGCGGATCAGGGCCGCGACACTGCTCTGCCGTCTGTGGACCAACTTTGCCAAGTTTGGC
CAGGCCTACGGCCGGAGGAGACGATGTTGGGCTTCCAGTGGGACCCGCGTGGCACCGACG
CGTGCACGGGGAACCGTTCGTGCTGACGCGCCCTCGAAGCTGAACNGAGCAGGGTGCAAG
TGTGGAAGAAATCCGAATGCAGGAAGCNCGGGATTACCAGTNTTTTTGGAGGGTCCCGAC
TGGCCCGAAACGGCTTTACAATTCCCCAAATCCTGGGGTTGGGCCGTATGAGAGGGCGGG
GACGGAAGTTNCTCCAATTGTCGCATAATCTTCGTTCAATNNAGAGCGNTTAGAAANATT
CCGTTAACACTTTTCAGGGCCAAACNGGGGGTACNCTGGTAGCANNACACGAAC

consensusID : consensus_533#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence

                              [AGAATCGCACGAGGTNAACGTAATCGAGGAGATACGTCAGTTCTACTTCCAGGACAAACCGATCGATCGGGATGGATTGGGCCACCTGCTCGATCTGGTGGGAGACGTTGGCTTTTACTTCCCGGTGTACGCAGCGGCGGAGCTGCATTCCCGCTTCCAGCANGAGGCACCACTGTACTTCTATCGCTTCTCGTACGAGAGCGAGCTGAACCAGCTGCGCAAGCAGGTTCAGCGTACCGGACGGTACACCGGGAGCGGGCCATGCCGACGAGTTGTCCTATCTGTTCAACTGGGCAGTCAAATTACTGTCCCGGTTGAGAGCACGGCATCGGTGGCGGATCAGGGGCCGCACACTGCTCTTGCAGTCTGTGGAACCAACTTTTGCCAAAGTTTTGGCAAGCCTACGCCCGGAAGGANGACCGATGTTGGTTCCAAGATGGGGAACCG]

[+] EMBL BX469280             [AGAATCGCACGAGGTNAACGTAATCGAGGAGATACGTCAGTTCTACTTCCAGGACAAACCGATCGATCGGGATGGATTGGGCCACCTGCTCGATCTGGTGGGAGACGTTGGCTTTTACTTCCCGGTGTACGCAGCGGCGGAGCTGCATTCCCGCTTCCAGCANGAGGCACCACTGTACTTCTATCGCTTCTCGTACGAGAGCGAGCTGAACCAGCTGCGCAAGCAGGTTCAGCGTACCGGACGGTACACCGGGAGCGGGCCATGCCGACGAGTTGTCCTATCTGTTCAACTGGGCAGTCAAATTACTGTCCCGGTTGAGAGCACGGCATCGGTGGCGGATCAGGGGCCGCACACTGCTCTTGCAGTCTGTGGAACCAACTTTTGCCAAAGTTTTGGCAAGCCTACGCCCGGAAGGANGACCGATGTTGGTTCCAAGATGGGGAACCG]




>consensus_533#1
AGAATCGCACGAGGTNAACGTAATCGAGGAGATACGTCAGTTCTACTTCCAGGACAAACC
GATCGATCGGGATGGATTGGGCCACCTGCTCGATCTGGTGGGAGACGTTGGCTTTTACTT
CCCGGTGTACGCAGCGGCGGAGCTGCATTCCCGCTTCCAGCANGAGGCACCACTGTACTT
CTATCGCTTCTCGTACGAGAGCGAGCTGAACCAGCTGCGCAAGCAGGTTCAGCGTACCGG
ACGGTACACCGGGAGCGGGCCATGCCGACGAGTTGTCCTATCTGTTCAACTGGGCAGTCA
AATTACTGTCCCGGTTGAGAGCACGGCATCGGTGGCGGATCAGGGGCCGCACACTGCTCT
TGCAGTCTGTGGAACCAACTTTTGCCAAAGTTTTGGCAAGCCTACGCCCGGAAGGANGAC
CGATGTTGGTTCCAAGATGGGGAACCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_533#0      CCAGATCGCGCACGAGGTGAGGATCCAGTTCGGAGGACGCAATCATTCCGCAGCGTGGTG 60
consensus_533#1      ------------------------------------------------------------
                                                                                 

consensus_533#0      AGGAGCTGCTGAAGCAACCGAACGTGACCAACGTGCCGCTGATTCACGGTGTCACCAGTG 120
consensus_533#1      ------------------------------------------------------------
                                                                                 

consensus_533#0      GGGAGGGTTTGGTGTTTTATGGGCTGCTGCAGCAGCGGTTTGACGAGGTTACGACCAATC 180
consensus_533#1      ------------------------------------------------------------
                                                                                 

consensus_533#0      TGGCCAGCCTGCTGCCGCTCGATCTGGGCATACCGCGTGACTTTGCGCCGGCCGTAATCG 240
consensus_533#1      ----------------------------AGAATCGCACGA------GGTNAACGTAATCG 26
                                                    * ***  **      *     ********

consensus_533#0      AGGAGATACGTCAGTTCTACTTCCAGGACAAACCGATCGATCGGGATGTATTGGGCCACC 300
consensus_533#1      AGGAGATACGTCAGTTCTACTTCCAGGACAAACCGATCGATCGGGATGGATTGGGCCACC 86
                     ************************************************ ***********

consensus_533#0      TGCTCGATCTGGTGGGAGACGTTGGCTTTTACTTCCCGGTGTACGCAGCGGCGGAGCTGC 360
consensus_533#1      TGCTCGATCTGGTGGGAGACGTTGGCTTTTACTTCCCGGTGTACGCAGCGGCGGAGCTGC 146
                     ************************************************************

consensus_533#0      ATTCCCGCTTCCAGCAGGAGGCACCACTGTACTTCTATCGCTTCTCGTACGAGAGCGAGC 420
consensus_533#1      ATTCCCGCTTCCAGCANGAGGCACCACTGTACTTCTATCGCTTCTCGTACGAGAGCGAGC 206
                     **************** *******************************************

consensus_533#0      TGAACCAGCTGCGCAAGCAG-TTCAGCGTACCGGACGGTACACCGGGAGCGGCCCATGCC 479
consensus_533#1      TGAACCAGCTGCGCAAGCAGGTTCAGCGTACCGGACGGTACACCGGGAGCGGGCCATGCC 266
                     ******************** ******************************* *******

consensus_533#0      GACGAGTTGTCCTATCTGTTCAAT--GGCAGTCAAATTACTGTCCCGGTTGAGGCC--GG 535
consensus_533#1      GACGAGTTGTCCTATCTGTTCAACTGGGCAGTCAAATTACTGTCCCGGTTGAGAGCACGG 326
                     ***********************   ***************************  *  **

consensus_533#0      C-TCGGTGGCGGATCAGGGCCGCGACACTGCTCT-GCCGTCTGTGGA-CCAACTTT-GCC 591
consensus_533#1      CATCGGTGGCGGATCAGGGGCCGCACACTGCTCTTGCAGTCTGTGGAACCAACTTTTGCC 386
                     * ***************** *   ********** ** ********* ******** ***

consensus_533#0      AA-GTTTGGCCAGGCCTACGGCCGGAGGAGA---CGATGTTGGGCTTCCAGTGGG-ACCC 646
consensus_533#1      AAAGTTTTGGCAAGCCTACGCCCGGAAGGANGACCGATGTTGGTTCCAAGATGGGGAACC 446
                     ** **** * ** ******* ***** *      *********        **** * **

consensus_533#0      GCGTGGCACCGACGCGTGCACGGGGAACCGTTCGTGCTGACGCGCCCTCGAAGCTGAACN 706
consensus_533#1      G----------------------------------------------------------- 447
                     *                                                           

consensus_533#0      GAGCAGGGTGCAAGTGTGGAAGAAATCCGAATGCAGGAAGCNCGGGATTACCAGTNTTTT 766
consensus_533#1      ------------------------------------------------------------
                                                                                 

consensus_533#0      TGGAGGGTCCCGACTGGCCCGAAACGGCTTTACAATTCCCCAAATCCTGGGGTTGGGCCG 826
consensus_533#1      ------------------------------------------------------------
                                                                                 

consensus_533#0      TATGAGAGGGCGGGGACGGAAGTTNCTCCAATTGTCGCATAATCTTCGTTCAATNNAGAG 886
consensus_533#1      ------------------------------------------------------------
                                                                                 

consensus_533#0      CGNTTAGAAANATTCCGTTAACACTTTTCAGGGCCAAACNGGGGGTACNCTGGTAGCANN 946
consensus_533#1      ------------------------------------------------------------
                                                                                 

consensus_533#0      ACACGAAC 954
consensus_533#1      --------