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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 894 fasta sequence
[CCGCCCACGCGTCCGGTAAACTGAGCGAAGGTTTGCCGGAAAAGTTGCAGAAAAAGGCAGATTTTAATC-GCCCCACCATGG-GTGGGGGGGTCCCGGGAGGATACCATAGCCCCAGC-GGCACCGGGGCAACTACAACAGTCCCATCATCCAACAGCACCTAAATCAAATGAACGTGCCAAACCAAATGGGCATGATGGGATTCAATCAAAACAGCATGATGAACAGCCCACAGATGCAGGGCGTACCGGGGCAAGGCAACCACGACATGGGGCTCAATCCGAGCATGATGCAGCAAAACCAACAGCAGCAGCAACCCGGCCAAGGAATGCAACCTAACCCTCAGCAGGTCGCGACAAACCAGCATCAGCCCGGTGCGAATCAAATGGTCGGTTTTTTTCCAACGCACCAAGCCGCCCAACCATCCCCCCAGAGGGGCATGCAGCAACAACAACAACAGCAGCAGCAACAGCAACAACAACAGCAGCAGCAGCAACAACAAAGCAGCAATGTCGGACCCGGCAACCCGATGAACAACCCCCAGTCACAGAACCAATCCGTCCCGCCGAATCAGCCCGGCGCAGGGACGGCGGTACAGCAGCAGCAGAAGGCCGAATTTAACCTGCTCTCGCTGTGCCGCATCGGGCAGGAAACGGTACAGGACACTGTGAGCCGCTTCCAGGAGGTGTTCGGCATACTGCGCTCCATTCAGCCCCCGAACGGGACGAACCAGGGCCAGCTGTCCAGCAACGACAAGAAGGCGAAGGTGCAGGAACAGTTCCGCACGATCCGGCTGCTGTTCAAGCGGCTGCGGCTGCTGTACGACAAGTGCAACAACAACTGCCAGCAGGGCATGGAGTACACGCACGTGGAGAGCTTGATACCGCTCAAGGGCGA]
[+] EMBL BM597199 [CCGCCCACGCGTCCGGTAAACTGAGCGAAGGTTTGCCGGAAAAGTTGCAGAAAAAGGCAGATTTTAATC GCCCCACCATGGAGTGGGGGGGTCCCGGGAGGATACCATAGCCCCAGCGGGCACCGGGGCAACTACAACAGTCCCATCATCCAACAGCACCTAAATCAAATGAACGTGCCAAACCAAATGGGCATGATGGGATTCAATCAAAACAGCATGATGAACAGCCCACAGATGCAGGGCGTACCGGGGCAAGGCAACCACGACATG ]
[+] EMBL CNS08QLZ [ AGGCAGATTTTAATCTGCCCCACCATGG CTGGCCAGTTCCCGGGAGGATACCAGAGCCCCAGC GGCACCGGGGCAACTACAACAGTCCCATCATCCAACAGCACCTAAATCAAATGAACGTGCCAAACCAAATGGGCATGATGGGATTCAATCAAAACAGCATGATGAACAGCCCACAGATGCAGGGCGTACCGGGGCAAGGCAACCAGGACATGGGGCTCAATCCGAGCATGATGCAGCAAAACCAACAGCAGCAGCAACCCGGCCAAGGAATGCAACCTAACCCTCAGCAGGTCGCGACAAACCAGCATCAGCCCGGTGCGAATCAAATGGTCGGTTTTTTTCCAACGCACCAAGCCGCCCAACCATCCCCCCAGAGGGGCATGCAGCAACAACAACAACAGCAGCAGCAACAGCAACAACAACAGCAGCAGCAGCAACAACAAAGCAGCAATGTCGGACCCGGCAACCCGATGAACAACCCCCAGTCACAGAACCAATCCGTCCCGCCGAATCAGCCCGGCGCAGGGACGGCGGTACAGCAGCAGCAGAAGGCCGAATTTAACCTGCTCTCGCTGTGCCGCATCGGGCAGGAAACGGTACAGGACACTGTGAGCCGCTTCCAGGAGGTGTTCGGCATACTGCGCTCCATTCAGCCCCCGAACGGGACGAACCAGGGCCAGCTGTCCAGCAACGACAAGAAGGCGAAGGTGCAGGAACAGTTCCGCACGATCCGGCTGCTGTTCAAGCGGCTGCGGCTGCTGTACGACAAGTGCAACAACAACTGCCAGCAGGGCATGGAGTACACGCACGTGGAGAGCTTGATACCGCTCAAGGGCGA]
[-] EMBL CNS08QM0 [ aTCCAACGCACCAAGCCGCCCAACCATCCCCCCAAATGGGCATGCAGCAACAACAACAACAGCAGCAGCAACAGCAACAACAACAGCAGCAGCAGCAACAACAAAGCAGCAATTTCGGACCCGGCAACCCGATGAACAACCCCCAGTCACAGAACCAATCCGTCCCGCCGAATCAGCCCGGCGCAGGGACGGCGGTACAGCAGCAGCAGAAGGCCGAATTTAACCTGTTCTCGCTGTGCCGCATCGGGCAGGAAACGGTACAGGACACTTTGAGCCGCTTCCAGGAGGTGTTCGGCATACTGCGCTCCATTCAGCCCCCGAACGGGACGAACCAGGGCCAGCTGTCCAGCAACGACAAGAAGGCGAAGGTGCAGGAACAGTTCCGCCCGATCCGGCTGCTGTTCAAGCGGCTGCGGCTGCTGTCCGACA ]
consensusID : consensus_5334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[CAAGAATTGCCCCGAGGTTNACATTGTGTGCTCAATCCTGGGCATGATGCAGCAAAACCAACAGCAGCAGCAACCCGGCCAATGGAATGCAACCTAACCCTCAGCAGTGTTGCTGACAAACCAGCATCAGCCCTGTGTGCTGAATCAAATGTGTCTGTGACATGAATCCAACTGCACCAATGCCTGCCCAACCATCCCCCCATGATGTGGCAATGCATGCAACAACAACAACATGCATGCATGCAACATGCAACAACAACATGCATGCATGCATGCAACAACAAATGCAGCAATGTCTGTGACCCTGTGCAACCCTGATGAACAACCCCCAGTCACATGAACCAATCCTGTCCCTGCCTGAATCAGCCCTGTGCTGCATGTNGACTGTGCTGTGTACATGCATGCATGCAGAATGTGCCTGAATTTAACCCTTGGCTCTCTCGCTGTGCCCGCCAATCNGGTGCAGTGAAACTGGGTAACATGTGACCATTTTGGTTGATGCCCCTGCGGTTTCACCATGGTGCATAGTCGGTTTGTNTACCTGTGCGCAATTACTTGCGTTAGCTCTCAATCCATAGCGGCCCCTGGAAACTGGGACCGAAC]
[+] EMBL AL931268 [CAAGAATTGCCCCGAGGTTNACATTGTGTGCTCAATCCTGGGCATGATGCAGCAAAACCAACAGCAGCAGCAACCCGGCCAATGGAATGCAACCTAACCCTCAGCAGTGTTGCTGACAAACCAGCATCAGCCCTGTGTGCTGAATCAAATGTGTCTGTGACATGAATCCAACTGCACCAATGCCTGCCCAACCATCCCCCCATGATGTGGCAATGCATGCAACAACAACAACATGCATGCATGCAACATGCAACAACAACATGCATGCATGCATGCAACAACAAATGCAGCAATGTCTGTGACCCTGTGCAACCCTGATGAACAACCCCCAGTCACATGAACCAATCCTGTCCCTGCCTGAATCAGCCCTGTGCTGCATGTNGACTGTGCTGTGTACATGCATGCATGCAGAATGTGCCTGAATTTAACCCTTGGCTCTCTCGCTGTGCCCGCCAATCNGGTGCAGTGAAACTGGGTAACATGTGACCATTTTGGTTGATGCCCCTGCGGTTTCACCATGGTGCATAGTCGGTTTGTNTACCTGTGCGCAATTACTTGCGTTAGCTCTCAATCCATAGCGGCCCCTGGAAACTGGGACCGAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5334#0 CCGCCCACGCGTCCGGTAAACTGAGCGAAGGTTTGCCGGAAAAGTTGCAGAAAAAGGCAG 60
consensus_5334#1 ------------------------------------------------------------
consensus_5334#0 ATTTTAATCGCCCCACCATGGGTGGGGGGGTCCCGGGAGGATACCATAGCCCCAGCGGCA 120
consensus_5334#1 ------------------------------------------------------------
consensus_5334#0 CCGGGGCAACTACAACAGTCCCATCATCCAACAGCACCTAAATCAAATGAACGTGCCAAA 180
consensus_5334#1 ------------------------------------------------------------
consensus_5334#0 CCAAATGGGCATGATGGGATTCAATCAAAACAGCATGATGAACAGCCCACAGATGCAGGG 240
consensus_5334#1 -------------------------------------------------------CAAGA 5
** *
consensus_5334#0 CGTACCGGGGCAAGGCAACCACGACATGGGGCTCAATCC-GAGCATGATGCAGCAAAACC 299
consensus_5334#1 ATTGCCC---CGAGGTTNACATTGTGTG---CTCAATCCTGGGCATGATGCAGCAAAACC 59
* ** * *** ** ** ******** * ******************
consensus_5334#0 AACAGCAGCAGCAACCCGGCCAA-GGAATGCAACCTAACCCTCAGCAG-GTCGC-GACAA 356
consensus_5334#1 AACAGCAGCAGCAACCCGGCCAATGGAATGCAACCTAACCCTCAGCAGTGTTGCTGACAA 119
*********************** ************************ ** ** *****
consensus_5334#0 ACCAGCATCAGCCCGGTGCG---AATCAAATG-GTCGGTTTTTT---TCCAAC-GCACCA 408
consensus_5334#1 ACCAGCATCAGCCCTGTGTGCTGAATCAAATGTGTCTGTGACATGAATCCAACTGCACCA 179
************** *** * ********* *** ** * ****** ******
consensus_5334#0 AG--CCGCCCAACCATCCCCCCAGAG---GGGCATGCA-GCAACAACAACAACA-GCA-G 460
consensus_5334#1 ATGCCTGCCCAACCATCCCCCCATGATGTGGCAATGCATGCAACAACAACAACATGCATG 239
* * ***************** ** ***** *************** *** *
consensus_5334#0 CA-GCAACA-GCAACAACAACA-GCA-GCA-GCA-GCAACAACAAA-GCAGCAATGTCGG 513
consensus_5334#1 CATGCAACATGCAACAACAACATGCATGCATGCATGCAACAACAAATGCAGCAATGTCTG 299
** ****** ************ *** *** *** *********** *********** *
consensus_5334#0 --ACCCGG--CAACCC-GATGAACAACCCCCAGTCACA-GAACCAATCC-GTCCCG--CC 564
consensus_5334#1 TGACCCTGTGCAACCCTGATGAACAACCCCCAGTCACATGAACCAATCCTGTCCCTGCCT 359
**** * ****** ********************* ********** ***** *
consensus_5334#0 GAATCAGCCCGGCGCAGGGACGGCGGTACAGCAGCAGCAGAAGGCCGAATTTAACCTGCT 624
consensus_5334#1 GAATCAGCCCTGTGCTGC-ATGTNGACTGTGCTGT-GTACATGCATGCATGCAGAATGTG 417
********** * ** * * * * ** * * * * * * ** * **
consensus_5334#0 CTCGCTGTGCCGCATCGGGCAGGAAACGGTACAGGACACTGTGAGCCGCTTCCAGGAGGT 684
consensus_5334#1 CCTGAATTTAACCCTTGGCTCTCTCGCTGTGCCCGCCAATCNGGTGCAGT----GAAACT 473
* * * * * ** * ** * * ** * * * * * * *
consensus_5334#0 GTTCGGCATACTGC-GCTCCATTCAGCCCCCGAACGGGACGAACCAGGGCCAGCTGTCCA 743
consensus_5334#1 GGGTAACATGTGACCATTTTGGTTGATGCCCCTGCGGTTTCACCATGGTGCA--TAGTCG 531
* *** * * * *** *** * * ** ** * *
consensus_5334#0 GCAACGACAAGAAGGCGAAGGTGCAGGAACAGTTCCGCACGATCCGGCTGCTGTTCAAGC 803
consensus_5334#1 GTTTGTNTACCTGTGCGCAATTACTTGCGTTAGCTCTCAATCCATAGCGGC--CCCTGGA 589
* * *** * * * * * ** ** ** * *
consensus_5334#0 GGCTGCGGCTGCTGTACGACAAGTGCAACAACAACTGCCAGCAGGGCATGGAGTACACGC 863
consensus_5334#1 AACTGGGACCGAAC---------------------------------------------- 603
*** * * *
consensus_5334#0 ACGTGGAGAGCTTGATACCGCTCAAGGGCGA 894
consensus_5334#1 -------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||