cluster # 538

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Anopheles gambiae
cluster # 538 cluster # 538 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_538#0 length = 660 sequences # 1

consensus_538#1 length = 526 sequences # 1

consensusID : consensus_538#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 660
fasta sequence

                              [CCGGGCACACTGAACGGTGGGCCAACCGCAGCCAGTGACGCTAAGCTGCCATGCTATCGGCTGAACGGGCAGATCACGAAGCACGGCCTGATGTATCTGGTCGAGTATGCCTACACCGGATCATTGGAAGTGCCCGATGAGATGATCCGCGATGTCTATCTCGCTGCCTGGCAGCTGAAGATCGATAGTGTGGTGAAGGAGTGCGCCCGCCATCTTGTGAGCGAGCTGGAGCCGGACATTTGCATCGAGACGCGTTCGCTGCCCGGTATCGAGCGGAACCGACGCTTCGTGCAGGAGGTGGACGCGTACATCGCGAAAAACTTCCATCTCGTCTCGGAGACGGCCGGGTTTCTGCAGCTGCCATGCGTGCTGATCGAGGTGCTGTATCAAACGCGCCAAGAGATGTCGCTGGTGGCGGAATGCTCTTTGGGCCGGCTCGTTATCGACTGGATTCGGCGCCAGATGACGAACGAGGATGTATCGGTTTCCTCGCTGCTAGAACGCTCGCACATGCTCTACTTGGCACTGGATAATTCACTGCAAGACTGTGCAGATCTGCCACCGGGACAAGAATCGGAGAGCGATTTGGTGCAGGACTACAAGCGGCTAGTGCTGAAATGCCCGAGCAATAAGAAGCATCGCAAAGCGTTGAAAACACCT]

[+] EMBL BM644791             [CCGGGCACACTGAACGGTGGGCCAACCGCAGCCAGTGACGCTAAGCTGCCATGCTATCGGCTGAACGGGCAGATCACGAAGCACGGCCTGATGTATCTGGTCGAGTATGCCTACACCGGATCATTGGAAGTGCCCGATGAGATGATCCGCGATGTCTATCTCGCTGCCTGGCAGCTGAAGATCGATAGTGTGGTGAAGGAGTGCGCCCGCCATCTTGTGAGCGAGCTGGAGCCGGACATTTGCATCGAGACGCGTTCGCTGCCCGGTATCGAGCGGAACCGACGCTTCGTGCAGGAGGTGGACGCGTACATCGCGAAAAACTTCCATCTCGTCTCGGAGACGGCCGGGTTTCTGCAGCTGCCATGCGTGCTGATCGAGGTGCTGTATCAAACGCGCCAAGAGATGTCGCTGGTGGCGGAATGCTCTTTGGGCCGGCTCGTTATCGACTGGATTCGGCGCCAGATGACGAACGAGGATGTATCGGTTTCCTCGCTGCTAGAACGCTCGCACATGCTCTACTTGGCACTGGATAATTCACTGCAAGACTGTGCAGATCTGCCACCGGGACAAGAATCGGAGAGCGATTTGGTGCAGGACTACAAGCGGCTAGTGCTGAAATGCCCGAGCAATAAGAAGCATCGCAAAGCGTTGAAAACACCT]




>consensus_538#0
CCGGGCACACTGAACGGTGGGCCAACCGCAGCCAGTGACGCTAAGCTGCCATGCTATCGG
CTGAACGGGCAGATCACGAAGCACGGCCTGATGTATCTGGTCGAGTATGCCTACACCGGA
TCATTGGAAGTGCCCGATGAGATGATCCGCGATGTCTATCTCGCTGCCTGGCAGCTGAAG
ATCGATAGTGTGGTGAAGGAGTGCGCCCGCCATCTTGTGAGCGAGCTGGAGCCGGACATT
TGCATCGAGACGCGTTCGCTGCCCGGTATCGAGCGGAACCGACGCTTCGTGCAGGAGGTG
GACGCGTACATCGCGAAAAACTTCCATCTCGTCTCGGAGACGGCCGGGTTTCTGCAGCTG
CCATGCGTGCTGATCGAGGTGCTGTATCAAACGCGCCAAGAGATGTCGCTGGTGGCGGAA
TGCTCTTTGGGCCGGCTCGTTATCGACTGGATTCGGCGCCAGATGACGAACGAGGATGTA
TCGGTTTCCTCGCTGCTAGAACGCTCGCACATGCTCTACTTGGCACTGGATAATTCACTG
CAAGACTGTGCAGATCTGCCACCGGGACAAGAATCGGAGAGCGATTTGGTGCAGGACTAC
AAGCGGCTAGTGCTGAAATGCCCGAGCAATAAGAAGCATCGCAAAGCGTTGAAAACACCT

consensusID : consensus_538#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence

                              [AAAATTGGGATGGGAAGAGTATGTGTGTGTGTTTGTGCACGTGCCGTTGTTTCCGTTTGCCGTCTCTCCAAGCCCGACCAGAGAAGCCGCGGGCGTGTGGAGCAATGGCGAGTCGTCGAGCTGTGCAGTGTCACCACCATCGGCTCATTCTACCCGTTGCGGCTGTTTCAGTTCCAGCGGCATATGTCGAACCTGCCGATGGTGGCCACTATCAGTGACAGATTCCCATTGAACGGCAAACTATTCTAGGCTTTGGTGCTACATTGCCATAACCACACAACAAAACACGCATAGAAGGGCGTGTGCTTTTTACTGCTCTGTTCGTACTTCGGTACGGTATATGCTTTACTAAATCGAGCTCTAGCCGCTTGGGGACGGAAACAATCTGCGGGCCTGTCTTAGATGCGAACGCATACTAGCACTCACCATCTCATCGGGCACTTCCAATGATCCGGTGTAGGCATACTCGACCAGATACATCAGGCCGTGCTTCGTGATCTGCCCGTTCAGCCGATAGCACGGCACC]

[+] EMBL CNS08OJC             [AAAATTGGGATGGGAAGAGTATGTGTGTGTGTTTGTGCACGTGCCGTTGTTTCCGTTTGCCGTCTCTCCAAGCCCGACCAGAGAAGCCGCGGGCGTGTGGAGCAATGGCGAGTCGTCGAGCTGTGCAGTGTCACCACCATCGGCTCATTCTACCCGTTGCGGCTGTTTCAGTTCCAGCGGCATATGTCGAACCTGCCGATGGTGGCCACTATCAGTGACAGATTCCCATTGAACGGCAAACTATTCTAGGCTTTGGTGCTACATTGCCATAACCACACAACAAAACACGCATAGAAGGGCGTGTGCTTTTTACTGCTCTGTTCGTACTTCGGTACGGTATATGCTTTACTAAATCGAGCTCTAGCCGCTTGGGGACGGAAACAATCTGCGGGCCTGTCTTAGATGCGAACGCATACTAGCACTCACCATCTCATCGGGCACTTCCAATGATCCGGTGTAGGCATACTCGACCAGATACATCAGGCCGTGCTTCGTGATCTGCCCGTTCAGCCGATAGCACGGCACC]




>consensus_538#1
AAAATTGGGATGGGAAGAGTATGTGTGTGTGTTTGTGCACGTGCCGTTGTTTCCGTTTGC
CGTCTCTCCAAGCCCGACCAGAGAAGCCGCGGGCGTGTGGAGCAATGGCGAGTCGTCGAG
CTGTGCAGTGTCACCACCATCGGCTCATTCTACCCGTTGCGGCTGTTTCAGTTCCAGCGG
CATATGTCGAACCTGCCGATGGTGGCCACTATCAGTGACAGATTCCCATTGAACGGCAAA
CTATTCTAGGCTTTGGTGCTACATTGCCATAACCACACAACAAAACACGCATAGAAGGGC
GTGTGCTTTTTACTGCTCTGTTCGTACTTCGGTACGGTATATGCTTTACTAAATCGAGCT
CTAGCCGCTTGGGGACGGAAACAATCTGCGGGCCTGTCTTAGATGCGAACGCATACTAGC
ACTCACCATCTCATCGGGCACTTCCAATGATCCGGTGTAGGCATACTCGACCAGATACAT
CAGGCCGTGCTTCGTGATCTGCCCGTTCAGCCGATAGCACGGCACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_538#0      CCGGGCACACTGAACGGTGGGCCAACCGCAGCCAGTGACGCTAAGCTGCCATGCTATCGG 60
consensus_538#1      ------------------------------------------------------------
                                                                                 

consensus_538#0      CTGAACGGGCAGATCACGAAGCACGGCCTGATGTATCTGGTCGAGTATGCCTACACCGGA 120
consensus_538#1      --------------------------AAAATTGGGATGGGAAGAGTATGTGTGT---GTG 31
                                                    **     **  *******  *     *  

consensus_538#0      TCATTGGAAGTGCCCGATGAGATGATCCGCGATGTCTATCTCGCTGCCTGGCAGCTGAAG 180
consensus_538#1      TTTGTGCACGTGCC-GTTGTTTCCGTTTGC--CGTCT--CTCCAAGCCCGACCAGAGAAG 86
                     *   ** * ***** * **      *  **   ****  ***   *** * *    ****

consensus_538#0      AT-CGATAGTGTGGTGAAGGAGTGCGCCCGCCATCTTGTGAGCGAGCTGGAGCCGGACAT 239
consensus_538#1      CCGCGGGCGTGTGGAGCAATGGCGAGTC-GTCGAGCTGTGCA-GTGTCACCACCATCGGC 144
                        **   ****** * *   * * * * * *    ****   * *      **      

consensus_538#0      TTGCATCGAGACGCGTTCGCTGCCCGGTATCGAGCGGAACCGACGCTTCGTGCAGGAGGT 299
consensus_538#1      TCAT-TCTACCCGTTGCGGCTGTTTCAGTTCCAGCGGCATATGTCGAACCTGCCGATGGT 203
                     *    ** *  **     ****       ** ***** *         * *** *  ***

consensus_538#0      GGACGCGTACATCGCGAAAAACTTCCATCTCGTCTCGGAGACGGCCGGGTTTCTGCA--- 356
consensus_538#1      GGCCACTATCA--GTGACAGATTCCCATTGAACGGCAAACTATTCTAGGCTTTGGTGCTA 261
                     ** * *   **  * ** * * * ****       *  *     *  ** **  *     

consensus_538#0      -GCTGCCATGCGTGCTGATCGAGGTGCTGTATCAAACGCGCCAAGAGATGTCGCTGGTGG 415
consensus_538#1      CATTGCCATAACCACACAACAAAACAC-GCATAGAAGG-GCGTGTGCTTTTTACTGCT-- 317
                        ******     *  * * *    * * **  ** * **       * *  *** *  

consensus_538#0      CGGAATGCTCTTTGGGCCGGCTCGTTATCGACTGGATTCGGCGCCAGATGACGAACGAGG 475
consensus_538#1      CTGTTCGTACTTCGGTACGGTATATGCTTTACTAAATCGAGCTCTAGCCGCTTGGGGACG 377
                     * *   *  *** **  ***    *  *  ***  **   ** * **  *      ** *

consensus_538#0      ATGTATCGGTTTCCTCGCTGCTAGAACGCTCGCACATGCTCTACTTGGCACTGGATAATT 535
consensus_538#1      --GAAACAATCTGCGGGCCTGTCTTAGATGCGAACGCATACTA----GCACTCACCATCT 431
                       * * *  * * *  **   *   *    ** **     ***    *****    *  *

consensus_538#0      CACTGCAAGACTGTGCAGATCTGCCACCGGGACAAGAATCGGAGAGCGATTTGGTGCAGG 595
consensus_538#1      CATCGGGCACTTCCAATGATCCGGTGTAGGCATACT----------CGACCAGATACA-- 479
                     **  *      *     **** *     ** * *            ***   * * **  

consensus_538#0      ACTACAAGCGGCTAGTGCTGAAATGCCCGAGCAATAAGAAGCATCGCAAAGCGTTGAAAA 655
consensus_538#1      ---TCAGGCCGTGCTTCGTGATCTGCCCGTTCAGCCGATAGCACGGCACC---------- 526
                         ** ** *    *  ***  ******  **      ****  ***            

consensus_538#0      CACCT 660
consensus_538#1      -----