cluster # 5360

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Anopheles gambiae
cluster # 5360 cluster # 5360 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5360#0 length = 786 sequences # 3

consensus_5360#1 length = 503 sequences # 1

consensusID : consensus_5360#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 786
fasta sequence

                              [CCGCGAGTGCACGTCGGCGGTGTCGGTGGACGTCGAGGGCAGCATGTACCAGTACTGCCGGGCGGTCGGCATCACGCTCTTCACCGTGTCGCACCGGAAGTCGCTCTGGACGCACCACGACTACTACCTCAAGTTCGACGGCCACGGGGCGTACGAGTTCGGGCCGATCGAGGGCACGCAGGACCAGTTCGGCTCGTAAGCGTCGATTTGTTGTGTGTGCGTGTTTTGTTTTTTTACTTCGCTTTCTTCCCTTCGGCAAGTGGAGCCGCGCTGCTCGGCTTCGGCTTCTTCTATTTCCATTGTTTTTGTTGTTTTTTCTTTTAACGCAACGTTTAGCGAGTAGCGTGCGTGATTTTTCCTTTTTTTTTAAACAAAGCAGAAGGGACTTTTTATTTTCACTCTCTCTCTCTGTTTTCCATCGTACAGTGAACTCGTTACGCTATTTTATAGGTACATATATTTACTTTTGTTCTCTCGCGATAATAGGTGTTTGTAAAGCTAATCTAGTAAACACGGGTGCAGGAAACCAGTTCTTTCTTTTTGTTTTAGTGAAATTTCCATCCTTCTCCCTTTTTTTATTTTAAATTCACATAAGACCACATTTTAATGCAGTTTTTCGCGTGCACAAAAAGCGTTCTGAAACCTGAACACTGATGATGAGGTTGGTGGGTAGGAACTTAGCGGATTGCGGGGTTGAGGGAATAGGTTTTTTTTACATTTGTTTTACATTCGGTCGCCCGTCTCTGTCTGTCTGTCTATTATCATTCCACGTGTTTTGTTGAAGGC]

[+] EMBL BM627769             [CCGCGAGTGCACGTCGGCGGTGTCGGTGGACGTCGAGGGCAGCATGTACCAGTACTGCCGGGCGGTCGGCATCACGCTCTTCACCGTGTCGCACCGGAAGTCGCTCTGGACGCACCACGACTACTACCTCAAGTTCGACGGCCACGGGGCGTACGAGTTCGGGCCGATCGAGGGCACGCAGGACCAGTTCGGCTCGTAAGCGTCGATTTGTTGTGTGTGCGTGTTTTGTTTTTTTACTTCGCTTTCTTCCCTTCGGCAAGTGGAGCCGCGCTGCTCGGCTTCGGCTTCTTCTATTTCCATTGTTTTTGTTGTTTTTTCTTTTAACGCAACGTTTAGCGAGTAGCGTGCGTGATTTTTCCTTTTTTTTTAAACAAAGCAGAAGGGACTTTTTATTTTCACTCTCTCTCTCTGTTTTCCATCGTACAGTGAACTCGTTACGCTATTTTATAGGTACATATATTTACTTTTGTTCTCTCGCGATAATAGGTGTTTGTAAAGCTAATCTAGTAAACACGGGTGCAGGAAACCAGTTCTTTCTTTTTGTTTTAGTGAAATTTCCATCCTTCTCCCTTTTTTTATTTTAAATTCACATAAGACCACATTTTAATGCAGTTTTTCGCGTGCACAAAAAGCGTTCTGAAACCTGAACAC                                                                                                                                       ]
[+] EMBL BM589636             [                                                                                                                                           ccgCACGGGGCGTACGAGTTCGGGCCGATCGAGGGCACGCAGGACCAGTTCGGCTCGTAAGCGTCGATTTGTTGTGTGTGCGTGTTTTGTTTTTTTACTTCGCTTTCTTCCCTTCGGCAAGTGGAGCCGCGCTGCTCGGCTTCGGCTTCTTCTATTTCCATTGTTTTTGTTGTTTTTTCTTTTAACGCAACGTTTAGCGAGTAGCGTGCGTGATTTTTCCTTTTTTTTTAAACAAAGCAGAAGGGACTTTTTATTTTCACTCTCTCTCTCTGTTTTCCATCGTACAGTGAACTCGTTACGCTATTTTATAGGTACATATATTTACTTTTGTTCTCTCGCGATAATAGGTGTTTGTAAAGCTAATCTAGTAAACACGGGTGCAGGAAACCAGTTCTTTCTTTTTGTTTTAGTGAAATTTCCATCCTTCTCCCTTTTTTTATTTTAAATTCACATAAGACCACATTTTAATGCAGTTTTTCGCGTGCACAAAAAGCGTTCTGAAACCTGAACACTGATGATGAGGTTGGTGGGTAGGAACTTAGCGGATTGCGGGGTTGAGGGAATAGGTTTTTTTTACATTTGTTTTACATTCGGTCGCCCGTCTCTGTCTGTCTGTCTATTATCATTCCACGTGTTTTGTTGAAGGC]
[+] EMBL BM649188             [                                                                                                                                                                                                                                                                                                                                                                               TAAACAAAGCAGAAGGGACTTTTTATTTTCACTCTCTCTCTCTGTTTTCCATCGTACAGGGAACTCGTTACGCTATTTTATAGGTACATATATTTACTTTTGTTCTCTCGCGATAATAGGTGTTTG                                                                                                                                                                                                                                                                                                     ]




>consensus_5360#0
CCGCGAGTGCACGTCGGCGGTGTCGGTGGACGTCGAGGGCAGCATGTACCAGTACTGCCG
GGCGGTCGGCATCACGCTCTTCACCGTGTCGCACCGGAAGTCGCTCTGGACGCACCACGA
CTACTACCTCAAGTTCGACGGCCACGGGGCGTACGAGTTCGGGCCGATCGAGGGCACGCA
GGACCAGTTCGGCTCGTAAGCGTCGATTTGTTGTGTGTGCGTGTTTTGTTTTTTTACTTC
GCTTTCTTCCCTTCGGCAAGTGGAGCCGCGCTGCTCGGCTTCGGCTTCTTCTATTTCCAT
TGTTTTTGTTGTTTTTTCTTTTAACGCAACGTTTAGCGAGTAGCGTGCGTGATTTTTCCT
TTTTTTTTAAACAAAGCAGAAGGGACTTTTTATTTTCACTCTCTCTCTCTGTTTTCCATC
GTACAGTGAACTCGTTACGCTATTTTATAGGTACATATATTTACTTTTGTTCTCTCGCGA
TAATAGGTGTTTGTAAAGCTAATCTAGTAAACACGGGTGCAGGAAACCAGTTCTTTCTTT
TTGTTTTAGTGAAATTTCCATCCTTCTCCCTTTTTTTATTTTAAATTCACATAAGACCAC
ATTTTAATGCAGTTTTTCGCGTGCACAAAAAGCGTTCTGAAACCTGAACACTGATGATGA
GGTTGGTGGGTAGGAACTTAGCGGATTGCGGGGTTGAGGGAATAGGTTTTTTTTACATTT
GTTTTACATTCGGTCGCCCGTCTCTGTCTGTCTGTCTATTATCATTCCACGTGTTTTGTT
GAAGGC

consensusID : consensus_5360#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence

                              [GAATCGCCCCGAGGTTGTCCGGCGGCGAGAAGCAGCGGATCGCGATGGCCCGCCTGTTCTACCACAATCCGCAGTTCGCGATCCTGGACGAGTGCACGTCGGCGGTGTCGGATGGACGTCGAGGGCAGCATGTACCAGTACTGCCGGGCGGTCGGCATCACGCTCTTCACCGTGTCGCACCGGAAGTCGCTCTGGACGCACCACGACTACTACCTCAAGTTCGACGGCCACGGGGCGTACGAGTTCGGGCCGATCGAGGGCACGCAGGACCAGTTCGGCTCGTAAGCGTCGATTTGTTGTGTGTGCGTGTTTTGGTTTTTTACTTCGCTTTCTTCTATTTCCATTGTTTTGTTGTTTTTTTCTTTTAACGCAACGTTTAGCGAGTAGCGTGCGTGATTTTTCTTTTTTTTTTTTAACAAAGCAGAAGGGACTTTTAATTTTCACTCTCTCTCTCTCTGTTTTCAATCGTACAGTGAACTCGTTACGCTATTTTATAGGTACAT]

[+] EMBL AL931946             [GAATCGCCCCGAGGTTGTCCGGCGGCGAGAAGCAGCGGATCGCGATGGCCCGCCTGTTCTACCACAATCCGCAGTTCGCGATCCTGGACGAGTGCACGTCGGCGGTGTCGGATGGACGTCGAGGGCAGCATGTACCAGTACTGCCGGGCGGTCGGCATCACGCTCTTCACCGTGTCGCACCGGAAGTCGCTCTGGACGCACCACGACTACTACCTCAAGTTCGACGGCCACGGGGCGTACGAGTTCGGGCCGATCGAGGGCACGCAGGACCAGTTCGGCTCGTAAGCGTCGATTTGTTGTGTGTGCGTGTTTTGGTTTTTTACTTCGCTTTCTTCTATTTCCATTGTTTTGTTGTTTTTTTCTTTTAACGCAACGTTTAGCGAGTAGCGTGCGTGATTTTTCTTTTTTTTTTTTAACAAAGCAGAAGGGACTTTTAATTTTCACTCTCTCTCTCTCTGTTTTCAATCGTACAGTGAACTCGTTACGCTATTTTATAGGTACAT]




>consensus_5360#1
GAATCGCCCCGAGGTTGTCCGGCGGCGAGAAGCAGCGGATCGCGATGGCCCGCCTGTTCT
ACCACAATCCGCAGTTCGCGATCCTGGACGAGTGCACGTCGGCGGTGTCGGATGGACGTC
GAGGGCAGCATGTACCAGTACTGCCGGGCGGTCGGCATCACGCTCTTCACCGTGTCGCAC
CGGAAGTCGCTCTGGACGCACCACGACTACTACCTCAAGTTCGACGGCCACGGGGCGTAC
GAGTTCGGGCCGATCGAGGGCACGCAGGACCAGTTCGGCTCGTAAGCGTCGATTTGTTGT
GTGTGCGTGTTTTGGTTTTTTACTTCGCTTTCTTCTATTTCCATTGTTTTGTTGTTTTTT
TCTTTTAACGCAACGTTTAGCGAGTAGCGTGCGTGATTTTTCTTTTTTTTTTTTAACAAA
GCAGAAGGGACTTTTAATTTTCACTCTCTCTCTCTCTGTTTTCAATCGTACAGTGAACTC
GTTACGCTATTTTATAGGTACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5360#0      ------------------------------------------------------------
consensus_5360#1      GAATCGCCCCGAGGTTGTCCGGCGGCGAGAAGCAGCGGATCGCGATGGCCCGCCTGTTCT 60
                                                                                  

consensus_5360#0      -------------------------CCGCGAGTGCACGTCGGCGGTGTCGG-TGGACGTC 34
consensus_5360#1      ACCACAATCCGCAGTTCGCGATCCTGGACGAGTGCACGTCGGCGGTGTCGGATGGACGTC 120
                                                  *********************** ********

consensus_5360#0      GAGGGCAGCATGTACCAGTACTGCCGGGCGGTCGGCATCACGCTCTTCACCGTGTCGCAC 94
consensus_5360#1      GAGGGCAGCATGTACCAGTACTGCCGGGCGGTCGGCATCACGCTCTTCACCGTGTCGCAC 180
                      ************************************************************

consensus_5360#0      CGGAAGTCGCTCTGGACGCACCACGACTACTACCTCAAGTTCGACGGCCACGGGGCGTAC 154
consensus_5360#1      CGGAAGTCGCTCTGGACGCACCACGACTACTACCTCAAGTTCGACGGCCACGGGGCGTAC 240
                      ************************************************************

consensus_5360#0      GAGTTCGGGCCGATCGAGGGCACGCAGGACCAGTTCGGCTCGTAAGCGTCGATTTGTTGT 214
consensus_5360#1      GAGTTCGGGCCGATCGAGGGCACGCAGGACCAGTTCGGCTCGTAAGCGTCGATTTGTTGT 300
                      ************************************************************

consensus_5360#0      GTGTGCGTGTTTTGTTTTTTTACTTCGCTTTCTTCCCTTCGGCAAGTGGAGCCGCGCTGC 274
consensus_5360#1      GTGTGCGTGTTTTGGTTTTTTACTTCGCTTTCTTC------------------------- 335
                      ************** ********************                         

consensus_5360#0      TCGGCTTCGGCTTCTTCTATTTCCATTGTTTTTGTTGTTTTTTCTTTTAACGCAACGTTT 334
consensus_5360#1      -----------------TATTTCCATTGTTTTGTTGTTTTTTTCTTTTAACGCAACGTTT 378
                                       ***************  *  ***********************

consensus_5360#0      AGCGAGTAGCGTGCGTGATTTTTCCTTTTTTTTTA-AACAAAGCAGAAGGGACTTTTTAT 393
consensus_5360#1      AGCGAGTAGCGTGCGTGATTTTTCTTTTTTTTTTTTAACAAAGCAGAAGGGACTTTTAAT 438
                      ************************ *********  ********************* **

consensus_5360#0      TTTCACTCTCTCTCTCT--GTTTTCCATCGTACAGTGAACTCGTTACGCTATTTTATAGG 451
consensus_5360#1      TTTCACTCTCTCTCTCTCTGTTTTCAATCGTACAGTGAACTCGTTACGCTATTTTATAGG 498
                      *****************  ****** **********************************

consensus_5360#0      TACATATATTTACTTTTGTTCTCTCGCGATAATAGGTGTTTGTAAAGCTAATCTAGTAAA 511
consensus_5360#1      TACAT------------------------------------------------------- 503
                      *****                                                       

consensus_5360#0      CACGGGTGCAGGAAACCAGTTCTTTCTTTTTGTTTTAGTGAAATTTCCATCCTTCTCCCT 571
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      TTTTTTATTTTAAATTCACATAAGACCACATTTTAATGCAGTTTTTCGCGTGCACAAAAA 631
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      GCGTTCTGAAACCTGAACACTGATGATGAGGTTGGTGGGTAGGAACTTAGCGGATTGCGG 691
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      GGTTGAGGGAATAGGTTTTTTTTACATTTGTTTTACATTCGGTCGCCCGTCTCTGTCTGT 751
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      CTGTCTATTATCATTCCACGTGTTTTGTTGAAGGC 786
consensus_5360#1      -----------------------------------