cluster # 5343

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Anopheles gambiae
cluster # 5343 cluster # 5343 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5343#0 length = 720 sequences # 1

consensus_5343#1 length = 671 sequences # 3

consensusID : consensus_5343#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 720
fasta sequence

                              [GCAGATNGCCGAGGNNATGTTGTGCGAGACATCACTGCTGTCGCTGATCTCGGGTGGACAGCCGCTGGCGCTCTCGGCCACCTACATACGGCGTNGGGCAAAGTGCAGAAGTGCGCCTGCCAACACCACAAGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCGTACCGGAAGCAGTACGAGGGTACGCTGGTGCTGCGGCCAACGTTACTGATCCGTTACGTCCAGATGGTGGTGCAGTTCGATCGTCAAGTGGAGCAACTCACGAATTACTTTGGAAGAATCAGCACCATCTGACCATCAGAGCTTTCACATCTGCCAATCTAACTGTACCCGTTACGCGCAGGCACAGTGGTCAAGATCCCGCGTAGAAGTTGTCTAACCACGTGGTTTCCCTCCGGCGGTCAGCCGTATCGAAGTCTAACGGCGTTACGATCTGTCCAGTGGGCAATTTAAGACCTTTGATCACGGAATTTCCGTGATCCATGGACGGGATCGGTAGTTGCCTGGGCTGCTGAGTACCACTGACCAGCCGGAAGTACACTCGAAAAATGGAACCACATGAACCGGCCATCAGTTCAACTCCTCCTGGCAGNGCGATTCGTACCTGGGTGTTGATCGTGTCGTCGGGCCTGCATGGGACGCGGTTATGAATCTCGTGGCCGAANAACGGTCGATCGGGCGTTGATAGAGGTCGTGTTCGATCAGC]

[+] EMBL AL931475             [GCAGATNGCCGAGGNNATGTTGTGCGAGACATCACTGCTGTCGCTGATCTCGGGTGGACAGCCGCTGGCGCTCTCGGCCACCTACATACGGCGTNGGGCAAAGTGCAGAAGTGCGCCTGCCAACACCACAAGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCGTACCGGAAGCAGTACGAGGGTACGCTGGTGCTGCGGCCAACGTTACTGATCCGTTACGTCCAGATGGTGGTGCAGTTCGATCGTCAAGTGGAGCAACTCACGAATTACTTTGGAAGAATCAGCACCATCTGACCATCAGAGCTTTCACATCTGCCAATCTAACTGTACCCGTTACGCGCAGGCACAGTGGTCAAGATCCCGCGTAGAAGTTGTCTAACCACGTGGTTTCCCTCCGGCGGTCAGCCGTATCGAAGTCTAACGGCGTTACGATCTGTCCAGTGGGCAATTTAAGACCTTTGATCACGGAATTTCCGTGATCCATGGACGGGATCGGTAGTTGCCTGGGCTGCTGAGTACCACTGACCAGCCGGAAGTACACTCGAAAAATGGAACCACATGAACCGGCCATCAGTTCAACTCCTCCTGGCAGNGCGATTCGTACCTGGGTGTTGATCGTGTCGTCGGGCCTGCATGGGACGCGGTTATGAATCTCGTGGCCGAANAACGGTCGATCGGGCGTTGATAGAGGTCGTGTTCGATCAGC]




>consensus_5343#0
GCAGATNGCCGAGGNNATGTTGTGCGAGACATCACTGCTGTCGCTGATCTCGGGTGGACA
GCCGCTGGCGCTCTCGGCCACCTACATACGGCGTNGGGCAAAGTGCAGAAGTGCGCCTGC
CAACACCACAAGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCGTACC
GGAAGCAGTACGAGGGTACGCTGGTGCTGCGGCCAACGTTACTGATCCGTTACGTCCAGA
TGGTGGTGCAGTTCGATCGTCAAGTGGAGCAACTCACGAATTACTTTGGAAGAATCAGCA
CCATCTGACCATCAGAGCTTTCACATCTGCCAATCTAACTGTACCCGTTACGCGCAGGCA
CAGTGGTCAAGATCCCGCGTAGAAGTTGTCTAACCACGTGGTTTCCCTCCGGCGGTCAGC
CGTATCGAAGTCTAACGGCGTTACGATCTGTCCAGTGGGCAATTTAAGACCTTTGATCAC
GGAATTTCCGTGATCCATGGACGGGATCGGTAGTTGCCTGGGCTGCTGAGTACCACTGAC
CAGCCGGAAGTACACTCGAAAAATGGAACCACATGAACCGGCCATCAGTTCAACTCCTCC
TGGCAGNGCGATTCGTACCTGGGTGTTGATCGTGTCGTCGGGCCTGCATGGGACGCGGTT
ATGAATCTCGTGGCCGAANAACGGTCGATCGGGCGTTGATAGAGGTCGTGTTCGATCAGC

consensusID : consensus_5343#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 671
fasta sequence

                              [CCGTGATCTTCGATCAGACAGGAGCTAGGAGCACACAGAAGAAGCAAATAAAAAAAAACAGATCAGTCAGTGAAAGATGTTGCGCGAGACATCACTGCTGTCGCTGATCCTCGGGTGGACAGCCGCTGGCGCTCTCGCCACCTACATACGCGTGGGGCAAAGTGCAGAAGTGCGCCTGCCAACGCCACAGGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCGTACCGGAAGCAGTACGAGGGTACGCTGGTGCTGCGGCCCAACGTTACGATCCGTTACGTCCAGATGGTGGTGCAGTTCGATCGTCAAGTGGAGCAACTCACGAATTACTTTGGAAGAATCAGCACCATCGACCATCAGAGCTTTCACATCGCCAATCTCACGTACCCGTTGCGCGCTGGCACAGTGGTCAAGATCCCGCTAGAAGTGTCCTACACCACCGGTTCCCCTCCGGCGGTCAGCCGAATCGAAGTCAACGGCGTTACGATCTGTCCTGTGGGCAATTTAAGACCTTTGATCAGGAATTTCCGTGATCCATGGACGGGATCGGTAGTGCCGGGCGCGAGTACCACGACCCAGCCGGAAGTACACTCGAAAAATGGAACCACAGAACCGGCCCATCAGTTCAACTCCTCCTGCCAGGCGATTCGTACCGGGG]

[+] EMBL BM611908             [CCGTGATCTTCGATCAGACAGGAGCTAGGAGCACACAGAAGAAGCAAATAAAAAAAAACAGATCAGTCAGTGAAAGATGTTGCGCGAGACATCACTGCTGTCGCTGATCCTCGGGTGGACAGCCGCTGGCGCTCTCGCCACCTACATACGCGTGGGGCAAAGTGCAGAAGTGCGCCTGCCAACGCCACAGGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCGTACCGGAAGCAGTACGAGGGTACGCTGGTGCTGCGGCCCAACGTTACGATCCGTTACGTCCAGATGGTGGTGCAGTTCGATCGTCAAGTGGAGCAACTCACGAATTACTTTGGAAGAATCAGCACCATCGACCATCAGAGCTTTCACATCGCCAATCTCACGTACCCGTTGCGCGCTGGCACAGTGGTCAAGATCCCGCTAGAAGTGTCCTACACCACCGGTTCCCCTCCGGCGGTCAGCCGAATCGAAGTCAACGGCGTTACGATCTGTCCTGTGGGCAATTTAAGACCTTTGATCAGGAATTTCCGTGATCCATGGACGGGATCGGTAGTGCCGGGCGCGAGTACCACGACCCAGCCGGAAGTACACTCGAAAAATGGAACCACAGAACCGGCCCATCAGTTCAACTCCTCCTGCCAGGCGATTCGTACCGGGG]
[+] EMBL BX604446             [            ATCAGACAGGAGCTAACAGCACACAGAAGAAGCAAAT       AACAGATCAGTCAGTCAAAGATGTTGCGCGAGACATCACTGCTGTCGCTGATCCTCGGGTGGACAGCCGCTGGCGCTCTCGCCACCTACATACGCGTGGGGCAAAGTGCAGAAGTGCGCGTGCCAACGCCACAGGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCGTACCGGAAGCAGTACGAGGGTACGCTGGTGCTGCGGCCCAACGTTACGATCCGTTACGTCCAGATGGTGGTGCAGTTCGATCGTCAAGTGGAGCAACTCACGAATTACTTTGGAAGAATCAGCACCATCGACCATCAGAGCTTTCACATCGCCAATCTAACGTACCCGTTGCGCGCTGGCACAGTGGTCAAGATCCCGCTAGAAGTGTCCTACACCACCGGTTCCCCTCCGGCGGTCAGCCGAATCGAAGTCAACGGCGTTACGATCTGTCCAGTGGGCAATTTAAGACCTTTG                                                                                                                                              ]
[+] EMBL BX606522             [               AGACAGGAGCTAGGAGCACACAGAAGAAGCAAATAAAAAAAAACAGATCAGTCAGTGAAAGATGTTGCGCGAGACATCACTGCTGTCGCTGATCCTCGGGTGGACAGCCGCTGGCGCTCTCGCCACCTACATACGCGTGGGGCAAAGTGCAGAAGTGCGCCTGCCAACGCCACAGGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]




>consensus_5343#1
CCGTGATCTTCGATCAGACAGGAGCTAGGAGCACACAGAAGAAGCAAATAAAAAAAAACA
GATCAGTCAGTGAAAGATGTTGCGCGAGACATCACTGCTGTCGCTGATCCTCGGGTGGAC
AGCCGCTGGCGCTCTCGCCACCTACATACGCGTGGGGCAAAGTGCAGAAGTGCGCCTGCC
AACGCCACAGGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCGTACCG
GAAGCAGTACGAGGGTACGCTGGTGCTGCGGCCCAACGTTACGATCCGTTACGTCCAGAT
GGTGGTGCAGTTCGATCGTCAAGTGGAGCAACTCACGAATTACTTTGGAAGAATCAGCAC
CATCGACCATCAGAGCTTTCACATCGCCAATCTCACGTACCCGTTGCGCGCTGGCACAGT
GGTCAAGATCCCGCTAGAAGTGTCCTACACCACCGGTTCCCCTCCGGCGGTCAGCCGAAT
CGAAGTCAACGGCGTTACGATCTGTCCTGTGGGCAATTTAAGACCTTTGATCAGGAATTT
CCGTGATCCATGGACGGGATCGGTAGTGCCGGGCGCGAGTACCACGACCCAGCCGGAAGT
ACACTCGAAAAATGGAACCACAGAACCGGCCCATCAGTTCAACTCCTCCTGCCAGGCGAT
TCGTACCGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5343#0      ---------------------------------------------------------GCA 3
consensus_5343#1      CCGTGATCTTCGATCAGACAGGAGCTAGGAGCACACAGAAGAAGCAAATAAAAAAAAACA 60
                                                                                **

consensus_5343#0      GATNGCCGAG---GNNATGTTGTGCGAGACATCACTGCTGTCGCTGATC-TCGGGTGGAC 59
consensus_5343#1      GATCAGTCAGTGAAAGATGTTGCGCGAGACATCACTGCTGTCGCTGATCCTCGGGTGGAC 120
                      ***     **      ****** ************************** **********

consensus_5343#0      AGCCGCTGGCGCTCTCGGCCACCTACATACGGCGTNGGGCAAAGTGCAGAAGTGCGCCTG 119
consensus_5343#1      AGCCGCTGGCGCTCTCG-CCACCTACATACG-CGTGGGGCAAAGTGCAGAAGTGCGCCTG 178
                      ***************** ************* *** ************************

consensus_5343#0      CCAACACCACAAGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCGTAC 179
consensus_5343#1      CCAACGCCACAGGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCGTAC 238
                      ***** ***** ************************************************

consensus_5343#0      CGGAAGCAGTACGAGGGTACGCTGGTGCTGCGGCC-AACGTTACTGATCCGTTACGTCCA 238
consensus_5343#1      CGGAAGCAGTACGAGGGTACGCTGGTGCTGCGGCCCAACGTTAC-GATCCGTTACGTCCA 297
                      *********************************** ******** ***************

consensus_5343#0      GATGGTGGTGCAGTTCGATCGTCAAGTGGAGCAACTCACGAATTACTTTGGAAGAATCAG 298
consensus_5343#1      GATGGTGGTGCAGTTCGATCGTCAAGTGGAGCAACTCACGAATTACTTTGGAAGAATCAG 357
                      ************************************************************

consensus_5343#0      CACCATCTGACCATCAGAGCTTTCACATCTGCCAATCTAACTGTACCCGTTACGCGCAGG 358
consensus_5343#1      CACCATC-GACCATCAGAGCTTTCACATC-GCCAATCTCAC-GTACCCGTTGCGCGCTGG 414
                      ******* ********************* ******** ** ********* ***** **

consensus_5343#0      CACAGTGGTCAAGATCCCGCGTAGAAGTTGTCTA-ACCACGTGGTTTCCCTCCGGCGGTC 417
consensus_5343#1      CACAGTGGTCAAGATCCCGC-TAGAAGTGTCCTACACCAC-CGGTTCCCCTCCGGCGGTC 472
                      ******************** *******   *** *****  **** *************

consensus_5343#0      AGCCGTATCGAAGTCTAACGGCGTTACGATCTGTCCAGTGGGCAATTTAAGACCTTTGAT 477
consensus_5343#1      AGCCGAATCGAAGTC-AACGGCGTTACGATCTGTCCTGTGGGCAATTTAAGACCTTTGAT 531
                      ***** ********* ******************** ***********************

consensus_5343#0      CACGGAATTTCCGTGATCCATGGACGGGATCGGTAGTTGCCTGGGCTGCTGAGTACCACT 537
consensus_5343#1      CA-GGAATTTCCGTGATCCATGGACGGGATCGGTAGTG--CCGGGC--GCGAGTACCACG 586
                      ** **********************************   * ****    ********* 

consensus_5343#0      GACCAGCCGGAAGTACACTCGAAAAATGGAACCACATGAACCGGCCATCAGTTCAACTCC 597
consensus_5343#1      ACCCAGCCGGAAGTACACTCGAAAAATGGAACCACAGAACCGGCCCATCAGTTCAACTCC 646
                        **********************************  * * * ****************

consensus_5343#0      TCCTGGCAGNGCGATTCGTACCTGGGTGTTGATCGTGTCGTCGGGCCTGCATGGGACGCG 657
consensus_5343#1      TCCTGCCAGG-CGATTCGTACCGGGG---------------------------------- 671
                      ***** ***  *********** ***                                  

consensus_5343#0      GTTATGAATCTCGTGGCCGAANAACGGTCGATCGGGCGTTGATAGAGGTCGTGTTCGATC 717
consensus_5343#1      ------------------------------------------------------------
                                                                                  

consensus_5343#0      AGC 720
consensus_5343#1      ---