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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 886 fasta sequence
[ATGCAAGAATNGCCCGAGGNGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCGGCAANGAAGCCTGCGGAATACAGCGCCAGTCAGCTGCCCTGGTGCTGTCTTACGACCGGCCTGCTAACTGCCAACCACACCCATTGCCAACCTGTGAGCCTGCCCTGACCTGAATGCTGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATTTGTTTTTGTACATAGAATAGAAGTTTTCTCCGCTTACCATCCTCCGCCAATCTAATCTAAGTTAGTCGTATGGAGGCAGTTACGCAAAAGGCAGTCAAACGACGGTTCAATGATGGCTGGCCAGTCCAGATCATGGCTAACTGCTAATGGGCACTGCGTGCTCTGACGGAAGTGCTNGTGTGCTACTTAAACCCCTCACCGATTGGGGATAAGTGTGAAGTGCTTGTGCAATACTTTTATCTTTCTTGTTCTCTCTCTTTTTTTCATCCTTTAATGAATTTAACTGTCTGGTGTTTTCTTCACTTTCCACTTACTGGTTAAATCTGCGACACTAAAACCACACTCGTTTTGTTCCTGTTGAAGTTTGCAAAGCTGCTCAACGGTTCTTCAGCCAACGTGGCGAGTGATCGTGTCGGGACAGCTCGTCGTGTCGTTGCAAGCGTGAACATGTACATACGGTTACGATCAAGACGGAATATGGCGTATATGTATCTATGGAGGTGTTCCGGGATGACCTAACCGCACTTTCTCTACTTCCCATAAACTGTTCAACACTTCGGAGAGGGTTTTTGGTTTGTTTGTTTGCTTTTTTTTATAGAACTAATAGGAGTGTTGTTGTTCGTTGCTCCTCGCATCATAT]
[+] EMBL AL931373 [ATGCAAGAATNGCCCGAGGNGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCGGCAANGAAGCCTGCGGAATACAGCGCCAGTCAGCTGCCCTGGTGCTGTCTTACGACCGGCCTGCTAACTGCCAACCACACCCATTGCCAACCTGTGAGCCTGCCCTGACCTGAATGCTGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATTTGTTTTTGTACATAGAATAGAAGTTTTCTCCGCTTACCATCCTCCGCCAATCTAATCTAAGTTAGTCGTATGGAGGCAGTTACGCAAAAGGCAGTCAAACGACGGTTCAATGATGGCTGGCCAGTCCAGATCATGGCTAACTGCTAATGGGCACTGCGTGCTCTGACGGAAGTGCTNGTGTGCTACTTAAACCCCTCACCGATTGGGGATAAGTGTGAAGTGCTTGTGCAATACTTTTATCTTTCTTGTTCTCTCTCTTTTTTTCATCCTTTAATGAATTTAACTGTCTGGTGTTTTCTTCACTTTCCACTTACTGGTTAAATCTGCGACACTAAAACCACACTCGTTTTGTTCCTGTTGAAGTTTGCAAAGCTGCTCAACGGTTCTTCAGCCAACGTGGCGAGTGATCGTGTCGGGACAGCTCGTCGTGTCGTTGCAAGCGTGAACATGTACATACGGTTACGATCAAGACGGAATATGGCGTATATGTATCTATG ]
[+] EMBL BX611476 [ GCCC GACC GAATGC GGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATTTG TTTTGTACATAGAATAGAAGTTTTCTCCGCTTACCATCCTCCGCCAATCTAATCTAAGTTAGTCGTATGGAGGCAGTTACGCAAAAGGCAGTCAAACGACGGTTCAA GATGGC GGCCAGTCCAGATCA GGCTAACTGCTAATGGGCAC GCGTGCTCTGACGGAAG GC GGTG GCTACTTAAACCCCTCACCGATTGGGGATAAGTGTGAAG GCTTGTGCAATACTTTTATCTTTCTTGTT TTTTTTTTTTTCATCCTTTAATGAATTTAAC GTCTGGTGTTTTCTTCACTTTCCACTTACTGGTTAAATCTGCGACACTAAAACCACACTCG TTTGTTCCTGTTGAAGTTTGCAAAGCTGCTCAACGGTTCTTCAGCCAACGTGGCGAGTGATCGTGTCGGGACAGCTCGTCGTGTCG TG AAGCGTGAACATGTACATACGGTTACGAT AAGA GGAATATGGCGTATATGTATCTATGGAGGTGTTCCGGGATGACCTAACCGCACTTTCTCTACTTCCCATAAACTGTTCAACACTTCGGAGAGGGTTTTTGGTTTGTTTGTTTGCTTTTTTTTATAGAACTAATAGGAGTGTTGTTGTTCGTTGCTCCTCGCATCATAT]
consensusID : consensus_5339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 671 fasta sequence
[CCGGAACAACCACGGTAAGATGTCGCGCGGTGTCGCCTGCAAAACTGCGTCACCCTCGTTCGAGAACGGCATCACGAACGGGGCCGCCTGGTACCCGCTGACCGGCGGCATGCAGGACTTCAACTACGTCTGGCACGGCTGCATGGAGGTGACGCTCGAGGTGTCCTGCTGCAAGTTTCCGCCCGCGTACGAGCTGCGCAAGTACTGGGACGACAACCAGATGTCGATGATCAAGTTCCTGGCGGAGGCGCACCGGGGCGTCCAGGGCTTCATCATGGACCCGACCGGCAATCCGGTCGAGCGGGCGCAGCTCAAGATTAAGGGGCGCGACATCGGCTTCACCACCACCAAGTACGGCGAGTTCTGGCGCATCCTGCTGCCCGGCGTCTACAAGCTGGAGGTGTACGCGGACGGGTTCGTGCCGAAGGATGTGGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCGGCCAAGGAAGCCGCGGAATACAGCGCCAGTCAGCTGCCCGGTGCGTCTTACGACCGGCCGCTAACGCCAACCACACCCATTGCCAACCGTGAGCCTGCCCGACCGAATGCGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATTTGTTTTGTACATAGAATAGA]
[+] EMBL BM636828 [CCGGAACAACCACGGTAAGATGTCGCGCGGTGTCGCCTGCAAAACTGCGTCACCCTCGTTCGAGAACGGCATCACGAACGGGGCCGCCTGGTACCCGCTGACCGGCGGCATGCAGGACTTCAACTACGTCTGGCACGGCTGCATGGAGGTGACGCTCGAGGTGTCCTGCTGCAAGTTTCCGCCCGCGTACGAGCTGCGCAAGTACTGGGACGACAACCAGATGTCGATGATCAAGTTCCTGGCGGAGGCGCACCGGGGCGTCCAGGGCTTCATCATGGACCCGACCGGCAATCCGGTCGAGCGGGCGCAGCTCAAGATTAAGGGGCGCGACATCGGCTTCACCACCACCAAGTACGGCGAGTTCTGGCGCATCCTGCTGCCCGGCGTCTACAAGCTGGAGGTGTACGCGGACGGGTTCGTGCCGAAGGATGTGGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCGGCCAAGGAAGCCGCGGAATACAGCGCCAGTCAGCTGCCCGGTGCGTCTTACGACCGGCCGCTAACGCCAACCACACCCATTGCCAACCGTGAGCCTGCCCGACCGAATGCGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATTTGTTTTGTACATAGAATAGA]
[+] EMBL BM636843 [CCGGAACAACCACGGTAAGATGTCGCGCGGTGTCGCCTGCAAAACTGCGTCACCCTCGTTCGAGAACGGCATCACGAACGGGGCCGCCTGGTACCCGCTGACCGGCGGCATGCAGGACTTCAACTACGTCTGGCACGGCTGCATGGAGGTGACGCTCGAGGTGTCCTGCTGCAAGTTTCCGCCCGCGTACGAGCTGCGCAAGTACTGGGACGACAACCAGATGTCGATGATCAAGTTCCTGGCGGAGGCGCACCGGGGCGTCCAGGGCTTCATCATGGACCCGACCGGCAATCCGGTCGAGCGGGCGCAGCTCAAGATTAAGGGGCGCGACATCGGCTTCACCACCACCAAGTACGGCGAGTTCTGGCGCATCCTGCTGCCCGGCGTCTACAAGCTGGAGGTGTACGCGGACGGGTTCGTGCCGAAGGATGTGGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCGGCCAAGGAAGCCGCGGAATACAGCGCCAGTCAGCTGCCCGGTGCGTCTTACGACCGGCCGCTAACGCCAACCACACCCATTGCCAACCGTGAGCCTGCCCGACCGAATGCGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5339#0 ATGCAAGAATNGCCCGAGGNGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACG 60
consensus_5339#1 ------------------------------------------------------------
consensus_5339#0 TGACGCTACAGCCGGCAANGAAGCCTGCGGAATACAGCGCCAGTCAGCTGCCCTG--GTG 118
consensus_5339#1 --------------------------CCGGAA--CAACCACGGTAAGATGTCGCGCGGTG 32
***** ** * * ** ** ** * * ***
consensus_5339#0 CTGTCT-TACGACCGGCCTGCTAACTGCCAACCACACCCATTGCCAACCTGTGAGCCTGC 177
consensus_5339#1 TCGCCTGCAAAACTGCGTCACCCTCGTTCGAGAACGGC-ATCACGAACGGGGCCGCCTGG 91
* ** * ** * * * * * ** * ** * *** * *****
consensus_5339#0 CCTGACCTGAATGCTGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGC 237
consensus_5339#1 TACCCGCTGACCGGCGGCATGC-AGGACT---TCAACTACGTCTGGCACG-GCTGCATG- 145
**** * **** * **** *** * ** * ** *** *
consensus_5339#0 GAAGCGATTTGTTTTTGTACATAGAATAGAAGTTTTC-TCCGCTTACCATCCTCCGCCAA 296
consensus_5339#1 GAGGTGA--CGCTCGAGGTGTCCTGCTGCAAGTTTCCGCCCGCGTACGAGC-TGCGCAAG 202
** * ** * * * * ****** * **** *** * * * *** *
consensus_5339#0 TCTAATCTAAGTTAGTCGTATGGAGGCAGTTACGCAAAAGGCAGTCAAACGACGGTTCAA 356
consensus_5339#1 TACTGGG-ACGACAACCAGATGTCGATGATCAAGTTCCTGGCGGAGGCGCACCGGGGCGT 261
* * * * * *** * * * * *** * * *** *
consensus_5339#0 TGATGGCTGGCCAGTCCAGATCATGGCTAACTGCTAATGGGCACTGCGTGCTCTGACGGA 416
consensus_5339#1 CCAGGGCT--TCATCATGGACC----CGACCGGCAATCCGGTCGAGCGGGCGCAGCTCAA 315
* **** ** ** * * * * ** * ** *** ** * * *
consensus_5339#0 AGTGCTNGTGTGCTACTTAAACCCCTCACCGATTGGGGATAAGTGTGAAGTGCTTGTGCA 476
consensus_5339#1 GATTAAGGGGCGCGACATCGGCTTCACCACCACCAAGTACGGC----GAGTTCTGGCGCA 371
* * * ** ** * * * * * * * * *** ** * ***
consensus_5339#0 ATACTTTTATCTTTCTTGTTCTCTCTCTTTTTTTCATCCTTTAATGAATTTA-ACTGTCT 535
consensus_5339#1 -TCCTGCTGCCCGGCGTCTACAAGCTGGAGGT---GTACGCGGACGGGTTCGTGCCGAAG 427
* ** * * * * * * ** * * * * * ** * *
consensus_5339#0 GGTGTTTTCTTCACTTTC--CACTTACTGGTTAAATCTGCGACAC-TAAAACCACACTCG 592
consensus_5339#1 GATGTGGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCG 487
* *** ***** ** * * * **** ** * * * *** **
consensus_5339#0 TTTTGTTCCTGTTGAAGTTTGCAAAGCTGCTCAACGGTTCTTCAGCCAACGTGGCGAGTG 652
consensus_5339#1 GCCAAGGAA-GCCGCGGAATACAGCGCCAGTCAGCTGCCC---GGTGCGTCTTACGACCG 543
* * * * ** ** *** * * * * * *** *
consensus_5339#0 ATCGTGTCGGGACAGCTCGTCGTGTCGTTGCAAGCGTGAACATGTACATACGGTTACGAT 712
consensus_5339#1 GCCGC-TAACGCCAACCACACCCATTGC--CAACCGTGAGCCTGCCCGACCGAATGCGG- 599
** * * ** * * * * *** ***** * ** * ** * **
consensus_5339#0 CAAGACGGAATATGGCGTATATGTATCTATGGAGGTGTTCCGGGATGACCTAACCGCACT 772
consensus_5339#1 CAAACCAGGAT-CGGCTCATTTTTACCTCCTGAG----CGCAGCACG-CGAAGCGATTTG 653
*** * * ** *** ** * ** ** *** * * * * * * *
consensus_5339#0 TTCTCTACTTCCCATAAACTGTTCAACACTTCGGAGAGGGTTTTTGGTTTGTTTGTTTGC 832
consensus_5339#1 TTTTGTACATAGAATAGA------------------------------------------ 671
** * *** * *** *
consensus_5339#0 TTTTTTTTATAGAACTAATAGGAGTGTTGTTGTTCGTTGCTCCTCGCATCATAT 886
consensus_5339#1 ------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||