cluster # 5381

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Anopheles gambiae
cluster # 5381 cluster # 5381 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5381#0 length = 907 sequences # 3

consensus_5381#1 length = 441 sequences # 1

consensusID : consensus_5381#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 907
fasta sequence

                              [AATTGCCCCGAGGTGCAACTGTCCAGCAGCAGCACCAGCTCCGGTTACCACAGTCTGCAGCACCATGGTTCGCATCGTCTAATTAATCAATCCTTCCTGGAGCAGCACCACCCGACGCCCTCACAGTCGCAACAGCCATCGTTATCATCGTTCCCGCATCAACTGAAGCCATCGAACGAGCCGCTGCCGGCGCACGGGTTTGGTAATCACGCGCTGGCAGTCACGTCGCTGGAGTTCCTCAACGCGCACGACGTCGGTGTGATAATGGCCGGGTACAGCGACAGCACGATACGATTGTGGCGCCCGAAGGAGACGAGCGACGAAAACCAGCTGCTTTCGGCGTGGCACGGTTTGCTAGATTTCAATACATCAAGCGCAGCCAAGGTAAGCTGTAGCGA-GGCGGCACCGGCCGCCCACGGCGGTCTGGTGCTCGCATGGCACCAGCGCACACAAACGATAATGGCGGCGGGTGAAGCGAAATACATACGCCTGTGGGATGCTGAGCGGGAGATGCGTATCTGTGATATTCCGAGCGGCTCCGACACGGCCGTACTGAAGCTGTCCTG-CGCGCCGAACGGTATATTTGCGGCCGGGTTTTACGATGGCAGTGTGCGCATATTCGATCGCCGCTGTCCGCCAGCCGAGACGCGCTGCGCAACCATACGGGAGCACATTAACCCGGTGCTGGCGATCTGCCTGCGCGACGATTGCGAATCGCTAGTGACCGCCGATGTGTCGGCTAGCGTACGGCTCTACGATATAAGGAAAGCGTACTCCTCCGTACAGAACTGGAGCGCCGGGACGGACGTGTCGGCGATGGCGATACACACGAGCGCCGACATTCTCGCCTGTGCAACCAGCCAGATCGTCATCTACGGGCTGGACGGTGTGGTGCTTAGCTCGGGCC]

[+] EMBL AL932544             [AATTGCCCCGAGGTGCAACTGTCCAGCAGCAGCACCAGCTCCGGTTACCACAGTCTGCAGCACCATGGTTCGCATCGTCTAATTAATCAATCCTTCCTGGAGCAGCACCACCCGACGCCCTCACAGTCGCAACAGCCATCGTTATCATCGTTCCCGCATCAACTGAAGCCATCGAACGAGCCGCTGCCGGCGCACGGGTTTGGTAATCACGCGCTGGCAGTCACGTCGCTGGAGTTCCTCAACGCGCACGACGTCGGTGTGATAATGGCCGGGTACAGCGACAGCACGATACGATTGTGGCGCCCGAAGGAGACGAGCGACGAAAACCAGCTGCTTTCGGCGTGGCACGGTTTGCTAGATTTCAATACATCAAGCGCAGCCAAGGTAAGCTGTAGCGACGGCGGCACCGGCCGCCCACGGCGGTCTGGTGCTCGCATGGCACCAGCGCACACAAACGATAATGGCGGCGGGTGAAGCGGAATACATACGCCTGTGGGATGCTGAGCGGGAGATGCGTATCTGTGATATTCCGAGCGGCTCCGACACGG CGTACTGAAGCTGTCCTGCCGCGCCGAACGGTATATTTGCGGCCGGGTTTTACGATGGC                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX609506             [                                                                                                                                                                                                                                                                                                                                  AAAACCAGCTGCTTTCGGCGTGGCACGGTTTGCTAGATTTCAATACATCAAGCGCAGCCAAGGTAAGCTGTAGCGA GGCGGCACCGGCCGCCCACGGCGGTCTGGTGCTCGCATGGCACCAGCGCACGCAAACGATAATGGCGGCGGGTGAAGCGAAATACATACGCCTGTGGGATGCTGAGCGGGAGATGCGTATCTGTGATATTCCGAGCGGCTCCGACACGGCCGTACTGAAGCTGTCCTG CGCGCCGAACGGTATATTTGCGGCCGGGTTTTACGATGGCAGTGTGCGCATATTCGATCGCCGCTGTCCGCCAGCCGAGACGCGCTGCGCAACCATACGGGAGCACATTAACCCGGTGCTGGCGATCTGCCTGCGCGACGATTGCGAATCGCTAGTGACCGCCGATGTGTCGGCTAGCGTACGGCTCTACGATATAAGGAAAGCGTACTCCTCCGTACAGAACTGGAGCGCCGGGACGGACGTGTCGGCGATGGCGATACACACGAGCGCCGACATTCTCGCCTGTGCAACCAGCCAGATCGTCATCTACGGGCTGGACGGTGTGGTGCTTAGCTCGGGCC]
[+] EMBL BX624273             [                                                                                                                                                                                                                                                                                                                                                                                     GCGCAGCCAAGGTAAGCTGTAGCGA GGCGGCACCGGCCGCCCACGGCGGTCTGGTGCTCGCATGGCACCAGCGCACACAAACGATAATGGCGGCGGGTGAAGCGAAATACATACGCCTGTGGGATGCTGAGCGGGAGATGCGTATCTGTGATATTCCGAGCGGCTCCGACACGGCCGTACTGAAGCTGTCCTG CGCGCCGAACGGTATATTTGCGGCCGGGTTTTACGATGGCAGTGTTCGCATATTCGATCGCCGCTGTCCGCCAGCCGAGACGCGCTGCGCAACCATACGGGAGCACATTAACCCGGTGCTGGCGATCTGCCTGCGCGACGATTGCGAATCGCTAGTGACCGCCGATGTGTCGGCTAGCGTACGGCTCTACGATATAAGGAAAGCGTACTCCTCCGTACAGAACTGNNGCGCCGGGACGGACGTGTCGGCGATGGCGATACACACGAGCGCCGACATTCTCGCCTGTGCNACCAGCCAGATCGTCATCTACNGGCTGGACGGTGTGG               ]




>consensus_5381#0
AATTGCCCCGAGGTGCAACTGTCCAGCAGCAGCACCAGCTCCGGTTACCACAGTCTGCAG
CACCATGGTTCGCATCGTCTAATTAATCAATCCTTCCTGGAGCAGCACCACCCGACGCCC
TCACAGTCGCAACAGCCATCGTTATCATCGTTCCCGCATCAACTGAAGCCATCGAACGAG
CCGCTGCCGGCGCACGGGTTTGGTAATCACGCGCTGGCAGTCACGTCGCTGGAGTTCCTC
AACGCGCACGACGTCGGTGTGATAATGGCCGGGTACAGCGACAGCACGATACGATTGTGG
CGCCCGAAGGAGACGAGCGACGAAAACCAGCTGCTTTCGGCGTGGCACGGTTTGCTAGAT
TTCAATACATCAAGCGCAGCCAAGGTAAGCTGTAGCGAGGCGGCACCGGCCGCCCACGGC
GGTCTGGTGCTCGCATGGCACCAGCGCACACAAACGATAATGGCGGCGGGTGAAGCGAAA
TACATACGCCTGTGGGATGCTGAGCGGGAGATGCGTATCTGTGATATTCCGAGCGGCTCC
GACACGGCCGTACTGAAGCTGTCCTGCGCGCCGAACGGTATATTTGCGGCCGGGTTTTAC
GATGGCAGTGTGCGCATATTCGATCGCCGCTGTCCGCCAGCCGAGACGCGCTGCGCAACC
ATACGGGAGCACATTAACCCGGTGCTGGCGATCTGCCTGCGCGACGATTGCGAATCGCTA
GTGACCGCCGATGTGTCGGCTAGCGTACGGCTCTACGATATAAGGAAAGCGTACTCCTCC
GTACAGAACTGGAGCGCCGGGACGGACGTGTCGGCGATGGCGATACACACGAGCGCCGAC
ATTCTCGCCTGTGCAACCAGCCAGATCGTCATCTACGGGCTGGACGGTGTGGTGCTTAGC
TCGGGCC

consensusID : consensus_5381#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [GCTCCGTTGAAGCCGATCGTGGGGACTCAGTATATCGAATGGTCGGTCAGCTTCTTTGCCCAACCTTCGAAGCGTATGAACGAAGCGAAAGCGGCCGGTACGGATCACAATTCGTACGAATTTCTCATCCGCAAATCGCGCTGGTTGCGCAACAAAGAGGTACGAGCGGAGGGGCGTACGCAGCGCATGAAGGCGATCTTTAAGCGGCTAGATGTGCAAAGTTGGTCCTGCCGTACGCAGCATGCACCGACGTTCATCAAGCTAAATCCTTACGACGAACAAGTGGCTTTCGCATACAAGGATCGAGTCATCGTAGTGAATATGAGCACGGAAGTCACGCACACGCTAATGCCCCAACGACAATCGATTTACGACAGCTCCAGCAACCTGTCCAGCAGCAGCACCAGCTCCGGTTACCACAGTCTGCAGCACCATGGTTCG]

[+] EMBL BX605859             [GCTCCGTTGAAGCCGATCGTGGGGACTCAGTATATCGAATGGTCGGTCAGCTTCTTTGCCCAACCTTCGAAGCGTATGAACGAAGCGAAAGCGGCCGGTACGGATCACAATTCGTACGAATTTCTCATCCGCAAATCGCGCTGGTTGCGCAACAAAGAGGTACGAGCGGAGGGGCGTACGCAGCGCATGAAGGCGATCTTTAAGCGGCTAGATGTGCAAAGTTGGTCCTGCCGTACGCAGCATGCACCGACGTTCATCAAGCTAAATCCTTACGACGAACAAGTGGCTTTCGCATACAAGGATCGAGTCATCGTAGTGAATATGAGCACGGAAGTCACGCACACGCTAATGCCCCAACGACAATCGATTTACGACAGCTCCAGCAACCTGTCCAGCAGCAGCACCAGCTCCGGTTACCACAGTCTGCAGCACCATGGTTCG]




>consensus_5381#1
GCTCCGTTGAAGCCGATCGTGGGGACTCAGTATATCGAATGGTCGGTCAGCTTCTTTGCC
CAACCTTCGAAGCGTATGAACGAAGCGAAAGCGGCCGGTACGGATCACAATTCGTACGAA
TTTCTCATCCGCAAATCGCGCTGGTTGCGCAACAAAGAGGTACGAGCGGAGGGGCGTACG
CAGCGCATGAAGGCGATCTTTAAGCGGCTAGATGTGCAAAGTTGGTCCTGCCGTACGCAG
CATGCACCGACGTTCATCAAGCTAAATCCTTACGACGAACAAGTGGCTTTCGCATACAAG
GATCGAGTCATCGTAGTGAATATGAGCACGGAAGTCACGCACACGCTAATGCCCCAACGA
CAATCGATTTACGACAGCTCCAGCAACCTGTCCAGCAGCAGCACCAGCTCCGGTTACCAC
AGTCTGCAGCACCATGGTTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5381#0      AATTGCCCCGAGGTGCAACTGTCCAGCAGCAGCACCAGCTCCGGTTACCACAGTCTGCAG 60
consensus_5381#1      ------------------------------------------------------------
                                                                                  

consensus_5381#0      CACCATGGTTCGCATCGTCTAATTAATCAATCCTTCCTGGAGCAGCACCACCCGACGCCC 120
consensus_5381#1      ------------------------------------------------------------
                                                                                  

consensus_5381#0      TCACAGTCGCAACAGCCATCGTTATCATCGTTCCCGCATCAACTGAAGCCATCGAACGAG 180
consensus_5381#1      ------------------------------------------------------------
                                                                                  

consensus_5381#0      CCGCTGCCGGCGCACGGGTTTGGTAATCACGCGCTGGCAGTCACGTCGCTGGAGTTCCTC 240
consensus_5381#1      ------------------------------------------------------------
                                                                                  

consensus_5381#0      AACGCGCACGACGTCGGTGTGATAATGGCCGGGTACAGCGACAGCACGATACGATTGTGG 300
consensus_5381#1      ------------------------------------------------------------
                                                                                  

consensus_5381#0      CGCCCGAAGGAGACGAGCGACGAAAACCAGCTGCTTTCGGCGTGGCACGGTTTGCTAGAT 360
consensus_5381#1      ------------------------------------------------------------
                                                                                  

consensus_5381#0      TTCAATACATCAAGCGCAGCCAAGGTAAGCTGTAGCGAGGCGGCACCGGCCGCCCACGGC 420
consensus_5381#1      -------------------------------------GCTCCGTTGAAGCCGATCGTGGG 23
                                                              * *     ****  *  ** 

consensus_5381#0      GGTCTGGTGC-TCGCATGGC--ACCAGCGCACACAAACGATAATGGCGGCGGGTGAAGCG 477
consensus_5381#1      GACTCAGTATATCGAATGGTCGGTCAGCTTCTTTGCCCAACCTTCGAAGCGTATGAA-CG 82
                      *     **   *** ****     ****         * *   * *  ***  **** **

consensus_5381#0      AAATACATACGCCTGTGGGATGCTGAGCGGGAGATGCGTATCTGTGATATTCCGAGCGGC 537
consensus_5381#1      AAGCGAAAGCGGCC--GGTACGGATCACAATTCGTACGAATTTCTCAT-CCGCAAATCGC 139
                      **    *  ** *   ** * *     *      * ** ** * * **    * *   **

consensus_5381#0      TCCGACACGGCCGTACTGAAGC-TGTCCTGCGCGCCGAACGGTATATTTGCGGCCGGGTT 596
consensus_5381#1      GCTGGTTGCGCAACAAAGAGGTACGAGCGGAGGGGCGTACGCAGCGCATGAAGGCGATCT 199
                       * *     **   *  ** *   *  * * * * ** ***       **  * **   *

consensus_5381#0      TTACGATGGCAGTGTGCGCATATTCGATCGCCGCTGTCCGCCAGCCGAGACGCGCTGCGC 656
consensus_5381#1      TTAAG-CGGCTAGATGTGCAAAGTTGGTC-CTGCCGTACGC-AGC----ATGCACCG-AC 251
                      *** *  ***    ** *** * * * ** * ** ** *** ***    * ** * *  *

consensus_5381#0      AACCATACGGGAGCACATTAACCCGGTGCTGGCGATCTGCCTGCGCGACGATTGCGAATC 716
consensus_5381#1      GTTCATCAAGCTAAATCCTTACGACGAACAAGTGGCTTTCGCATACAAGGATCGAGTCAT 311
                         ***   *    *   * **   *  *  * *   * *     * * *** * *    

consensus_5381#0      GCTAGTGACCGCCGATGTGTCGGCTAGCGTACGGCTCTACGATATAAGGAAAGCGTACTC 776
consensus_5381#1      CGTAGTGAATATGAGCACGGAAGTCA-CGCACACGCTAATGCCCCAACGACAATCGATT- 369
                        ******          *   *  * ** **      * *    ** ** *    * * 

consensus_5381#0      CTCCGTACAGAACTGGAGCGCCGGGACGGACGTGTCGGCGATGGCGATACACACGAGCGC 836
consensus_5381#1      -TACG-ACAGCTCCAGCA-ACCTGTCCAGCAGCAGCACCAGCTCCGGTTACCACAGTCTG 426
                       * ** ****  *  *    ** *  * *  *   *  *     ** *   ***   *  

consensus_5381#0      CGACATTCTCGCCTGTGCAACCAGCCAGATCGTCATCTACGGGCTGGACGGTGTGGTGCT 896
consensus_5381#1      CAGCACCATGGTTCG--------------------------------------------- 441
                      *  **   * *   *                                             

consensus_5381#0      TAGCTCGGGCC 907
consensus_5381#1      -----------