cluster # 5387

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Anopheles gambiae
cluster # 5387 cluster # 5387 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5387#0 length = 690 sequences # 3

consensus_5387#1 length = 534 sequences # 1

consensusID : consensus_5387#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 690
fasta sequence

                              [CCGGTGTTTCTTTGTGGCAATATGGATTTTGCCAAAAACATACTCCTAAAATATGGCTGGAAAGAAGGTGAAGGGCTCGGGAAAAACTCGGACGGCATTACGGCGCCGCTCAAAGCCAGTTTCAAGTTTAGCACTAGTGGAATTGGAGCCGACAAGGTCAGTGACGCTAAAAACAATTGGTGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTGAGGTTGAATCTGGCGGAAACACGAAAACCGAAGTGCCGGTTTCACTTCGGCAGGTAGATGCGGAAGCGGTTGAAATTACCACAAAGAGCTACTCGGTAAACAAACTGAAGCGAAAGGATATGGATCAGCAAGGTCCGAAAGGTTCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCCTGTTGGGAGGTCTTGGGCGCGAAGAAGACATGCCGGATCATGTTCGCACGGAGGATATCGAGTTTGCTCCCGTTAAAACTCTTACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAACGGCCCACAAAGGTGCTCGTCATGGACTGAAACTGAACGGCAAGTTGGCACGGATAGATGAACAGAACAATAAGCTCTTGCAGGAGTTGGAGAGCAGATCTTTCGAGGATGTGATAAAGTCTAGTGATTGGCAGGTACAGGCGTCTAAAAACGGGCGCCGAAAATCGAAAAAA]

[+] EMBL BM590174             [CCGGTGTTTCTTTGTGGCAATATGGATTTTGCCAAAAACATACTCCTAAAATATGGCTGGAAAGAAGGTGAAGGGCTCGGGAAAAACTCGGACGGCATTACGGCGCCGCTCAAAGCCAGTTTCAAGTTTAGCACTAGTGGAATTGGAGCCGACAAGGTCAGTGACGCTAAAAACAATTGGTGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTGAGGTTGAATCTGGCGGAAACACGAAAACCGAAGTGCCGGTTTCACTTCGGCAGGTAGATGCGGAAGCGGTTGAAATTACCACAAAGAGCTACTCGGTAAACAAACTGAAGCGAAAGGATATGGATCAGCAAGGTCCGAAAGGTTCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCCTGTTGGGAGGTCTTGGGCGCGAAGAAGACATGCCGGATCATGTTCGCACGGAGGATATCGAGTTTGCTCCCGTTAAAACTCTTACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAACGGCCCACAAAGGTGCTCGTCATGGACTGAAACTGAACGGCAAGTTGGCACGGATAGATGAACAGAACAATAAGCTCTTGCAGGAGTTGGAGAGCAGATCTTTCGAGGATGTGATAAAGTCTAGTGATTGGCAGGTACAGGCGTCTAAAAACGGGCGCCGAAAATCGAAAAAA]
[+] EMBL BM579712             [CCGGTGTTTCTTTGTGGCAATATGGATTTTGCCAAAAACATACTCCTAAAATATGGCTGGAAAGAAGGTGAAGGGCTCGGGAAAAACTCGGACGGCATTACGGCGCCGCTCAAAGCCAGTTTCAAGTTTAGCACTAGTGGAATTGGAGCCGACAAGGTCAGTGACGCTAAAAACAATTGGTGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTGAGGTTGAATCTGGCGGAAACACGAAAACCGAAGTGCCGGTTTCACTTCGGCAGGTAGATGCGGAAGCGGTTGAAATTACCACAAAGAGCTACTCGGTAAACAAACTGAAGCGAAAGGATATGGATCAGCAAGGTCCGAAAGGTTCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCCTGTTGGGAGGTCTTGGGCGCGAAGAAGACATGCCGGATCATGTTCGCACGGAGGATATCGAGTTTGCTCCCGTTAAAACTCTTACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAACGGCCCACAAAGGTGCTCGTCATGGACTGAAACTGAACGGCAAGTTGGCACGGATAGATGAACAGAACAATAAGCTCTTGCAGGAGTTGGAGAGCAGATCTTTCGAGGATGTGATAAAGTCTAGTGATTGGCAGGTACAGGCGTCTACAAACGGGCGCCG             ]
[+] EMBL BM588760             [                                                                                                                                              ccGGAGCCGACAAGGTCAGTGACGCTAAAAACAATTGGTGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTGAGGTTGAATCTGGCGGAAACACGAAAACCGAAGGGCCGGTTTCACTTCGGCAGGTAGATGCGGAAGCGGTTGAAATTACCACAAAGAGCTACTCGGTAAACAAACTGAAGCGGAAGGATATGGATCAGCAAGGTCCGAAAGGTTCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCCTGTTGGGAGGTCTTGGGCGCGAAGAAGACATGCCGGATCATGTTCGCACGGAGGATATCGAGTTTGCTCCCGTTAAAACTCTTACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAACGGCCCACAAAGGTGCTCGTCATGGACTGAAACTGAACGGCAAGTTAGCACGGATAGATGAACAGAACAATAAGCTCTTGCAGGAGTTGGAGAGCAGATCTTTCGAGGATGTGATAAAGTCTAGTGATTGGCAGGTACAGG                                ]




>consensus_5387#0
CCGGTGTTTCTTTGTGGCAATATGGATTTTGCCAAAAACATACTCCTAAAATATGGCTGG
AAAGAAGGTGAAGGGCTCGGGAAAAACTCGGACGGCATTACGGCGCCGCTCAAAGCCAGT
TTCAAGTTTAGCACTAGTGGAATTGGAGCCGACAAGGTCAGTGACGCTAAAAACAATTGG
TGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTGAGGTTGAATCTGGCGGAAACACG
AAAACCGAAGTGCCGGTTTCACTTCGGCAGGTAGATGCGGAAGCGGTTGAAATTACCACA
AAGAGCTACTCGGTAAACAAACTGAAGCGAAAGGATATGGATCAGCAAGGTCCGAAAGGT
TCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCCTGTTGGGAGGTCTTGGGCGCGAA
GAAGACATGCCGGATCATGTTCGCACGGAGGATATCGAGTTTGCTCCCGTTAAAACTCTT
ACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAACGGCCCACAAAGGTGCTCGTCAT
GGACTGAAACTGAACGGCAAGTTGGCACGGATAGATGAACAGAACAATAAGCTCTTGCAG
GAGTTGGAGAGCAGATCTTTCGAGGATGTGATAAAGTCTAGTGATTGGCAGGTACAGGCG
TCTAAAAACGGGCGCCGAAAATCGAAAAAA

consensusID : consensus_5387#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence

                              [GATCGCCCAGTAAATATGGCTGGAAAGAAGGTGAAGGGCTCGGGAAAAACTCGGACGGCATTACGGCGCCGCTCAAAGCCAGTTTCAAGTTTAGCACTAGTGGAATTGGAGCCGACAAGGTCAGTGACGCTAAAAACAATTGGTGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTGAGGTTGAATCTGGCGGAAACACGAAAACCGAAGTGCCGGTTTCACTTCGGCAGGTAGATGCGGAAGCGGTTGAAATTACCACAAAGAGCTACTCGGTAAACAAACTGAAGCGAAAGGATATGGATCAGCAAGGTCCGAAAGGTTCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCCTGTTGGGAGGTCTTGGGCGCGAAGAAGACATGCCGGATCATGTTCGCACGGAGGATATCGAGTTTGCTCCCGTTAAAACTCTTACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAACGGCCCACAAAGGTGCTCGTCATGGACTGAAACTGAACGGCAAGTTGGCACGGA]

[+] EMBL AL932666             [GATCGCCCAGTAAATATGGCTGGAAAGAAGGTGAAGGGCTCGGGAAAAACTCGGACGGCATTACGGCGCCGCTCAAAGCCAGTTTCAAGTTTAGCACTAGTGGAATTGGAGCCGACAAGGTCAGTGACGCTAAAAACAATTGGTGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTGAGGTTGAATCTGGCGGAAACACGAAAACCGAAGTGCCGGTTTCACTTCGGCAGGTAGATGCGGAAGCGGTTGAAATTACCACAAAGAGCTACTCGGTAAACAAACTGAAGCGAAAGGATATGGATCAGCAAGGTCCGAAAGGTTCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCCTGTTGGGAGGTCTTGGGCGCGAAGAAGACATGCCGGATCATGTTCGCACGGAGGATATCGAGTTTGCTCCCGTTAAAACTCTTACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAACGGCCCACAAAGGTGCTCGTCATGGACTGAAACTGAACGGCAAGTTGGCACGGA]




>consensus_5387#1
GATCGCCCAGTAAATATGGCTGGAAAGAAGGTGAAGGGCTCGGGAAAAACTCGGACGGCA
TTACGGCGCCGCTCAAAGCCAGTTTCAAGTTTAGCACTAGTGGAATTGGAGCCGACAAGG
TCAGTGACGCTAAAAACAATTGGTGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTG
AGGTTGAATCTGGCGGAAACACGAAAACCGAAGTGCCGGTTTCACTTCGGCAGGTAGATG
CGGAAGCGGTTGAAATTACCACAAAGAGCTACTCGGTAAACAAACTGAAGCGAAAGGATA
TGGATCAGCAAGGTCCGAAAGGTTCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCC
TGTTGGGAGGTCTTGGGCGCGAAGAAGACATGCCGGATCATGTTCGCACGGAGGATATCG
AGTTTGCTCCCGTTAAAACTCTTACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAA
CGGCCCACAAAGGTGCTCGTCATGGACTGAAACTGAACGGCAAGTTGGCACGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5387#0      CCGGTGTTTCTTTGTGGCAATATGGATTTTGCCAAAAACATACTCCTAAAATATGGCTGG 60
consensus_5387#1      -------------------------------------GATCGCCCAGTAAATATGGCTGG 23
                                                                * *   ************

consensus_5387#0      AAAGAAGGTGAAGGGCTCGGGAAAAACTCGGACGGCATTACGGCGCCGCTCAAAGCCAGT 120
consensus_5387#1      AAAGAAGGTGAAGGGCTCGGGAAAAACTCGGACGGCATTACGGCGCCGCTCAAAGCCAGT 83
                      ************************************************************

consensus_5387#0      TTCAAGTTTAGCACTAGTGGAATTGGAGCCGACAAGGTCAGTGACGCTAAAAACAATTGG 180
consensus_5387#1      TTCAAGTTTAGCACTAGTGGAATTGGAGCCGACAAGGTCAGTGACGCTAAAAACAATTGG 143
                      ************************************************************

consensus_5387#0      TGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTGAGGTTGAATCTGGCGGAAACACG 240
consensus_5387#1      TGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTGAGGTTGAATCTGGCGGAAACACG 203
                      ************************************************************

consensus_5387#0      AAAACCGAAGTGCCGGTTTCACTTCGGCAGGTAGATGCGGAAGCGGTTGAAATTACCACA 300
consensus_5387#1      AAAACCGAAGTGCCGGTTTCACTTCGGCAGGTAGATGCGGAAGCGGTTGAAATTACCACA 263
                      ************************************************************

consensus_5387#0      AAGAGCTACTCGGTAAACAAACTGAAGCGAAAGGATATGGATCAGCAAGGTCCGAAAGGT 360
consensus_5387#1      AAGAGCTACTCGGTAAACAAACTGAAGCGAAAGGATATGGATCAGCAAGGTCCGAAAGGT 323
                      ************************************************************

consensus_5387#0      TCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCCTGTTGGGAGGTCTTGGGCGCGAA 420
consensus_5387#1      TCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCCTGTTGGGAGGTCTTGGGCGCGAA 383
                      ************************************************************

consensus_5387#0      GAAGACATGCCGGATCATGTTCGCACGGAGGATATCGAGTTTGCTCCCGTTAAAACTCTT 480
consensus_5387#1      GAAGACATGCCGGATCATGTTCGCACGGAGGATATCGAGTTTGCTCCCGTTAAAACTCTT 443
                      ************************************************************

consensus_5387#0      ACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAACGGCCCACAAAGGTGCTCGTCAT 540
consensus_5387#1      ACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAACGGCCCACAAAGGTGCTCGTCAT 503
                      ************************************************************

consensus_5387#0      GGACTGAAACTGAACGGCAAGTTGGCACGGATAGATGAACAGAACAATAAGCTCTTGCAG 600
consensus_5387#1      GGACTGAAACTGAACGGCAAGTTGGCACGGA----------------------------- 534
                      *******************************                             

consensus_5387#0      GAGTTGGAGAGCAGATCTTTCGAGGATGTGATAAAGTCTAGTGATTGGCAGGTACAGGCG 660
consensus_5387#1      ------------------------------------------------------------
                                                                                  

consensus_5387#0      TCTAAAAACGGGCGCCGAAAATCGAAAAAA 690
consensus_5387#1      ------------------------------