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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 774 fasta sequence
[CTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTACTATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGTGCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGGGCAGTGCGGAAGATCCCAGATTGTTAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTATCTAAACATTTGCCCATCGCTCCTGCTGGACACGTGTTTTAGTTTTCGTTGCGCAAAAACAAAACAAAATGTGTTATGAAAATGGTGAACCGTTATAAAGCTTTTCTTAGCTTCCGTTTCGTGGATGTACAGAAAATGGCATCCCGTATTGACAGTATTGTTGCATGCATCGCGGTAAACTATAAAGAAATGGGCTAATAATAGAAGCCTAGCATAATGTCTCATAAATTGCTTCTTCTTCTGGTTTTGGCAACACCCAGCAACGAAACGACTTTGCAGACTATCTGCAGGCCATGACNCCCTATCTATTGCT]
[+] EMBL BX627667 [CTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTACTATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGTGCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGGGCAGTGCGGAAGATCCCAGATTGTTAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTATCTAAACATTTGCCCATCGCTCCTGCTGGACACGTGTTTTAGTTTTCGTTGCGCAAAAACAAAACAAAATGTGTTATGAAAATGGTGAACCGTTATAAAGCTTTTCTTAGCTTCCGTTTCGTGGATGTACAGAAAATGGCATCCCGTATTGACAGTATTGTTGCATGCATCGCGGTAAACTATAAAGAAATGGGCTAATAATAGAAGCCTAGCATAATGTCTCATAAATTGCTTCTTCTTCTGGTTTTGGCAACACCCAGCAACGAAACGACTTTGCAGACTATCTGCAGGCCATGACNCCCTATCTATTGCT]
consensusID : consensus_5388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 720 fasta sequence
[ACCAGGGCACGGGAAAAACCGAACAGTAGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAAGTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGTAGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGTGCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGGCAGTGCGGAAGATCCCAGATTGTTAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTATCTAAACATTTGCCCATCGCTCCTGCTGGACACG]
[+] EMBL BX611035 [ACCAGGGCACGGGAAAAACCGAACAGTAGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAAGTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGTAGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGTGCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGGCAGTGCGGAAGATCCCAGATTGTTAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTATCTAAACATTTGCCCATCGCTCCTGCTGGACACG]
[+] EMBL BX613182 [ AGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGT ]
consensusID : consensus_5388#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence
[AAAACAAAAAATATCTAATGATTGCGAGAGGCTACCAGGGCACGGGAAAAACCGAACAGTAGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAAGTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGTAGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGATCACACCGGAG]
[+] EMBL BX609493 [AAAACAAAAAATATCTAATGATTGCGAGAGGCTACCAGGGCACGGGAAAAACCGAACAGTAGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAAGTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGTAGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGATCACACCGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5388#1 ---------------------------------ACCAGGGCACGGGAAAAACCGAACAGT 27
consensus_5388#2 AAAACAAAAAATATCTAATGATTGCGAGAGGCTACCAGGGCACGGGAAAAACCGAACAGT 60
consensus_5388#0 ------------------------------------------------------------
consensus_5388#1 AGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAA 87
consensus_5388#2 AGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAA 120
consensus_5388#0 ------------------------------------------------------------
consensus_5388#1 GTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGT 147
consensus_5388#2 GTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGT 180
consensus_5388#0 ------------------------------------------------------------
consensus_5388#1 AGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAA 207
consensus_5388#2 AGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAA 240
consensus_5388#0 -----CTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAA 55
*******************************************************
consensus_5388#1 AATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTA 267
consensus_5388#2 AATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTA 300
consensus_5388#0 AATGGCTGTCAATCTTAGTTGTTAATCTACTATTAGCTTTAAGGGTAATGCAGTGCAGTA 115
***************************** ******************************
consensus_5388#1 AAGTGAAACATAAAACAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAA 327
consensus_5388#2 AAGTGAAACATAAAACAAAA---------------------------------------- 320
consensus_5388#0 AAGTGAAACATAAAACAAAAC--------------------------------------- 136
********************
consensus_5388#1 GGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAAAAATAGGAAAGTGCATAT 387
consensus_5388#2 --------------------------------------CAAAAAATAGGAAAGTGCATAT 342
consensus_5388#0 -----------------------------------AAACAAAAAATAGGAAAGTGCATAT 161
**********************
consensus_5388#1 ATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAG 447
consensus_5388#2 ATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAG 402
consensus_5388#0 ATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAG 221
************************************************************
consensus_5388#1 CATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATC 507
consensus_5388#2 CATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATC 462
consensus_5388#0 CATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATC 281
************************************************************
consensus_5388#1 TTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGT 567
consensus_5388#2 TTACTCAAACGTATGCGA--TCACACCGGAG----------------------------- 491
consensus_5388#0 TTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGT 341
****************** * * *
consensus_5388#1 GCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGG-CAGTGCGGAAGATCCCAGATTGT 626
consensus_5388#2 ------------------------------------------------------------
consensus_5388#0 GCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGGGCAGTGCGGAAGATCCCAGATTGT 401
consensus_5388#1 TAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTA 686
consensus_5388#2 ------------------------------------------------------------
consensus_5388#0 TAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTA 461
consensus_5388#1 TCTAAACATTTGCCCATCGCTCCTGCTGGACACG-------------------------- 720
consensus_5388#2 ------------------------------------------------------------
consensus_5388#0 TCTAAACATTTGCCCATCGCTCCTGCTGGACACGTGTTTTAGTTTTCGTTGCGCAAAAAC 521
consensus_5388#1 ------------------------------------------------------------
consensus_5388#2 ------------------------------------------------------------
consensus_5388#0 AAAACAAAATGTGTTATGAAAATGGTGAACCGTTATAAAGCTTTTCTTAGCTTCCGTTTC 581
consensus_5388#1 ------------------------------------------------------------
consensus_5388#2 ------------------------------------------------------------
consensus_5388#0 GTGGATGTACAGAAAATGGCATCCCGTATTGACAGTATTGTTGCATGCATCGCGGTAAAC 641
consensus_5388#1 ------------------------------------------------------------
consensus_5388#2 ------------------------------------------------------------
consensus_5388#0 TATAAAGAAATGGGCTAATAATAGAAGCCTAGCATAATGTCTCATAAATTGCTTCTTCTT 701
consensus_5388#1 ------------------------------------------------------------
consensus_5388#2 ------------------------------------------------------------
consensus_5388#0 CTGGTTTTGGCAACACCCAGCAACGAAACGACTTTGCAGACTATCTGCAGGCCATGACNC 761
consensus_5388#1 -------------
consensus_5388#2 -------------
consensus_5388#0 CCTATCTATTGCT 774
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||