cluster # 539

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Anopheles gambiae
cluster # 539 cluster # 539 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_539#0 length = 630 sequences # 1

consensus_539#1 length = 556 sequences # 1

consensusID : consensus_539#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 630
fasta sequence

                              [CCGCGGACGCGTGGGGTCTGATCGGAGTGAACTTCTTCTGGACGCTACTGATCATCCCGCTAACCCTTGCGAACATTCGGAGCGCATACATCATCGCAGTAATTGTGCTGCTTTCGCTGCTCTCCACCATCCTGACGTCCGTGCTTGGATACCAAGGTCAGCCACGCCGCTGGCTAGCCCTTCATCTAGCATTCCAGGTTCCCACCCTGCTGTGGGCAACCAAGTTTTACCATCTTCTGGTAAAGCTGTTCGTACCCATCACAGGACGTATGGGTGCCGGTACTAACCCCGAATATCTGATTGCCCTGTTGGTGGCTTGCTTTGGGCTTCTGTGTGTGAGCTATCTAGTGCCGCTGGTTGGACTGCTTAAAGGCACTTCCGAGCTAACCGCACGAATGACCGTATTCGCAATGATTGCGTTCCTGCTGGGATGCTGCACGCAGGTTGGCTTTCCGTACCGGGACGAAAGCAATGGGGGAACCGTCGGTTCAGCGTCATTACGTTACGCACACGCTCCAAGTGGCACATCGTGATGGGGCAGTCGTGTCCGAAGGTGCTGGTTTCCTGTTCCGTGAAATGGACCGCAATGGCGGTGCGCGTAAATACGTGGAGTGGCCAAACCGGGCCGAA]

[+] EMBL BM621955             [CCGCGGACGCGTGGGGTCTGATCGGAGTGAACTTCTTCTGGACGCTACTGATCATCCCGCTAACCCTTGCGAACATTCGGAGCGCATACATCATCGCAGTAATTGTGCTGCTTTCGCTGCTCTCCACCATCCTGACGTCCGTGCTTGGATACCAAGGTCAGCCACGCCGCTGGCTAGCCCTTCATCTAGCATTCCAGGTTCCCACCCTGCTGTGGGCAACCAAGTTTTACCATCTTCTGGTAAAGCTGTTCGTACCCATCACAGGACGTATGGGTGCCGGTACTAACCCCGAATATCTGATTGCCCTGTTGGTGGCTTGCTTTGGGCTTCTGTGTGTGAGCTATCTAGTGCCGCTGGTTGGACTGCTTAAAGGCACTTCCGAGCTAACCGCACGAATGACCGTATTCGCAATGATTGCGTTCCTGCTGGGATGCTGCACGCAGGTTGGCTTTCCGTACCGGGACGAAAGCAATGGGGGAACCGTCGGTTCAGCGTCATTACGTTACGCACACGCTCCAAGTGGCACATCGTGATGGGGCAGTCGTGTCCGAAGGTGCTGGTTTCCTGTTCCGTGAAATGGACCGCAATGGCGGTGCGCGTAAATACGTGGAGTGGCCAAACCGGGCCGAA]




>consensus_539#0
CCGCGGACGCGTGGGGTCTGATCGGAGTGAACTTCTTCTGGACGCTACTGATCATCCCGC
TAACCCTTGCGAACATTCGGAGCGCATACATCATCGCAGTAATTGTGCTGCTTTCGCTGC
TCTCCACCATCCTGACGTCCGTGCTTGGATACCAAGGTCAGCCACGCCGCTGGCTAGCCC
TTCATCTAGCATTCCAGGTTCCCACCCTGCTGTGGGCAACCAAGTTTTACCATCTTCTGG
TAAAGCTGTTCGTACCCATCACAGGACGTATGGGTGCCGGTACTAACCCCGAATATCTGA
TTGCCCTGTTGGTGGCTTGCTTTGGGCTTCTGTGTGTGAGCTATCTAGTGCCGCTGGTTG
GACTGCTTAAAGGCACTTCCGAGCTAACCGCACGAATGACCGTATTCGCAATGATTGCGT
TCCTGCTGGGATGCTGCACGCAGGTTGGCTTTCCGTACCGGGACGAAAGCAATGGGGGAA
CCGTCGGTTCAGCGTCATTACGTTACGCACACGCTCCAAGTGGCACATCGTGATGGGGCA
GTCGTGTCCGAAGGTGCTGGTTTCCTGTTCCGTGAAATGGACCGCAATGGCGGTGCGCGT
AAATACGTGGAGTGGCCAAACCGGGCCGAA

consensusID : consensus_539#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence

                              [GTCATCTTGATGCATTGCTTTGCGCATCGTTTATGCAGCCATTGGTTCAGCGATAACAAGTCCCCGCTCAACCTTACGCAAACGGTTCGTGCCCGTCTGATCGGAGTGAACCTCTTCTGGACGCTACTGATCATCCCGCTAACCCTTGCGAACATTCGGAGCGCATACATCATCGCAGTAATTGTGCTGCTTTCGCTGCTCTCCACCATCCTGACGTCCGTGCTTGGATACCAAGGTCAGCCACGCCGCTGGCTAGCCCTTCATCTAGCATTCCAGATTCCCACCCTGCTGTGGGCAACCAAGTTTTACCACCTTCTGGTAAAGCTGTTCGTACCCATCACAGGACGTATGGGTGCCGGTACTAACCCCGAATATCTGATTGCCCTGTTGGTGGCTTGCTTTGGCCTTCTGTGTGTGAGCTATCTAGTGCCGCTGGTTGGGCTGCTTAAAGGCACTTCCGAGCTAACCGCACGAATGACCGTATTCGCAATGATTGCGTTCCTGCTGGGATGCTGCACGCAGGTTGGCTTTCCGTACCGGGACGAAAGCAATGGGG]

[+] EMBL BX621570             [GTCATCTTGATGCATTGCTTTGCGCATCGTTTATGCAGCCATTGGTTCAGCGATAACAAGTCCCCGCTCAACCTTACGCAAACGGTTCGTGCCCGTCTGATCGGAGTGAACCTCTTCTGGACGCTACTGATCATCCCGCTAACCCTTGCGAACATTCGGAGCGCATACATCATCGCAGTAATTGTGCTGCTTTCGCTGCTCTCCACCATCCTGACGTCCGTGCTTGGATACCAAGGTCAGCCACGCCGCTGGCTAGCCCTTCATCTAGCATTCCAGATTCCCACCCTGCTGTGGGCAACCAAGTTTTACCACCTTCTGGTAAAGCTGTTCGTACCCATCACAGGACGTATGGGTGCCGGTACTAACCCCGAATATCTGATTGCCCTGTTGGTGGCTTGCTTTGGCCTTCTGTGTGTGAGCTATCTAGTGCCGCTGGTTGGGCTGCTTAAAGGCACTTCCGAGCTAACCGCACGAATGACCGTATTCGCAATGATTGCGTTCCTGCTGGGATGCTGCACGCAGGTTGGCTTTCCGTACCGGGACGAAAGCAATGGGG]




>consensus_539#1
GTCATCTTGATGCATTGCTTTGCGCATCGTTTATGCAGCCATTGGTTCAGCGATAACAAG
TCCCCGCTCAACCTTACGCAAACGGTTCGTGCCCGTCTGATCGGAGTGAACCTCTTCTGG
ACGCTACTGATCATCCCGCTAACCCTTGCGAACATTCGGAGCGCATACATCATCGCAGTA
ATTGTGCTGCTTTCGCTGCTCTCCACCATCCTGACGTCCGTGCTTGGATACCAAGGTCAG
CCACGCCGCTGGCTAGCCCTTCATCTAGCATTCCAGATTCCCACCCTGCTGTGGGCAACC
AAGTTTTACCACCTTCTGGTAAAGCTGTTCGTACCCATCACAGGACGTATGGGTGCCGGT
ACTAACCCCGAATATCTGATTGCCCTGTTGGTGGCTTGCTTTGGCCTTCTGTGTGTGAGC
TATCTAGTGCCGCTGGTTGGGCTGCTTAAAGGCACTTCCGAGCTAACCGCACGAATGACC
GTATTCGCAATGATTGCGTTCCTGCTGGGATGCTGCACGCAGGTTGGCTTTCCGTACCGG
GACGAAAGCAATGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_539#0      ------------------------------------------------------------
consensus_539#1      GTCATCTTGATGCATTGCTTTGCGCATCGTTTATGCAGCCATTGGTTCAGCGATAACAAG 60
                                                                                 

consensus_539#0      ---------------CCGCGGACG---CGTGGG-GTCTGATCGGAGTGAACTTCTTCTGG 41
consensus_539#1      TCCCCGCTCAACCTTACGCAAACGGTTCGTGCCCGTCTGATCGGAGTGAACCTCTTCTGG 120
                                     ***  ***   ****   ***************** ********

consensus_539#0      ACGCTACTGATCATCCCGCTAACCCTTGCGAACATTCGGAGCGCATACATCATCGCAGTA 101
consensus_539#1      ACGCTACTGATCATCCCGCTAACCCTTGCGAACATTCGGAGCGCATACATCATCGCAGTA 180
                     ************************************************************

consensus_539#0      ATTGTGCTGCTTTCGCTGCTCTCCACCATCCTGACGTCCGTGCTTGGATACCAAGGTCAG 161
consensus_539#1      ATTGTGCTGCTTTCGCTGCTCTCCACCATCCTGACGTCCGTGCTTGGATACCAAGGTCAG 240
                     ************************************************************

consensus_539#0      CCACGCCGCTGGCTAGCCCTTCATCTAGCATTCCAGGTTCCCACCCTGCTGTGGGCAACC 221
consensus_539#1      CCACGCCGCTGGCTAGCCCTTCATCTAGCATTCCAGATTCCCACCCTGCTGTGGGCAACC 300
                     ************************************ ***********************

consensus_539#0      AAGTTTTACCATCTTCTGGTAAAGCTGTTCGTACCCATCACAGGACGTATGGGTGCCGGT 281
consensus_539#1      AAGTTTTACCACCTTCTGGTAAAGCTGTTCGTACCCATCACAGGACGTATGGGTGCCGGT 360
                     *********** ************************************************

consensus_539#0      ACTAACCCCGAATATCTGATTGCCCTGTTGGTGGCTTGCTTTGGGCTTCTGTGTGTGAGC 341
consensus_539#1      ACTAACCCCGAATATCTGATTGCCCTGTTGGTGGCTTGCTTTGGCCTTCTGTGTGTGAGC 420
                     ******************************************** ***************

consensus_539#0      TATCTAGTGCCGCTGGTTGGACTGCTTAAAGGCACTTCCGAGCTAACCGCACGAATGACC 401
consensus_539#1      TATCTAGTGCCGCTGGTTGGGCTGCTTAAAGGCACTTCCGAGCTAACCGCACGAATGACC 480
                     ******************** ***************************************

consensus_539#0      GTATTCGCAATGATTGCGTTCCTGCTGGGATGCTGCACGCAGGTTGGCTTTCCGTACCGG 461
consensus_539#1      GTATTCGCAATGATTGCGTTCCTGCTGGGATGCTGCACGCAGGTTGGCTTTCCGTACCGG 540
                     ************************************************************

consensus_539#0      GACGAAAGCAATGGGGGAACCGTCGGTTCAGCGTCATTACGTTACGCACACGCTCCAAGT 521
consensus_539#1      GACGAAAGCAATGGGG-------------------------------------------- 556
                     ****************                                            

consensus_539#0      GGCACATCGTGATGGGGCAGTCGTGTCCGAAGGTGCTGGTTTCCTGTTCCGTGAAATGGA 581
consensus_539#1      ------------------------------------------------------------
                                                                                 

consensus_539#0      CCGCAATGGCGGTGCGCGTAAATACGTGGAGTGGCCAAACCGGGCCGAA 630
consensus_539#1      -------------------------------------------------