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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5370#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1122 fasta sequence
[CCGGGTATGTGTGTGTGTTAGGGTAAAACAAGCGTAGGGCACAAAGGTATCCAAACAAAGTCGATAGGGATAATTTCGTTTCGTCGGGAAGACACACAGGGCAAACTGGGTAGGGTATGAGTTATTAGTAGGAGACAGAAAGGACAACAAACCTAATACTAGAAGCTAGGGCTGTGCATCATGTACTCGGTAGCATTATTATTGAACAAACCCCCGGCTCAGACGGGTGGAGAGAGATAAATTCAGTTGTGAGGCAGCGGAAACGGAAACATACCAAAACGGAACAGATCCAACATTGCCAAGTGAAGCCAGCAGGAGATTAAAAAGAATGGGAAGCGTTAATATTGATAGGGACAATTTTAAGCCAATTTAACTCAGATTAGGGTACACAAGCTTAGGGATAATGTTAGGGCAAAACGAAACAATACTATGTAGGGAATCAGTGTGACTGAGAGAGAACGTGTGAGTGTGTGTGTGTGTGTGTGTGAATGGAGTGTATGAGTATGAGTATAATTGTGAGCAAAATGCCATTAGTGCTTACTTTTTCCGTAGCGTGTAGTTCGTTGTTCAAGGCGTTTGCTAATGGCTAAATGTTTTCTGATTTCCGATATCTGAAACGGAGTGGAAAACGGT-AGATAAAACATACACACATCCAATCCAATCTATCATCTTCG-ATTGCGCCGGTGCCGTGTGCA-CAT-AGAATCTGTATAGAACTTT--CGCCTCTTCGCTATAGAGATTAAACGAAACGTTGTTTGCTGTGTATTGTTTTTTTGTTTTTTTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAAACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGAAGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAGGAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCGCAGGGCCAAATCATCGTGCATTCCGTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAATCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTTTCTATATCGGGT]
[+] EMBL BM624138 [CCGGGTATGTGTGTGTGTTAGGGTAAAACAAGCGTAGGGCACAAAGGTATCCAAACAAAGTCGATAGGGATAATTTCGTTTCGTCGGGAAGACACACAGGGCAAACTGGGTAGGGTATGAGTTATTAGTAGGAGACAGAAAGGACAACAAACCTAATACTAGAAGCTAGGGCTGTGCATCATGTACTCGGTAGCATTATTATTGAACAAACCCCCGGCTCAGACGGGTGGAGAGAGATAAATTCAGTTGTGAGGCAGCGGAAACGGAAACATACCAAAACGGAACAGATCCAACATTGCCAAGTGAAGCCAGCAGGAGATTAAAAAGAATGGGAAGCGTTAATATTGATAGGGACAATTTTAAGCCAATTTAACTCAGATTAGGGTACACAAGCTTAGGGATAATGTTAGGGCAAAACGAAACAATACTATGTAGGGAATCAGTGTGACTGAGAGAGAACGTGTGAGTGTGTGTGTGTGTGTGTGTGAATGGAGTGTATGAGTATGAGTATAATTGTGAGCAAAATGCCATTAGTGCTTACTTTTTCCGTAGCGTGTAGTTCGTTGTTCAAGGCGTTTGCTAATGGCTAAATGTTTTCTGATTTCCGATATCTGAAACGGAGTGGAAAACGGT AGATAAAACATACACACATCCA ]
[+] EMBL BX621878 [ anTATTGATAGGGACAATTTTAAGCCAATTTAACTCAGATTAGGGTACACAAGCTTAGGGATAATGTTAGGGCAAAACGAAACAATACTATGTAGGGAATCAGTGTGACTGAGAGAGAACGTGTGAGTGTGTGTGTGTGTGTGTGTGAATGGAGTGTATGAGTATGAGTATAATTGTGAGCAAAATGCCATTAGTGCTTACTTTTTCCGTAGCGTGTAGTTCGTTGTTCAAGGCGTTTGCTAATGGCTAAATGTTTTCTGATTTCCGATATCTGAAACGGAGTGGAAAACGGT AGATAAAACATACACACATCCAATCCAATCTATCATCTTCG ATTGCGCCGGTGCCGTGTGCA CAT AGAATCTGTATAGAACTTT CGCCTCTTCGCTATAGAGATTAAACGAAACGTTGTTTGCTGTGTATTGTTTTTTTGTTTTTTTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAAACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGAAGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAGGAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCGCAGGGCCAAATCATCGTGCATTCCGTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAATCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTTTCTATATCGGGT]
[+] EMBL BX619362 [ GTGTGACTGAGAGAGAACGTGTGAGTGTGTGTGTGTGTGTGTGTGAATGGAGTGTATGAGTATGAGTATAATTGTGAGCAAAATTCCATTAGTGCTTACTTTTTCCGTAGCGTGTAGTTCGTTGTTCAAGGCGTTTGCTAATGGCTAAATGTTTTCTGATTTCCGATATCTGAAACGGAGTGGAAAACGGTAAGATAAAACATACACACATCCAATCCAATCTATCATCTTCGNATTGCGCCGGTGCCGTGTGCACCATAANAATCTGTATAGAACTTTTCCGCCTCTTCGC ]
consensusID : consensus_5370#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence
[AAGAATCGCCCCGAGGTTGATTTCCGATATCTGAAACGGAGTGGAAAACGGTAGATAAAACATACACACATCCAATCCAATCTATCATCTTCGATTGCGCCGGTGCCGTGTGCACATAGAATCTGTATAGAACTTTCGCCTCTTCGCTATAGAGATTAAACGAAACGTGTTTGCTGTGTATTGTTTTTATATGTTATNTCTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAAACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGAAGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAGGAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCGCAGGGCCAAATCATCGTGCATTCGTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAATCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTCCTATATCGGG]
[+] EMBL AL932027 [AAGAATCGCCCCGAGGTTGATTTCCGATATCTGAAACGGAGTGGAAAACGGTAGATAAAACATACACACATCCAATCCAATCTATCATCTTCGATTGCGCCGGTGCCGTGTGCACATAGAATCTGTATAGAACTTTCGCCTCTTCGCTATAGAGATTAAACGAAACGTGTTTGCTGTGTATTGTTTTTATATGTTATNTCTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAAACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGAAGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAGGAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCGCAGGGCCAAATCATCGTGCATTCGTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAATCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTCCTATATCGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5370#0 CCGGGTATGTGTGTGTGTTAGGGTAAAACAAGCGTAGGGCACAAAGGTATCCAAACAAAG 60
consensus_5370#1 ------------------------------------------------------------
consensus_5370#0 TCGATAGGGATAATTTCGTTTCGTCGGGAAGACACACAGGGCAAACTGGGTAGGGTATGA 120
consensus_5370#1 ------------------------------------------------------------
consensus_5370#0 GTTATTAGTAGGAGACAGAAAGGACAACAAACCTAATACTAGAAGCTAGGGCTGTGCATC 180
consensus_5370#1 ------------------------------------------------------------
consensus_5370#0 ATGTACTCGGTAGCATTATTATTGAACAAACCCCCGGCTCAGACGGGTGGAGAGAGATAA 240
consensus_5370#1 ------------------------------------------------------------
consensus_5370#0 ATTCAGTTGTGAGGCAGCGGAAACGGAAACATACCAAAACGGAACAGATCCAACATTGCC 300
consensus_5370#1 ------------------------------------------------------------
consensus_5370#0 AAGTGAAGCCAGCAGGAGATTAAAAAGAATGGGAAGCGTTAATATTGATAGGGACAATTT 360
consensus_5370#1 ------------------------------------------------------------
consensus_5370#0 TAAGCCAATTTAACTCAGATTAGGGTACACAAGCTTAGGGATAATGTTAGGGCAAAACGA 420
consensus_5370#1 ------------------------------------------------------------
consensus_5370#0 AACAATACTATGTAGGGAATCAGTGTGACTGAGAGAGAACGTGTGAGTGTGTGTGTGTGT 480
consensus_5370#1 ------------------------------------------------------------
consensus_5370#0 GTGTGTGAATGGAGTGTATGAGTATGAGTATAATTGTGAGCAAAATGCCATTAGTGCTTA 540
consensus_5370#1 ------------------------------------------------------------
consensus_5370#0 CTTTTTCCGTAGCGTGTAGTTCGTTGTTCAAGGCGTTTGCTAATGGCTAAATGTTTTCTG 600
consensus_5370#1 --------------------------------------AAGAATCGCCCCGAGGTT---G 19
*** ** * ** *
consensus_5370#0 ATTTCCGATATCTGAAACGGAGTGGAAAACGGTAGATAAAACATACACACATCCAATCCA 660
consensus_5370#1 ATTTCCGATATCTGAAACGGAGTGGAAAACGGTAGATAAAACATACACACATCCAATCCA 79
************************************************************
consensus_5370#0 ATCTATCATCTTCGATTGCGCCGGTGCCGTGTGCACATAGAATCTGTATAGAACTTTCGC 720
consensus_5370#1 ATCTATCATCTTCGATTGCGCCGGTGCCGTGTGCACATAGAATCTGTATAGAACTTTCGC 139
************************************************************
consensus_5370#0 CTCTTCGCTATAGAGATTAAACGAAACGTTGTTTGCTGTGTATTGTTTTTTTGTTTT--- 777
consensus_5370#1 CTCTTCGCTATAGAGATTAAACGAAACGT-GTTTGCTGTGTATTGTTTTTATATGTTATN 198
***************************** ******************** * * **
consensus_5370#0 TTTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAA 837
consensus_5370#1 TCTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAA 258
* **********************************************************
consensus_5370#0 ACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGA 897
consensus_5370#1 ACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGA 318
************************************************************
consensus_5370#0 AGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAG 957
consensus_5370#1 AGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAG 378
************************************************************
consensus_5370#0 GAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCG 1017
consensus_5370#1 GAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCG 438
************************************************************
consensus_5370#0 CAGGGCCAAATCATCGTGCATTCCGTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAA 1077
consensus_5370#1 CAGGGCCAAATCATCGTGCATTC-GTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAA 497
*********************** ************************************
consensus_5370#0 TCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTTTCTATATCGGGT 1122
consensus_5370#1 TCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTC-CTATATCGGG- 540
******************************** **********
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||