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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5397#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1511 fasta sequence
[TCATTTGTGACACATGTCTTAGCGTAACATATTCACGGTCTCCTAGTTGCGCCTCGCTGTATCTCCTCTAACCATTTCACGGTAGATATAAATCAATGCTTTTGCTGCGATACAATTATTATAAAATGTAACGTTAACTGCTGTGCTATAATCCGCAGCGACGGAAGATCATTACGACTGTTTTTTTTTGCACGTTTACGGGACACATTGGAGCTTCCCATTGCTCAGCCCTTCGGCCCGTCTGAAAGCTTACACACTATTGCTACGATCGGTGTGAAATATTATGCTGTGTAGAAAAAAAAAACATTTTCAATTACATACCGCCATGGGTTAGTATTTCATTAGAGGGTCCTCTCTCCTTTCGCACGTTTCGCAGCGTGCAGCCAGCGTTGTTTAGCGAGAGAGCCCACATTGTGACACCGTAACGCTGCAGCTTCATTGAACGTTAATAATATGCACGTAAATATGGATTCACGCAATGTCCTGCTAGCGTACTGTGATTTATGATGTTGGATAAGACACCCCACCGCTCTGGTAGCCGCTTACGTGTGGCTACATTGTTATTTTTCCATATTTTTTTTACTATTGATACCATTGGAGTTTGATGTTTCTGCTTCAGTTTTCGTCCGCTACAAACGTTCTTAACAAAAATATTCCTACTATTTGAAGCGTCTTACGGTTAAGTCTTCCACGCGCTACACTACCTTGGGGGTGCATTTTGATCCTTTCGGTTTTGTCTTTTTGTTTGTTGGTTGTTGTTGTTGCAGTTGTTGTTGAAGAGTGATTTATGATCATAAGTCGTATGACTTAGTTTACGTAGAACACAATTGTGTCGAGATGACAATTGTGTTTTGGTCACAGTTTCTGCTTCTTCTTCGCCTGGTCACAATTATCATCCAGCTGCAGGACACTGGGATGAGTTGATCAGGGTGTTTGCAGTCGAAGCATCGTTAGTTTGTGCTGCAGTTCCTACTCAAACTCATTGTCGTGCCAGTCCACTCTGGCCCATTCTGGCAGCTCAGTTTCATACTCCCAGCCAGGGCCTCTTGTACTTCCAGGCGTGCAGATACATGACCAGATCTGCGGTTTCGGATCTCGGTAGCGCACTTTGCATTCGTAGCAGTGCTTGTCGGTTGTCATTTTATCTGGATTAAAGGCTAAGTCGGGCGATTCGTGTCCTGTTTGGGTGGCCACGGTAACATTAACACCGGCAACATCGGCGGCTACAGCAGTACCAGTGGTAGTGGTAGCAGACACAGCAACAGCAGCAGTAGCAGTAACAGCAGCAGCAACGGCACTGGTCGTAGTGGCTGCAGTAGCACTGGTTGGTGCTGCCACCAATTTGTTGCACTCTTCGAATGCTCCTGCCGCTCCTGCCGGATCTTCATCAACCTGTGCGGTGGGTGCGACTGCCGAGGTAGGAGACGGAGTGGCAGTGGCACGCTTGGTGCATTCCCAAGATGGTTTAGGCTTTTGACTGATATGCTCCGCATAAACTATCGCTCTGCACC]
[+] EMBL CNS08IDS [TCATTTGTGACACATGTCTTAGCGTAACATATTCACGGTCTCCTAGTTGCGCCTCGCTGTATCTCCTCTAACCATTTCACGGTAGATATAAATCAATGCTTTTGCTGCGATACAATTATTATAAAATGTAACGTTAACTGCTGTGCTATAATCCGCAGCGACGGAAGATCATTACGACTGTTTTTTTTTGCACGTTTACGGGACACATTGGAGCTTCCCATTGCTCAGCCCTTCGGCCCGTCTGAAAGCTTACACACTATTGCTACGATCGGTGTGAAATATTATGCTGTGTAGAAAAAAAAAACATTTTCAATTACATACCGCCATGGGTTAGTATTTCATTAGAGGGTCCTCTCTCCTTTCGCACGTTTCGCAGCGTGCAGCCAGCGTTGTTTAGCGAGAGAGCCCACATTGTGACACCGTAACGCTGCAGCTTCATTGAACGTTAATAATATGCACGTAAATATGGATTCACGCAATGTCCTGCTAGCGTACTGTGATTTATGATGTTGGATAAGACACCCCACCGCTCTGGTAGCCGCTTACGTGTGGCTACATTGTTATTTTTCCATATTTTTTTTACTATTGATACCATTGGAGTTTGATGTTTCTGCTTCAGTTTTCGTCCGCTACAAACGTTCTTAACAAAAATATTCCTACTATTTGAAGCGTCTTACGGTTAAGTCTTCCACGCGCTACACTACCTTGGGGGTGCATTTTGATCCTTTCGGTTTTGTCTTTTTGTTTGTTGGTTGTTGTTGTTGCAGTTGTTGTTGAAGAGTGATTTATGATCATAAGTCGTATGACTTAGTTTACGTAGAACACAATTGTGTCGAGATGACAATTGTGTTTTGGTCACAGTTTCTGCTTCTTCTTCGCCTGGTCACAATTATCATCCAGCTGCAGGACACTGGGATGAGTTGATCAGGGTGTTTGCAGTCGAAGCATCGTTAGTTTGTGCTGCAGTTCCTACTCAAACTCATTGTCGTGCCAGTCCACTCTGGC ]
[-] EMBL CNS08IDR [ GCTCTGGTAGCCGCTTACGTGTGGCTACATTGTTATTTTTCCATATTTTTTTTACTATTGATACCATTGGAGTTTGATGTTTCTGCTTCAGTTTTCGTCCGCTACAAACGTTCTTAACAAAAATATTCCTACTATTTGAAGCGTCTTACGGTTAAGTCTTCCACGCGCTACACTACCTTGGGGGTGCATTTTGATCCTTTCGGTTTTGTCTTTTTGTTTGTTGGTTGTTGTTGTTGCAGTTGTTGTTGAAGAGTGATTTATGATCATAAGTCGTATGACCTAGTTTACGTAGAACACAATTGTGTCGAGATGACAATTGTGTTTTGGTCACAGTTTCTGCTTCTTCTTCGCCTGGTCACAATTATCATCCAGCTGCAGGACACTGGGATGAGTTGATCAGGGTGTTTGCAGTCGAAGCATCGTTAGTTTGTGCTGCAGTTCCTACTCAAACTCATTGTCGTGCCAGTCCACTCTGGCCCATTCTGGCAGCTCAGTTTCATACTCCCAGCCAGGGCCTCTTGTACTTCCAGGCGTGCAGATACATGACCAGATCTGCGGTTTCGGATCTCGGTAGCGCACTTTGCATTCGTAGCAGTGCTTGTCGGTTGTCATTTTATCTGGATTAAAGGCTAAGTCGGGCGATTCGTGTCCTGTTTGGGTGGCCACGGTAACATTAACACCGGCAACATCGGCGGCTACAGCAGTACCAGTGGTAGTGGTAGCAGACACAGCAACAGCAGCAGTAGCAGTAACAGCAGCAGCAACGGCACTGGTCGTAGTGGCTGCAGTAGCACTGGTTGGTGCTGCCACCAATTTGTTGCACTCTTCGAATGCTCCTGCCGCTCCTGCCGGATCTTCATCAACCTGTGCGGTGGGTGCGACTGCCGAGGTAGGAGACGGAGTGGCAGTGGCACGCTTGGTGCATTCCCAAGATGGTTTAGGCTTTTGACTGATATGCTCCGCATAAACTATCGCTCTGCACC]
consensusID : consensus_5397#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence
[CCCGAGTTTACCTGCTCGGAAAGCCACGGCCGTGTCGCTGGGCAGCGAAAGCCCCCATGAGAATATGTGCGCCTCGATGCTGGTCCCGAATGCGCTGAACGCAGTCAGCAGTACTGGAATCAGCACGACCGTTAGCACTGGCAGCGGCAACATGGTGCCTGCCAGCGCCGGTCTACCACCTAACACCATCCTCTGCAAGCCTGGAATTGCCAGTCCCAGGAAAGGGTTAACCCGGTGGGGCCCTAACGCCCCCCGAAGAAGTAAACCCCAATGGCTGGGGAACCTAAAAGGGGGAAACAATAGTTTCCTGGGCCGCCCCTGGTAAAGCCTTTTTTGCGAGGCCGCCTTCTTACTTATAATTCCCCTAAGAGGAATTACTACTAAGACTTTGAANCGATAAGCCCTGAACAAGGCACTGCTACGAATGCAAAGTGCGCTACCGAGATCCGAAACCGCAGGATCTGGTCATGTATCTGCACGCCTGGAAGTACAAG]
[+] EMBL AL932801 [CCCGAGTTTACCTGCTCGGAAAGCCACGGCCGTGTCGCTGGGCAGCGAAAGCCCCCATGAGAATATGTGCGCCTCGATGCTGGTCCCGAATGCGCTGAACGCAGTCAGCAGTACTGGAATCAGCACGACCGTTAGCACTGGCAGCGGCAACATGGTGCCTGCCAGCGCCGGTCTACCACCTAACACCATCCTCTGCAAGCCTGGAATTGCCAGTCCCAGGAAAGGGTTAACCCGGTGGGGCCCTAACGCCCCCCGAAGAAGTAAACCCCAATGGCTGGGGAACCTAAAAGGGGGAAACAATAGTTTCCTGGGCCGCCCCTGGTAAAGCCTTTTTTGCGAGGCCGCCTTCTTACTTATAATTCCCCTAAGAGGAATTACTACTAAGACTTTGAANCGATAAGCCCTGAACAAGGCACTGCTACGAATGCAAAGTGCGCTACCGAGATCCGAAACCGCAGGATCTGGTCATGTATCTGCACGCCTGGAAGTACAAG]
consensusID : consensus_5397#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence
[GGATCTCGGTAGCGCACTTTGCATTCGTAGCAGTGCTTGTCGGTTGTCATTTTATCTGGATTAAAGGCTAAGTCGGGCGATTCGTGTCCTGTTTGGGTGGCCACGGTAACACTGATATGCCCCCAAAACTATCGCTCAGCACCTATGGAGCACCTGCTGGCACAGGCAACGCACAAGACGTTAATTTACGTCTAATTAACATCAATGATTTCACTTTTCCGCGACGTTTCTATTTGCACAAGCTGAATAAACATCATTATAATTCGTGCGTTTGACGCCTGTAGCAAAGATAAGAAATACACGCCCGTGTATGCGTACTTACGCCAGTACGCGCGG]
[-] EMBL BM585515 [GGATCTCGGTAGCGCACTTTGCATTCGTAGCAGTGCTTGTCGGTTGTCATTTTATCTGGATTAAAGGCTAAGTCGGGCGATTCGTGTCCTGTTTGGGTGGCCACGGTAACACTGATATGCCCCCAAAACTATCGCTCAGCACCTATGGAGCACCTGCTGGCACAGGCAACGCACAAGACGTTAATTTACGTCTAATTAACATCAATGATTTCACTTTTCCGCGACGTTTCTATTTGCACAAGCTGAATAAACATCATTATAATTCGTGCGTTTGACGCCTGTAGCAAAGATAAGAAATACACGCCCGTGTATGCGTACTTACGCCAGTACGCGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5397#0 TCATTTGTGACACATGTCTTAGCGTAACATATTCACGGTCTCCTAGTTGCGCCTCGCTGT 60
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 ------------------------------------------------------------
consensus_5397#0 ATCTCCTCTAACCATTTCACGGTAGATATAAATCAATGCTTTTGCTGCGATACAATTATT 120
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 ------------------------------------------------------------
consensus_5397#0 ATAAAATGTAACGTTAACTGCTGTGCTATAATCCGCAGCGACGGAAGATCATTACGACTG 180
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 ------------------------------------------------------------
consensus_5397#0 TTTTTTTTTGCACGTTTACGGGACACATTGGAGCTTCCCATTGCTCAGCCCTTCGGCCCG 240
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 ------------------------------------------------------------
consensus_5397#0 TCTGAAAGCTTACACACTATTGCTACGATCGGTGTGAAATATTATGCTGTGTAGAAAAAA 300
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 ------------------------------------------------------------
consensus_5397#0 AAAACATTTTCAATTACATACCGCCATGGGTTAGTATTTCATTAGAGGGTCCTCTCTCCT 360
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 ------------------------------------------------------------
consensus_5397#0 TTCGCACGTTTCGCAGCGTGCAGCCAGCGTTGTTTAGCGAGAGAGCCCACATTGTGACAC 420
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 ------------------------------------------------------------
consensus_5397#0 CGTAACGCTGCAGCTTCATTGAACGTTAATAATATGCACGTAAATATGGATTCACGCAAT 480
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 ------------------------------------------------------------
consensus_5397#0 GTCCTGCTAGCGTACTGTGATTTATGATGTTGGATAAGACACCCCACCGCTCTGGTAGCC 540
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 ------------------------------------------------------------
consensus_5397#0 GCTTACGTGTGGCTACATTGTTATTTTTCCATATTTTTTTTACTATTGATACCATTGGAG 600
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 ------------------------------------------------------------
consensus_5397#0 TTTGATGTTTCTGCTTCAGTTTTCGTCCGCTACAAACGTTCTTAACAAAAATATTCCTAC 660
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 ------------------------------------------------------------
consensus_5397#0 TATTTGAAGCGTCTTACGGTTAAGTCTTCCACGCGCTACACTACCTTGGGGGTGCATTTT 720
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 ------------------------------------------------------------
consensus_5397#0 GATCCTTTCGGTTTTGTCTTTTTGTTTGTTGGTTGTTGTTGTTGCAGTTGTTGTTGAAGA 780
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 ------------------------------------------------------------
consensus_5397#0 GTGATTTATGATCATAAGTCGTATGACTTAGTTTACGTAGAACACAATTGTGTCGAGATG 840
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 ------------------------------------------------------------
consensus_5397#0 ACAATTGTGTTTTGGTCACAGTTTCTGCTTCTTCTTCGCCTGGTCACAATTATCATCCAG 900
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 ------------------------------------------------------------
consensus_5397#0 CTGCAGGACACTGGGATGAGTTGATCAGGGTGTTTGCAGTCGAAGCATCGTTAGTTTGTG 960
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 ------------------------------------------------------------
consensus_5397#0 CTGCAGTTCCTACTCAAACTCATTGTCGTGCCAGTCCACTCTGGCCCATTCTGGCAGCTC 1020
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 ------------CCCGAGTTTACCTGCTCGGAAAGCCACGGCCGTGTCGCTGGGCAGCGA 48
consensus_5397#0 AGTTTCATACTCCCAGCCAGGGCCTCTTGTACTTCCAGGCGTGCAGATACATGACCAGAT 1080
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 AAGCCCCCATGAGAATATGTGCGCCTCGATGCT---GGTCCCGAATGCGCTGAACGCAGT 105
consensus_5397#0 CTGCGGTTTCGGATCTCGGTAGCGCACTTTGCATTCGTAGCAGTG-CTTGTCGGTTGTCA 1139
consensus_5397#2 ----------GGATCTCGGTAGCGCACTTTGCATTCGTAGCAGTG-CTTGTCGGTTGTCA 49
consensus_5397#1 CAGCAGTACTGGAA-TCAGCACGACCGTTAGCACTGGCAGCGGCAACATGGTGCCTGCCA 164
*** ** * * * ** *** * * *** * * ** * ** **
consensus_5397#0 TTTTATCTGGATTAAAGGCTAA-GTCGGGCGATTCGTGTCCTGTTTGGGTGGCCACGGTA 1198
consensus_5397#2 TTTTATCTGGATTAAAGGCTAA-GTCGGGCGATTCGTGTCCTGTTTGGGTGGCCACGGTA 108
consensus_5397#1 GCG---CCGGTCTACCACCTAACACCATCCTCTGCAAGCCTGGAATTGCCAGTCCCAGGA 221
* ** ** **** * * * * * * * * * * * * * *
consensus_5397#0 ACATTAACA--CCGGCAACA-------TCGGCGGCTACAGCAGTA---CCAG-TGGTAGT 1245
consensus_5397#2 ACACTGATATGCCCCCAAAACTATCGCTCAGCACCTATGG-AGCA---CCTGCTGGCACA 164
consensus_5397#1 A-AGGGTTAACCCGGTGGGGCCCTA--ACGCCCCCCGAAGAAGTAAACCCCAATGGCTGG 278
* * * ** * * * * ** * ** ***
consensus_5397#0 GGTAGCAGACACAGCAACAGCAGCAGTAGCAGTAACAGCAGCAGCAACGGCACTGGT-CG 1304
consensus_5397#2 GGCAACGCACAAGACGTTAATTTACGTCTAATTAACATCAATGATTTCACTTTT--C-CG 221
consensus_5397#1 GGAACCTAAAAGGGGGAAACAATAGTTTCCTGGGCCGCCCCTGGTAAAGCCTTTTTTGCG 338
** * * * * * * * * * **
consensus_5397#0 TAGTGGCTGCAGTAGCACTGGTTGGTGCTGCCACCAATTTGTTGCACTCTTCGAATGCTC 1364
consensus_5397#2 CGACGTTTCTATTTGCACAAGCTGA-ATAAACATCATTATAATTCGTGCGTTTGACGCCT 280
consensus_5397#1 AGGCCGCCTTCTTACTTATAATTCCCCTAAGAGGAATTACTACTAAGACTTTGAANCGAT 398
* * * * * * *
consensus_5397#0 CTGCCGCTCCTGCCGGATCTTCATCAACCT---GTGCGGTGGGTGCGACTGCCGAGGTAG 1421
consensus_5397#2 GTAGCAAAGATAAGAAATACACGCCCGTGT---ATGCG-TACTTACGCCAGTACGCGCGG 336
consensus_5397#1 AAGCCCTGAACAAGGCACTGCTACGAATGCAAAGTGCGCTACCGAGATCCGAAACCGCAG 458
* * **** * * * * *
consensus_5397#0 GAGACGGAGTGGCAGTGGCACGCTTGGTGCATTCCCAAGATGGTTTAGGCTTTTGACTGA 1481
consensus_5397#2 ------------------------------------------------------------
consensus_5397#1 GATCTGGTCATGTATCTGCACGCCTGGAAGTACAAG------------------------ 494
consensus_5397#0 TATGCTCCGCATAAACTATCGCTCTGCACC 1511
consensus_5397#2 ------------------------------
consensus_5397#1 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||