cluster # 5354

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Anopheles gambiae
cluster # 5354 cluster # 5354 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5354#0 length = 653 sequences # 1
consensus_5354#1 length = 605 sequences # 1

consensus_5354#2 length = 600 sequences # 1
consensus_5354#3 length = 276 sequences # 1

consensusID : consensus_5354#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 653
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCCAAATGGGGAAACTGCTGGCACATTAACTAAGACGAACTTGACGAATCACGAACGCTGTTCAGTTTAGTGAATTTAAACGATTCTTGACACACACACAACAAAAAACGGTTCCTTTTTTAATATGACTGACCAAGGATCAGCAGCAGTGTTTGGTGCGCAACCATAATTTAGCTAGGATGGGTGGGCTTTTGCTTCGTTAAATTATAATGCAAATTGAGCGAAAACGTAAGGGTTTACTGTGGGGAAAAAGGGGATAAAAACAATGTTTGAGATTACTGTCCCGAATGGAGGAGTCCTGCTTGTGAACACTTGCCATATCCTTCTTATCGTTGGCTCAAAAGAGGACACAAACAAACACACACACATACACATACACGCTTAACACGCATCCAATTCCATCCTCGATGTGTTATTTGTAACCGGGAAAGGTCGCGTTATGGAACTTCTTCTTTAAAGCTTTTGAGTGAGATTGACAGTTGTACAGTACAGAAGAAAAAAAAACAAACAACAAACCCAAAACACATACACACTCACAACGTGTTGGGATTAGCAGTCGAAATAGGCAAACATACACTAACAAACAAAAAAAACACACACACACACAAAGAACTCAAATAACAACG]

[+] EMBL BM608861             [CCGCCCACGCGTCCGCCCACGCGTCCGCCCAAATGGGGAAACTGCTGGCACATTAACTAAGACGAACTTGACGAATCACGAACGCTGTTCAGTTTAGTGAATTTAAACGATTCTTGACACACACACAACAAAAAACGGTTCCTTTTTTAATATGACTGACCAAGGATCAGCAGCAGTGTTTGGTGCGCAACCATAATTTAGCTAGGATGGGTGGGCTTTTGCTTCGTTAAATTATAATGCAAATTGAGCGAAAACGTAAGGGTTTACTGTGGGGAAAAAGGGGATAAAAACAATGTTTGAGATTACTGTCCCGAATGGAGGAGTCCTGCTTGTGAACACTTGCCATATCCTTCTTATCGTTGGCTCAAAAGAGGACACAAACAAACACACACACATACACATACACGCTTAACACGCATCCAATTCCATCCTCGATGTGTTATTTGTAACCGGGAAAGGTCGCGTTATGGAACTTCTTCTTTAAAGCTTTTGAGTGAGATTGACAGTTGTACAGTACAGAAGAAAAAAAAACAAACAACAAACCCAAAACACATACACACTCACAACGTGTTGGGATTAGCAGTCGAAATAGGCAAACATACACTAACAAACAAAAAAAACACACACACACACAAAGAACTCAAATAACAACG]




>consensus_5354#0
CCGCCCACGCGTCCGCCCACGCGTCCGCCCAAATGGGGAAACTGCTGGCACATTAACTAA
GACGAACTTGACGAATCACGAACGCTGTTCAGTTTAGTGAATTTAAACGATTCTTGACAC
ACACACAACAAAAAACGGTTCCTTTTTTAATATGACTGACCAAGGATCAGCAGCAGTGTT
TGGTGCGCAACCATAATTTAGCTAGGATGGGTGGGCTTTTGCTTCGTTAAATTATAATGC
AAATTGAGCGAAAACGTAAGGGTTTACTGTGGGGAAAAAGGGGATAAAAACAATGTTTGA
GATTACTGTCCCGAATGGAGGAGTCCTGCTTGTGAACACTTGCCATATCCTTCTTATCGT
TGGCTCAAAAGAGGACACAAACAAACACACACACATACACATACACGCTTAACACGCATC
CAATTCCATCCTCGATGTGTTATTTGTAACCGGGAAAGGTCGCGTTATGGAACTTCTTCT
TTAAAGCTTTTGAGTGAGATTGACAGTTGTACAGTACAGAAGAAAAAAAAACAAACAACA
AACCCAAAACACATACACACTCACAACGTGTTGGGATTAGCAGTCGAAATAGGCAAACAT
ACACTAACAAACAAAAAAAACACACACACACACAAAGAACTCAAATAACAACG

consensusID : consensus_5354#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [ATCGGNCACGAGGNNTAGTCGAGAGCCATTCGCTTTTGAAAAGCGGCACTAGTGTGTGTGCGTGTGAGTGTACAGAGAGGTGCTTCGGGAGATAGGAACTAGGAAAAGGGAGAAGAGGATTAGCGACGCGCCAGATGAATGGGTTGGGTCCGTGTGTGGGCGTGTATGTGTGTGTGTATCATCTTTGTGTCCGCTGCTTTTAGAAAGACTGGAGGAACCCAAATGGGGAAACTGCTGGCACATTAACTAAGACGAACTTGACGAATCACGAACGCTGTTTAGTTTAGTGAATTTAAACGATTCTTGACACACACAACAAAAAACGGTTCCTTTTGTAATATGACTGACCAAGGATCAGCAGCAGTGTTTGGTGCGCAACCATAATTTAGCTAGGATGGGTGGGCTTTATGCTTCGTTAAAGTTATAATGCACATTGAGCGAAAACGTAAGGGTTTACTGTGGGGAAAACGGGGATAAAAACAATCGTTTGAGATTACTGTCCCGAATGGCGGAGTCCTGCTTGTGAACACTTGCCATATCCTTGTCTGATCGTANNGGCTCAAAAGAGGACACGAAACGAGAAGCACGACACACGATACACGCTT]

[+] EMBL BX469676             [ATCGGNCACGAGGNNTAGTCGAGAGCCATTCGCTTTTGAAAAGCGGCACTAGTGTGTGTGCGTGTGAGTGTACAGAGAGGTGCTTCGGGAGATAGGAACTAGGAAAAGGGAGAAGAGGATTAGCGACGCGCCAGATGAATGGGTTGGGTCCGTGTGTGGGCGTGTATGTGTGTGTGTATCATCTTTGTGTCCGCTGCTTTTAGAAAGACTGGAGGAACCCAAATGGGGAAACTGCTGGCACATTAACTAAGACGAACTTGACGAATCACGAACGCTGTTTAGTTTAGTGAATTTAAACGATTCTTGACACACACAACAAAAAACGGTTCCTTTTGTAATATGACTGACCAAGGATCAGCAGCAGTGTTTGGTGCGCAACCATAATTTAGCTAGGATGGGTGGGCTTTATGCTTCGTTAAAGTTATAATGCACATTGAGCGAAAACGTAAGGGTTTACTGTGGGGAAAACGGGGATAAAAACAATCGTTTGAGATTACTGTCCCGAATGGCGGAGTCCTGCTTGTGAACACTTGCCATATCCTTGTCTGATCGTANNGGCTCAAAAGAGGACACGAAACGAGAAGCACGACACACGATACACGCTT]




>consensus_5354#1
ATCGGNCACGAGGNNTAGTCGAGAGCCATTCGCTTTTGAAAAGCGGCACTAGTGTGTGTG
CGTGTGAGTGTACAGAGAGGTGCTTCGGGAGATAGGAACTAGGAAAAGGGAGAAGAGGAT
TAGCGACGCGCCAGATGAATGGGTTGGGTCCGTGTGTGGGCGTGTATGTGTGTGTGTATC
ATCTTTGTGTCCGCTGCTTTTAGAAAGACTGGAGGAACCCAAATGGGGAAACTGCTGGCA
CATTAACTAAGACGAACTTGACGAATCACGAACGCTGTTTAGTTTAGTGAATTTAAACGA
TTCTTGACACACACAACAAAAAACGGTTCCTTTTGTAATATGACTGACCAAGGATCAGCA
GCAGTGTTTGGTGCGCAACCATAATTTAGCTAGGATGGGTGGGCTTTATGCTTCGTTAAA
GTTATAATGCACATTGAGCGAAAACGTAAGGGTTTACTGTGGGGAAAACGGGGATAAAAA
CAATCGTTTGAGATTACTGTCCCGAATGGCGGAGTCCTGCTTGTGAACACTTGCCATATC
CTTGTCTGATCGTANNGGCTCAAAAGAGGACACGAAACGAGAAGCACGACACACGATACA
CGCTT

consensusID : consensus_5354#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence

                              [CCGCCCACGCGTCCGAAAAAAGGTCGCGTTGTACGAGCCGCAAGGGAAACTCTGTGTGTGCATCATAATAATAATATCCGCAGCTACGGGATCGCGTTTTGCCGCGGGTGATGATGGAAAAATTGTTAACCCAGCCTCCTCAGCAAACAGTGGCAAGCGAAAACGTAAGGGTTTACTGTGGGGAAAAAGGGGATAAAAACAATGTTTGAGATTACTGTACCGAATGGAGGAGTCCTGCTTGTGAACACTTGCCATATCCTTCTTATCGTTGGCTCAAAAAAGGACACAAACAAACACACACACACACACATACACGCTTAACACGCATCCAATTCCATCCTCGATGTGTTATTTGTAACCGGGAAAGGTCGCGTTATGGAACTTCTTCTTTAAAGCTTTTGAGTGAGATTGACAGTTGTACAGTACAGAAGAAAAAAAAACAAACAACAAACCCAAAACACACACACAACATGTTGGAGTAGCAGTCGATATAGGCAAACATACACTCACAAACAAAAAAAAACACACACACACACAAAGAACTCAAATAACAACGATACCACAAAGTTGTGTAACCCGCAATGTGTGCTCTGTGTGTGT]

[+] EMBL BM647070             [CCGCCCACGCGTCCGAAAAAAGGTCGCGTTGTACGAGCCGCAAGGGAAACTCTGTGTGTGCATCATAATAATAATATCCGCAGCTACGGGATCGCGTTTTGCCGCGGGTGATGATGGAAAAATTGTTAACCCAGCCTCCTCAGCAAACAGTGGCAAGCGAAAACGTAAGGGTTTACTGTGGGGAAAAAGGGGATAAAAACAATGTTTGAGATTACTGTACCGAATGGAGGAGTCCTGCTTGTGAACACTTGCCATATCCTTCTTATCGTTGGCTCAAAAAAGGACACAAACAAACACACACACACACACATACACGCTTAACACGCATCCAATTCCATCCTCGATGTGTTATTTGTAACCGGGAAAGGTCGCGTTATGGAACTTCTTCTTTAAAGCTTTTGAGTGAGATTGACAGTTGTACAGTACAGAAGAAAAAAAAACAAACAACAAACCCAAAACACACACACAACATGTTGGAGTAGCAGTCGATATAGGCAAACATACACTCACAAACAAAAAAAAACACACACACACACAAAGAACTCAAATAACAACGATACCACAAAGTTGTGTAACCCGCAATGTGTGCTCTGTGTGTGT]




>consensus_5354#2
CCGCCCACGCGTCCGAAAAAAGGTCGCGTTGTACGAGCCGCAAGGGAAACTCTGTGTGTG
CATCATAATAATAATATCCGCAGCTACGGGATCGCGTTTTGCCGCGGGTGATGATGGAAA
AATTGTTAACCCAGCCTCCTCAGCAAACAGTGGCAAGCGAAAACGTAAGGGTTTACTGTG
GGGAAAAAGGGGATAAAAACAATGTTTGAGATTACTGTACCGAATGGAGGAGTCCTGCTT
GTGAACACTTGCCATATCCTTCTTATCGTTGGCTCAAAAAAGGACACAAACAAACACACA
CACACACACATACACGCTTAACACGCATCCAATTCCATCCTCGATGTGTTATTTGTAACC
GGGAAAGGTCGCGTTATGGAACTTCTTCTTTAAAGCTTTTGAGTGAGATTGACAGTTGTA
CAGTACAGAAGAAAAAAAAACAAACAACAAACCCAAAACACACACACAACATGTTGGAGT
AGCAGTCGATATAGGCAAACATACACTCACAAACAAAAAAAAACACACACACACACAAAG
AACTCAAATAACAACGATACCACAAAGTTGTGTAACCCGCAATGTGTGCTCTGTGTGTGT

consensusID : consensus_5354#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [GATCGCCCGAGGGCTTNTGCTTCGCTTATATGCAAATTGAGCGAAAACGTAAGGGTTTACTGTGGGGAAAAAGGGGATAAAAACAATGTTTGAGGATTACTGTGATCCGAGATGGAGGAGTCCTGCTATGTGAACACTTGCCATATCCTTCTTTATCGGTTGGCGTCATAACAACAGGGGAACAACTAAAANACGCTATANAAACNAAACGAAACNAAACAACACAACCAACCAACCAATTACCNAACGGCCCTTAAGACAACGGCAATTCCAAAT]

[+] EMBL AL931775             [GATCGCCCGAGGGCTTNTGCTTCGCTTATATGCAAATTGAGCGAAAACGTAAGGGTTTACTGTGGGGAAAAAGGGGATAAAAACAATGTTTGAGGATTACTGTGATCCGAGATGGAGGAGTCCTGCTATGTGAACACTTGCCATATCCTTCTTTATCGGTTGGCGTCATAACAACAGGGGAACAACTAAAANACGCTATANAAACNAAACGAAACNAAACAACACAACCAACCAACCAATTACCNAACGGCCCTTAAGACAACGGCAATTCCAAAT]




>consensus_5354#3
GATCGCCCGAGGGCTTNTGCTTCGCTTATATGCAAATTGAGCGAAAACGTAAGGGTTTAC
TGTGGGGAAAAAGGGGATAAAAACAATGTTTGAGGATTACTGTGATCCGAGATGGAGGAG
TCCTGCTATGTGAACACTTGCCATATCCTTCTTTATCGGTTGGCGTCATAACAACAGGGG
AACAACTAAAANACGCTATANAAACNAAACGAAACNAAACAACACAACCAACCAACCAAT
TACCNAACGGCCCTTAAGACAACGGCAATTCCAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5354#1      ------------------------------------------------------------
consensus_5354#3      ------------------------------------------------------------
consensus_5354#0      CCGCCCACGCGTCCGCCCACGCGTCCGCCCAAATGGGGAAACTGCTGGCACATTAACTAA 60
consensus_5354#2      ------------------------------------------------------------
                                                                                  

consensus_5354#1      ----------------------ATCGGNCACGAGGNNTAGTCGAGAGCCATTCGCTTTTG 38
consensus_5354#3      ------------------------------------------------------------
consensus_5354#0      GACGAACTTGACGAATCACGAACGCTGTTCAGTTTAGTGAATTTAAACGATTCTTGACAC 120
consensus_5354#2      ----------------------------CCGCCCACGCGTCCGAAAAAAGGTCGCGTTGT 32
                                                                                  

consensus_5354#1      AAAAGCGGCACTAGTGTGTGTGCGTGTGAGTGTACAGAGAGGTGCTTCGGGAGATAGGAA 98
consensus_5354#3      ------------------------------------------------------------
consensus_5354#0      ACACACAACAAAAAACGGTTCCTTTTTTAATATGACTGACCAAGGATCAGCAGCAGTGTT 180
consensus_5354#2      ACGAGCCGCAAGGGAAACTCTGTGTGTGCATCATAATAAT--AATATCCGCAGCTACG-- 88
                                                                                  

consensus_5354#1      CTAGGAAAAGGGAGAAGAGGATTAGCGACGCGCCAGATGAATGGGTTGGGTCCGTGTGTG 158
consensus_5354#3      ------------------------------------------------------------
consensus_5354#0      TGGTGCGCAACCATAATTTAGCTA-GGATG-GGTGGGCTTTTGCTTC-GTTAAATTATAA 237
consensus_5354#2      -GGATCGCGTTTTGCCGCGGGTGA-TGATG-GAAAAATTGTTAACCCAGCCTCCTCAGCA 145
                                                                                  

consensus_5354#1      GGCGTGTATGTGTGTGTGTATCATCTTTGTGTCCGCTGCTTTTAGAAAGACTGGAGGAAC 218
consensus_5354#3      ------------------------------------------------------------
consensus_5354#0      TGCAA-ATTGAGCGAAAACGTAA-----GGGTTTACTG--TGGGGAAAAAGGGGATAAAA 289
consensus_5354#2      AACAGTGGCAAGCGAAAACGTAA-----GGGTTTACTG--TGGGGAAAAAGGGGATAAAA 198
                                                                                  

consensus_5354#1      CCAAATGGGGAAACTGCTGGCACATTAACTAAGACGAACTTGACGAATCACGAACGCTGT 278
consensus_5354#3      ------------------------------------------------------------
consensus_5354#0      ACAATGTTTGAGATTACTG---TCCCGAATGGAGGAGTCCTGCTTGTGAACACTTGCCAT 346
consensus_5354#2      ACAATGTTTGAGATTACTG---TACCGAATGGAGGAGTCCTGCTTGTGAACACTTGCCAT 255
                                                                                  

consensus_5354#1      TTAGTTTAGTGAATTTAAACGATTCTTGACACACACAACAAAAAACGGTTCCTTTTGTAA 338
consensus_5354#3      ------------------------------------------------------------
consensus_5354#0      ATCCTTCTTATCGTTGGCTCAAAAGAGGACACAAACAAACACACACACATACACATACAC 406
consensus_5354#2      ATCCTTCTTATCGTTGGCTCAAAAAAGGACACAAACAAACACACACACACACACATACAC 315
                                                                                  

consensus_5354#1      TATGACTGACCAAGGATCAGCAGCAGTGTTTGGTGCGCAACCATAATTTAGCTAGGATGG 398
consensus_5354#3      -------------------------------------------------------GATCG 5
consensus_5354#0      ----GCTTAACACGCATCCAATTCCATCCTCGATGTGTTATT----TGTAACCGGGAAAG 458
consensus_5354#2      ----GCTTAACACGCATCCAATTCCATCCTCGATGTGTTATT----TGTAACCGGGAAAG 367
                                                                             **  *

consensus_5354#1      GT--GGGCTTTATGCTTCGTTAAAGTTATAATGCACATTGAGCGAAAACGTAAGGGTTTA 456
consensus_5354#3      CCCGAGGGCTTNTGCTTCGCT-----TATA-TGCAAATTGAGCGAAAACGTAAGGGTTTA 59
consensus_5354#0      GTCGCGTTATGGAACTTCTTC-----TTTAAAGCTT-TTGAGTGAGATTG-ACAGTTGTA 511
consensus_5354#2      GTCGCGTTATGGAACTTCTTC-----TTTAAAGCTT-TTGAGTGAGATTG-ACAGTTGTA 420
                           *   *    ****        * **  **   ***** ** *  * *  * * **

consensus_5354#1      CTGTGGGGAAAACGGGGATAAAAACAATCGTTTGAGATTACTGT---CCCGAATGGCGGA 513
consensus_5354#3      CTGTGGGGAAAAAGGGGATAAAAACAATGTTTGAGGATTACTGTGATCCGAGATGGAGGA 119
consensus_5354#0      CAGTACAGAAGAAAAAAAAACAAACAACAAACCCAAAACACATA----CACACTCACAAC 567
consensus_5354#2      CAGTACAGAAGAAAAAAAAACAAACAACAAACCCAAAACACACA----CACA------AC 470
                      * **   *** *     * * ******         *  **       *           

consensus_5354#1      GTCCTGCT-TGTGAACACTTGCCATATCCTTGTCTGATCGTANNGGC--TCAAAAGAGGA 570
consensus_5354#3      GTCCTGCTATGTGAACACTTGCCATATCCTTCTTTATCGGTTGGCGTCATAACAACAGGG 179
consensus_5354#0      GTGTTGGG--ATTAGCAGTCGAAATAGGCAAACATACACTAACAAACAAAAAAAA-CACA 624
consensus_5354#2      ATGTTGGA--GT-AGCAGTCGATATAGGCAAACATACACTCACAAACAAAAAAAAACACA 527
                       *  **     * * ** * *  ***  *     *                * **     

consensus_5354#1      CACGAA-ACGAGAAGCACGACACACGATACACGCTT------------------------ 605
consensus_5354#3      GAACAA-CTAAAANACGCTATANAAACNAAACGAAACNAAACAACACAACCAACCAACCA 238
consensus_5354#0      CACACACACAAAGAACTCAAATAACAACG------------------------------- 653
consensus_5354#2      CACACACACAAAGAACTCAAATAACAACG-ATACCACAAAGTTGTGTAACCCGCAATGTG 586
                       *   *    *    * * *   *                                    

consensus_5354#1      --------------------------------------
consensus_5354#3      ATTACCNAACGGCCCTTAAGACAACGGCAATTCCAAAT 276
consensus_5354#0      --------------------------------------
consensus_5354#2      TGCTCTGTGTGTGT------------------------ 600