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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1481 fasta sequence
[GGCAAAGAATCCCGCACGAGGTTAACACATGAACGGTATAGAGGCCATGATGGTGACTTTCTATGACCCCGGTTTAGATCCGTACTGCTGTTTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGACAGACGCAAAGTCATGAAACATAAAGACTGTTTCTTAGAAACGTCGAACGTTTCGAGCACACAGATCAGTCGATGTCAAAGCNACGGANTCGCCGGTGTTTTCAGCGGGAGGGGCAAGACTAGGAGAGGGCGCCGAACAGACGGCGTTTNNACACGATCCGCCTGGNGCTGTACGGCNCNTGTGACGCCCCTTANTTNCTCTTGNGTCCCTACCCCANCGCCCCGCGTTCCGCACTNNGGGGGNNCCCACCCCTCGGNCGGAGGCCNGCAGTCNCGGNCTGCCTCGGCACTGCCNGCCGATANGCGTTAGTATTGCCCNCGACATCGAAAGANNACATNGCGNAAAGGGTAGGATNAGNTACGGGGGCGCGNGNATCNGCGACGTTCAGNCCNGTGCGGAACAGNACATGCCGNAGCACCACCNCGACGGCCCCACGGCCCACAGCGGCAGCGNCCGGACCTTCACCGCGGGCNTNACGAAGCTNTNGCNGCACCTCGGTCTGCNCCGACGCAGGACGACNAGGCNAGCATGGGGGGCCATACGCGAGGCANTCNGCACAGAGGCGGCGCNGTGTNGCTGGGACGNTACGATAGNGNGGTGNGCNNNCTCCGGGNGGCANCCGTNCCCGGGNCCACACACNGATCGTNGCTAGCAGTAACNCGCTANAGGGAGGNAGGNGGGGCGAGGTGCGGNANTGCCGAGAAGGCGAACAGTAAANCGCGAGANCCGGCGNGNAGGTGATCGGACCANGNCCCACTNGCGNGCNGGAACCAGTNNAAANCGACCAGNAGAACCCTNCGACCNGGCNAGTCNACGTTGGGANACAGGCACGTCAGAGGNNACCGCACAGCCGGACGCAGCGCCNGCAGNCCCCNAGGCCCCCGAGGAGCCGGGGCNGCNGCCGACACNNTNCGCTACNANANNTCGGAGCANCGGCGANGGCCNGTCGAGCAAANCGNGNCNGCCNNGCCTCGNCCGCTAGGCNCNCCGGCAGGCGAGGGGCAGNNNCGNNAGGNAGTNTGACNATNCTGCGCNTNGANANTGNGCTCAANGTAGCGTTTCCAATGCGACNCNNNTTGCATNTGTTAAGANGGNGANGGTGCGTGAANNACCNGAGNAAACNCACGAACNGGGNAGACNCACNGCCGGGCNANACACACCGCCGCGAGNGANGACGANCTGCCNNGATCGCCAGCCNACNCCGCNCCTGGAACGNGGNCACGAGNCNNGGCCCCGNGNNGCNGGCCNNCCNCGGCCGCGGGNCTGAGCAGCAAANNAGNNAGCNANNATACGATCAACGACNANCGGACGCCNAGTCGANNNCNGCCGACCCTAAANCCANNAGNCGAANG]
[+] EMBL BX466119 [GGCAAAGAATCCCGCACGAGGTTAACACATGAACGGTATAGAGGCCATGATGGTGACTTTCTATGACCCCGGTTTAGATCCGTACTGCTGTTTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGACAGACGCAAAGTCATGAAACATAAAGACTGTTTCTTAGAAACGTCGAACGTTTCGAGCACACAGATCAGTCGATGTCAAAGCNACGGANTCGCCGGTGTTTTCAGCGGGAGGGGCAAGACTAGGAGAGGGCGCCGAACAGACGGCGTTTNNACACGATCCGCCTGGNGCTGTACGGCNCNTGTGACGCCCCTTANTTNCTCTTGNGTCCCTACCCCANCGCCCCGCGTTCCGCACTNNGGGGGNNCCCACCCCTCGGNCGGAGGCCNGCAGTCNCGGNCTGCCTCGGCACTGCCNGCCGATANGCGTTAGTATTGCCCNCGACATCGAAAGANNACATNGCGNAAAGGGTAGGATNAGNTACGGGGGCGCGNGNATCNGCGACGTTCAGNCCNGTGCGGAACAGNACATGCCGNAGCACCACCNCGACGGCCCCACGGCCCACAGCGGCAGCGNCCGGACCTTCACCGCGGGCNTNACGAAGCTNTNGCNGCACCTCGGTCTGCNCCGACGCAGGACGACNAGGCNAGCATGGGGGGCCATACGCGAGGCANTCNGCACAGAGGCGGCGCNGTGTNGCTGGGACGNTACGATAGNGNGGTGNGCNNNCTCCGGGNGGCANCCGTNCCCGGGNCCACACACNGATCGTNGCTAGCAGTAACNCGCTANAGGGAGGNAGGNGGGGCGAGGTGCGGNANTGCCGAGAAGGCGAACAGTAAANCGCGAGANCCGGCGNGNAGGTGATCGGACCANGNCCCACTNGCGNGCNGGAACCAGTNNAAANCGACCAGNAGAACCCTNCGACCNGGCNAGTCNACGTTGGGANACAGGCACGTCAGAGGNNACCGCACAGCCGGACGCAGCGCCNGCAGNCCCCNAGGCCCCCGAGGAGCCGGGGCNGCNGCCGACACNNTNCGCTACNANANNTCGGAGCANCGGCGANGGCCNGTCGAGCAAANCGNGNCNGCCNNGCCTCGNCCGCTAGGCNCNCCGGCAGGCGAGGGGCAGNNNCGNNAGGNAGTNTGACNATNCTGCGCNTNGANANTGNGCTCAANGTAGCGTTTCCAATGCGACNCNNNTTGCATNTGTTAAGANGGNGANGGTGCGTGAANNACCNGAGNAAACNCACGAACNGGGNAGACNCACNGCCGGGCNANACACACCGCCGCGAGNGANGACGANCTGCCNNGATCGCCAGCCNACNCCGCNCCTGGAACGNGGNCACGAGNCNNGGCCCCGNGNNGCNGGCCNNCCNCGGCCGCGGGNCTGAGCAGCAAANNAGNNAGCNANNATACGATCAACGACNANCGGACGCCNAGTCGANNNCNGCCGACCCTAAANCCANNAGNCGAANG]
consensusID : consensus_5352#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 830 fasta sequence
[CCCCGGCCCACGTGAGAAAAGCGTCATCGTCCCTCCCCATATATAGCCGTCTTAAAAAAAAACAAAAACAGCTATCCTCAAGTAAGATTAAATAATATCTGTGGTAGAGAGAATGAACACATGAACGGTATAGAGGCGATGATGGTGACTTTCTATGCCCCGGTTTAGATCCGTACTGCTGTTTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGCCAGACGCAAATCATGAAACATAAAGACTTTTCTTAGAAACTCGAACTTTCGAGCACACGATCATCATTCAAACACGATCGCGGTTTAGGGAGGGCAAGTAGAGAGCGCGAAACGCGTCAAACGAACGTGGGTGTTTGTTTTGAGCATATTATATGATACTACAAAGCAAATGAGATAGGAACCACCTAGGGAGAGAGAGGGTGTGGGAAGCGTGTGTGTGCAGTGAAATTATGTATAGGGTAAAATATCTGTATCAAACAAAAAACCACACGAAGATCAGGAAATTTGGAGGGAAACATATAGAACTTGATAGTGAGAAATGCATATACACACATGCACCGATAACACACAATTGCGTAGACAGAAAGGACATATTATATATACACCCTTCCCTCCCCTCCAACCACTAAACAAGGTACTATATATACATATACACACAGCAGCATACACACTATAAATTATATAAAATTATATACATTCGTCGTGTTGGAAGAAACTACCATTTTATTCAAAGTACCAGCAAATGGTGTGGGGTCGACGAAGACGACAATGGAATCGTGCAAAAACTAGGGGACTTGTAACTTGGCTGCTTTTAAGAAGAAACAAACACC]
[+] EMBL BX616934 [CCCCGGCCCACGTGAGAAAAGCGTCATCGTCCCTCCCCATATATAGCCGTCTTAAAAAAAAACAAAAACAGCTATCCTCAAGTAAGATTAAATAATATCTGTGGTAGAGAGAATGAACACATGAACGGTATAGAGGCGATGATGGTGACTTTCTATGCCCCGGTTTAGATCCGTACTGCTGTTTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGCCAGACGCAAATCATGAAACATAAAGACTTTTCTTAGAAACTCGAACTTTCGAGCACACGATCATCATTCAAACACGATCGCGGTTTAGGGAGGGCAAGTAGAGAGCGCGAAACGCGTCAAACGAACGTGGGTGTTTGTTTTGAGCATATTATATGATACTACAAAGCAAATGAGATAGGAACCACCTAGGGAGAGAGAGGGTGTGGGAAGCGTGTGTGTGCAGTGAAATTATGTATAGGGTAAAATATCTGTATCAAACAAAAAACCACACGAAGATCAGGAAATTTGGAGGGAAACATATAGAACTTGATAGTGAGAAATGCATATACACACATGCACCGATAACACACAATTGCGTAGACAGAAAGGACATATTATATATACACCCTTCCCTCCCCTCCAACCACTAAACAAGGTACTATATATACATATACACACAGCAGCATACACACTATAAATTATATAAAATTATATACATTCGTCGTGTTGGAAGAAACTACCATTTTATTCAAAGTACCAGCAAATGGTGTGGGGTCGACGAAGACGACAATGGAATCGTGCAAAAACTAGGGGACTTGTAACTTGGCTGCTTTTAAGAAGAAACAAACACC]
[+] EMBL BM650703 [ ccgGTCCCTCCCCATATATAGCCGTCTTAAAAAAAAACAAAAACAGCTATCCTCAAGTAAGATTAAATAATATCTGTGGTAGAGAGAATGAACACATGAACGGTATAGAGGCGATGATGGTGACTTTCTATGCCCCGGTTTAGATCCGTACTGCTGTTTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGCCAGACGCAAATCATGAAACATAAAGACTTTTCTTAGAAACTCGAACTTTCGAGCACACGATCATCATTCAAACACGATCGCGGTTTAGGGAGGGCAAGTAGAGAGCGCGAAACGCGTCAAACGAACGTGGGTGTTTGTTTTGAGCATATTATATGATACTACAAAGCAAATGAGATAGGAACCACCTAGGGAGAGAGAGGGTGTGGGAAGCGTGTGTGTGCAGTGAAATTATGTATAGGGTAAAATATCTGTATCAAACAAAAAACCACACGAAGATCAGGAAATTTGGAGGGAAACATATAGAACTTGATAGTGAGAAATGCATATACACACATGCACCGATAACACACAATTGCGTAGACAGAAAGGACATATTATATATACACCCTTCCCTCCCCTCCAACCA ]
consensusID : consensus_5352#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence
[CCAAGAATTCGGCACGATGGAAGATTAATAATATCTGTGGTAGAGAGAATGAACACATGAACGGTATAGAGGCGATGATGGTGACTTTCTATGCCCCGGTTTAGATCCGTACTGCTGTTTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGCCAGACGCAAATCATGAAACATAAAGACTTTTCTTAGAAACTCGAACTTTCGAGCACACGATCATCATTCAAACACGATCGCGGTTTAGGGAGGGCAAGTAGAGAGCGCGAAACGCGTCAAACGAACGTGGGTGTTTGTTTTGAGCATATTATATGATACTACAAAGCAAATGAGATAGGAACCACCTAGGGAGAGAGAGGGTGTGGGAAGCGTGTGTGTGCAGTGAAATTATGTATAGGGTAAAATATCTGTATCAAACAAAAAACCACACGAAGATCAGGAAATTTTGGAGGGAAACATATAGAACTTGATAGTGAGAAATGCATATACACACATGCACCGATACACACAATTGCGTAGACGAAAGGACATATTATATATACACCCTTCCCTCCCCTCCAAC]
[+] EMBL BX467908 [CCAAGAATTCGGCACGATGGAAGATTAATAATATCTGTGGTAGAGAGAATGAACACATGAACGGTATAGAGGCGATGATGGTGACTTTCTATGCCCCGGTTTAGATCCGTACTGCTGTTTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGCCAGACGCAAATCATGAAACATAAAGACTTTTCTTAGAAACTCGAACTTTCGAGCACACGATCATCATTCAAACACGATCGCGGTTTAGGGAGGGCAAGTAGAGAGCGCGAAACGCGTCAAACGAACGTGGGTGTTTGTTTTGAGCATATTATATGATACTACAAAGCAAATGAGATAGGAACCACCTAGGGAGAGAGAGGGTGTGGGAAGCGTGTGTGTGCAGTGAAATTATGTATAGGGTAAAATATCTGTATCAAACAAAAAACCACACGAAGATCAGGAAATTTTGGAGGGAAACATATAGAACTTGATAGTGAGAAATGCATATACACACATGCACCGATACACACAATTGCGTAGACGAAAGGACATATTATATATACACCCTTCCCTCCCCTCCAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5352#1 ------------------------------------------------------------
consensus_5352#2 ------------------------------------------------------------
consensus_5352#0 GGCAAAGAATCCCGCACGAGGTTAACACATGAACGGTATAGAGGCCATGATGGTGACTTT 60
consensus_5352#1 ------------------------------------------------------------
consensus_5352#2 ------------------------------------------------------------
consensus_5352#0 CTATGACCCCGGTTTAGATCCGTACTGCTGTTTGTTGCCATCCTCTCAGGCATCATAAGG 120
consensus_5352#1 ------------------------------------------------------------
consensus_5352#2 ------------------------------------------------------------
consensus_5352#0 CAGGCAGACAGACGCAAAGTCATGAAACATAAAGACTGTTTCTTAGAAACGTCGAACGTT 180
consensus_5352#1 ------------------------------------------------------------
consensus_5352#2 ------------------------------------------------------------
consensus_5352#0 TCGAGCACACAGATCAGTCGATGTCAAAGCNACGGANTCGCCGGTGTTTTCAGCGGGAGG 240
consensus_5352#1 ------------------------------------------------------------
consensus_5352#2 ------------------------------------------------------------
consensus_5352#0 GGCAAGACTAGGAGAGGGCGCCGAACAGACGGCGTTTNNACACGATCCGCCTGGNGCTGT 300
consensus_5352#1 --------------------------------------------------CCCCGGCCCA 10
consensus_5352#2 ------------------------------------------------------------
consensus_5352#0 ACGGCNCNTGTGACGCCCCTTANTTNCTCTTGNGTCCCTACCCCANCGCCCCGCGTTCCG 360
consensus_5352#1 CGTGAGAAAAGCGTCATCGTCCCTCCCCATATATAGCCGTCTTAAAAAAAAACAAAAACA 70
consensus_5352#2 ---------------------------------------------------CCAAGAAT- 8
consensus_5352#0 CACTNNGGGGGNNCCCACCCCTCGGNCGGAGGCCNGCAGTCNCGGNCTGCCTCGGCACTG 420
* *
consensus_5352#1 GCTATCCTCAAG---TAAGATTAAATA--ATATCTGTGGTAGAGAGAATGAACA---CAT 122
consensus_5352#2 -TCGGCACGATG---GAAGATTAA-TA--ATATCTGTGGTAGAGAGAATGAACA---CAT 58
consensus_5352#0 CCNGCCGATANGCGTTAGTATTGCCCNCGACATCGAAAGANNACATNGCGNAAAGGGTAG 480
* * * * *** * *** * * * * * * *
consensus_5352#1 GAAC-GGTATAGAGGCGATGATGGTGACTTTCTATGCCCCGGTTTAGATCCGTAC-TGCT 180
consensus_5352#2 GAAC-GGTATAGAGGCGATGATGGTGACTTTCTATGCCCCGGTTTAGATCCGTAC-TGCT 116
consensus_5352#0 GATNAGNTACGGGGGCGCGNGNATCNGCGACGTTCAGNCCNGTGCGGAACAGNACATGCC 540
** * ** * **** * * ** ** ** * * ** ***
consensus_5352#1 GT----TTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGCCAGACGCAAATCATGAA 236
consensus_5352#2 GT----TTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGCCAGACGCAAATCATGAA 172
consensus_5352#0 GNAGCACCACCNCGACGGCCCCACGGCCCACAGCGGCAGCGNCCGGACCTTCACCGCGGG 600
* * * * ** * ** * * ** ** *** * * *
consensus_5352#1 ACATAAAGACTTTTCTTAGAAACTCGAACT-TTCGAGCACACGATCATCATTCAAACACG 295
consensus_5352#2 ACATAAAGACTTTTCTTAGAAACTCGAACT-TTCGAGCACACGATCATCATTCAAACACG 231
consensus_5352#0 CNTNACGAAGCTNTNGCNGCACCTCGGTCTGCNCCGACGCAGGACGACNAGGCNAGCATG 660
* * * * * * **** ** * * ** ** * * * * ** *
consensus_5352#1 A----TCGCGGTTTAGGGAG--GGCAAGTAGAGAGCGCGAAACGCGTCAAACGA------ 343
consensus_5352#2 A----TCGCGGTTTAGGGAG--GGCAAGTAGAGAGCGCGAAACGCGTCAAACGA------ 279
consensus_5352#0 GGGGGCCATACGCGAGGCANTCNGCACAGAGGCGGCGCNGTGTNGCTGGGACGNTACGAT 720
* *** * *** ** **** * ***
consensus_5352#1 -ACGTGG-GTGTTTGTTTTGAGC----ATATTATATGATACTACAAAGCAAATGAGAT-- 395
consensus_5352#2 -ACGTGG-GTGTTTGTTTTGAGC----ATATTATATGATACTACAAAGCAAATGAGAT-- 331
consensus_5352#0 AGNGNGGTGNGCNNNCTCCGGGNGGCANCCGTNCCCGGGNCCACACACNGATCGTNGCTA 780
* ** * * * * * * * * *** * * *
consensus_5352#1 --AGGAACCACCTAGGGAGAGAGAGGGTGTGGGAAGCGTGTGTGTGCAGTGAAATTATGT 453
consensus_5352#2 --AGGAACCACCTAGGGAGAGAGAGGGTGTGGGAAGCGTGTGTGTGCAGTGAAATTATGT 389
consensus_5352#0 GCAGTAACNCGCTANAGGGAGGNAGGNGGGGCGAGGTGCGGNANTGCCGAGAAGGCGAAC 840
** *** *** * *** *** * * ** * * * *** * ***
consensus_5352#1 A-TAGGGTAAAATATCTGTATCAAACAAAAAACCACACGAAGATCAGGAAATTT-GGAGG 511
consensus_5352#2 A-TAGGGTAAAATATCTGTATCAAACAAAAAACCACACGAAGATCAGGAAATTTTGGAGG 448
consensus_5352#0 AGTAAANCGCGAGANCCGG--CGNGNAGGTGATCGGACCANGNCCC---ACTNGCGNGCN 895
* ** * * * * * * * * ** * * * * * *
consensus_5352#1 GAAACATATAGAACTTGATAGTGAGAAATGCATATACACACATG-CACCGATAACACACA 570
consensus_5352#2 GAAACATATAGAACTTGATAGTGAGAAATGCATATACACACATG-CACCGATA-CACACA 506
consensus_5352#0 GGAACCAGTNNAAANCGACCAGNAGAACCCTNCGACCNGGCNAGTCNACGTTGGGANACA 955
* *** * ** ** **** * * * * ** * * ***
consensus_5352#1 ATTGCGTAGACAGAAAGGACATATTATATATACACCCTTCCCTCCCCTCCAACCACTAAA 630
consensus_5352#2 ATTGCGTAGAC-GAAAGGACATATTATATATACACCCTTCCCTCCCCTCCAAC------- 558
consensus_5352#0 GGCACGTCAGAGGNNACCGCACAGC-CGGACGCAGCGCCNGCAGNCCCCNAGGCCCCCGA 1014
*** * * ** * * ** * * ** * *
consensus_5352#1 CAAGGTACTATATATACATATACACACAGCAGCATACACACTATAAATTATATAAAATTA 690
consensus_5352#2 ------------------------------------------------------------
consensus_5352#0 GGAGCCGGGGCNGCNGCCGACACNNTNCGCTACNANANNTCGGAGCANCGGCGANGGCCN 1074
consensus_5352#1 TATACATTCGTCGTGTTGGAAGAAACTACCATTTTATTCAAAGTACCAGCAAATGGTGTG 750
consensus_5352#2 ------------------------------------------------------------
consensus_5352#0 GTCGAGCAAANCGNGNCNGCCNNGCCTCGNCCGCTAGGCNCNCCGGCAGGCGA-GGGGCA 1133
consensus_5352#1 GGGTCGACGAAGACGACAATGGAATCGTGCAAAAACTAGGGGACTTGTAACTTGGCTGCT 810
consensus_5352#2 ------------------------------------------------------------
consensus_5352#0 GNNNCGNNAGGNAGTNTGACNATNCTGCGCNTNGAN-ANTGNGCTCAANGTAGCGTTTCC 1192
consensus_5352#1 TTTAAGAAGAAACAAACACC---------------------------------------- 830
consensus_5352#2 ------------------------------------------------------------
consensus_5352#0 AATGCGACNCNNNTTGCATNTGTTAAGANGGNGANGGTGCGTGAANNACCNGAGNAAACN 1252
consensus_5352#1 ------------------------------------------------------------
consensus_5352#2 ------------------------------------------------------------
consensus_5352#0 CACGAACNGGGNAGACNCACNGCCGGGCNANACACACCGCCGCGAGNGANGACGANCTGC 1312
consensus_5352#1 ------------------------------------------------------------
consensus_5352#2 ------------------------------------------------------------
consensus_5352#0 CNNGATCGCCAGCCNACNCCGCNCCTGGAACGNGGNCACGAGNCNNGGCCCCGNGNNGCN 1372
consensus_5352#1 ------------------------------------------------------------
consensus_5352#2 ------------------------------------------------------------
consensus_5352#0 GGCCNNCCNCGGCCGCGGGNCTGAGCAGCAAANNAGNNAGCNANNATACGATCAACGACN 1432
consensus_5352#1 -------------------------------------------------
consensus_5352#2 -------------------------------------------------
consensus_5352#0 ANCGGACGCCNAGTCGANNNCNGCCGACCCTAAANCCANNAGNCGAANG 1481
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||