|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5409#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1194 fasta sequence
[CCGCAACAACCGGAGTACCAGCAACCAGCTTCAATGTACTACCAGCAACAACCCGTACAATACGCACAACCGCCAGCAGCGTACTCACCGTACAACGAGCAGCAGTACAACCGTCGGCCACGACCGGAAACATCTTCGTCATCCCCAGGCTTCTTGGATACGATTGCCCGAGCGTTCGGTTTAAACGCGGGAACCAACTCTAGAGCTCCGCGGCCTGCTACGACCTCCTCCTCGTCTGGGCTGGGGCTTTTGGGGATGGCACTTGGGCTAGGATAGAGAACCCGCAGTTTCGCCACGTAGGGTAACTGTACCAGTTTTCGGCAGTGTACCTATTTTCGGCAGGGTAGCTAAAAACGTGAAATTCTGCACAAATGCGGTAAAAAAATTCACAAAATACAATTTTGTAGTGAAAGTGTACTTATTTGATATTCACATACGAAGTTTCACACCATTTCATTTCGTATTTTCCAAAATATCAAATAAATTGTGCTTTTTTTCGGCAGCTTTGCTGTCAGCCAATCGTTCGGCAGGTTTTGTGATTAAGAGAATCAGAACAGTAAAACAGTG-AAAAAGTGGTGTATATTAAAGATTTTATGCTTATTTAATTTATTCTAACTTGTTCGGAATTTTAAAATCACGATAAACAGGTTATTTTTCACTTTAAATGCTGCCGAAAATAGGTACACAGTAAATGTTCATTTTTGACAGCTCAATTTTGTGGGCTCCTGCCGAAACTCGGAACAATAACACACCTTGGATTTGGCCGAATATTTCCAGCCTGATATGTAACGGTTAAACGCTTTCAACCCTGTCAGTTCATACCAGACTAACTGGGTACCAAACAATGCTCGCGTATTCTAAAGCAGGTTAGACTGAGCTACAGTAAATGGTTTTGAGGCAATAGGGTAATGCAAATCATGCATCATCAATGATTCCGACCCACAAGTGGAGCGGGTGTGCTAGATCGGAGTCGGAAACAAATCCGACCCTACCTCGGGGACCTACTACCGTAAGGACTTCAAGTTGACTCGAATGATAAGTAGTTGTAAGAAAGCATAAACGACTCCGACCCACTGGTGCAGCGAGTTTGGGTCAGGTCAAAGTAGGTTTAATACTCGACCCGTACTCGCTGCACCAATGGGCCGGAATCGCTTATGCTTTAGGATTCGTATCTACCGAAATCGTTGCACATAC]
[+] EMBL BM593454 [CCGCAACAACCGGAGTACCAGCAACCAGCTTCAATGTACTACCAGCAACAACCCGTACAATACGCACAACCGCCAGCAGCGTACTCACCGTACAACGAGCAGCAGTACAACCGTCGGCCACGACCGGAAACATCTTCGTCATCCCCAGGCTTCTTGGATACGATTGCCCGAGCGTTCGGTTTAAACGCGGGAACCAACTCTAGAGCTCCGCGGCCTGCTACGACCTCCTCCTCGTCTGGGCTGGGGCTTTTGGGGATGGCACTTGGGCTAGGATAGAGAACCCGCAGTTTCGCCACGTAGGGTAACTGTACCAGTTTTCGGCAGTGTACCTATTTTCGGCAGGGTAGCTAAAAACGTGAAATTCTGCACAAATGCGGTAAAAAAATTCACAAAATACAATTTTGTAGTGAAAGTGTACTTATTTGATATTCACATACGAAGTTTCACACCATTTCATTTCGTATTTTCCAAAATATCAAATAAATTGTGCTTTTTTTCGGCAGCTTTGCTGTCAGCCAATCGTTCGGCAGGTTTTGTGATTAAGAGAATCAGAACAGTAAAACAGTG AAAAAGTGGTGTATATTAAAGATTTTATGCTTATTTAATTTATTCTAACTTGTTCGGAATTTTAAAATCACGATAAACAGGTTATTTTTCACTTTAAATGCTGCCGAAAATAGGTACACAGTAAATGTTCATTT ]
[+] EMBL BX610925 [ AGAACAGTAAAACAATGAAAAAAGTGGTACATATTAAAGATTTTATGCTTATTTAATTTATTCAAACTTGTTCGGAATTCTAAAATCACGATAAACAAGTTATTTTTCACTTTAAATGCTGCCGAAAATAGGTACACAGTAAATGTTCAGTTTTGACAGCTCAATTTTGTGGGCTCCTGCCGAAACTCGGAACAATAACACACCTTGGATTTGGCCGAATATTTCCAGCCTGATATGTAACGGTTAAACGCTTTCAACCCTGTCAGTTCATACCAGACTAACTGGGTACCAAACAATGCTCGCGTATTCTAAAGCAGGTTAGACTGAGCTACAGTAAATGGTTTTGAGGCAATAGGGTAATGCAAATCATGCATCATCAATGATTCCGACCCACAAGTGGAGCGGGTGTGCTAGATCGGAGTCGGAAACAAATCCGACCCTACCTCGGGGACCTACTACCGTAAGGACTTCAAGTTGACTCGAATGATAAGTAGTTGTAAGAAAGCATAAACGACTCCGACCCACTGGTGCAGCGAGTTTGGGTCAGGTCAAAGTAGGTTTAATACTCGACCCGTACTCGCTGCACCAATGGGCCGGAATCGCTTATGCTTTAGGATTCGTATCTACCGAAATCGTTGCACATAC]
consensusID : consensus_5409#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence
[TTTTCACCGCATTGTGTGCACTTTAGAGGGTTTGTGCAATTCTCATGAAAGTTTTCTCCACATTTGGCGCAAATTTTTTGTCGATTGCAATTAGGGTAACTGTACCAGTTTTCGGCAGTGTACCTATTTTCGGCATGGTAGCTAAAAACGTGAAATTCTTCACAAATGCGGTAAAAAATTTCACAAAATACAATTTTGTAGTGAAGGTGTACTTATTTGATATTCACATACGAAGTTTCACACCATTTCATTACGTATTTTCCAAAATATCAAATAAATTGTGCTTTTTTCGGCAGCTTTGCTGTCAGCCAATCATTCGGCAGGTTTTGTGATTAAGAGAATCAGAACAGTAAAACAATGATAAAGTGGTGTATATTAAAGATTTTATGCTTATTTAATTTATTCTAACTTGTTCGGAATTTTAAAATCACGATAAACAGGTTATTTTTCACTTTAAATGCTGCCGAAAATAGGTACACAGTAAATTTTCATTTTTGACAGCTCAATGTTGTGGGCTCCTGCTGAAACTCGGAACCATAACACACTTTGAATTTGGCTGAATATTCCTTTTAAAATTGATCAGAACACTACAATGCGTATGGCGACACATAATATAACCTTTCTTGTACCAAATATCACCAATTTTTCGACAAACAATGCACTAACTTAAGAGAAAAATAAATATTTGTAAGCCAGTTTGCACCGTACG]
[+] EMBL BX609276 [TTTTCACCGCATTGTGTGCACTTTAGAGGGTTTGTGCAATTCTCATGAAAGTTTTCTCCACATTTGGCGCAAATTTTTTGTCGATTGCAATTAGGGTAACTGTACCAGTTTTCGGCAGTGTACCTATTTTCGGCATGGTAGCTAAAAACGTGAAATTCTTCACAAATGCGGTAAAAAATTTCACAAAATACAATTTTGTAGTGAAGGTGTACTTATTTGATATTCACATACGAAGTTTCACACCATTTCATTACGTATTTTCCAAAATATCAAATAAATTGTGCTTTTTTCGGCAGCTTTGCTGTCAGCCAATCATTCGGCAGGTTTTGTGATTAAGAGAATCAGAACAGTAAAACAATGATAAAGTGGTGTATATTAAAGATTTTATGCTTATTTAATTTATTCTAACTTGTTCGGAATTTTAAAATCACGATAAACAGGTTATTTTTCACTTTAAATGCTGCCGAAAATAGGTACACAGTAAATTTTCATTTTTGACAGCTCAATGTTGTGGGCTCCTGCTGAAACTCGGAACCATAACACACTTTGAATTTGGCTGAATATTCCTTTTAAAATTGATCAGAACACTACAATGCGTATGGCGACACATAATATAACCTTTCTTGTACCAAATATCACCAATTTTTCGACAAACAATGCACTAACTTAAGAGAAAAATAAATATTTGTAAGCCAGTTTGCACCGTACG]
consensusID : consensus_5409#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence
[GCAAATCCCCCACGGTTAATTCCGCGTACGTCANTCNCCTATTTTACGCGCTAAATATAACTAATNTCCCGTGTAATNTTGCAAGCAGGGGATGGTTTTAGCCACTTTATTAATCATTATGTCATGATTCTAACTGAATTTAACCGTAGCAATAGACGATGCGCAATCTCAGGTTGCGCCTATATTTATCGGTCGAACGGGTCGATNTTGATATATTTATCTGTCAAAAAAATTTATATATCTCGGACATATAGTGTAACTGTACCAGTCTTTCGGCAGTGTACCTATTTTCGGTAGTGGTAGCTAAAAAGGTGAAATTCTGCACACATCCGGTACAAAAATTTCACAAAATACAATAATTGCAGTGAAACTGTACTTATTTGATATTCACATACGAAGTTTCACACCACTTTCACTTACGTATTTTCCAAAATATCAAATTAATTGTGCTTTTTTTCGGCAGCGTTTGCTGTCAGCAATCGTTCGGGAGGTTTAGTGATTAAGAGAATCAGAAACAGGAAAACAATGAAAAAGTGGTGTATATTATAGATTTTATGCTTATTTAANTATAT]
[+] EMBL AL933161 [GCAAATCCCCCACGGTTAATTCCGCGTACGTCANTCNCCTATTTTACGCGCTAAATATAACTAATNTCCCGTGTAATNTTGCAAGCAGGGGATGGTTTTAGCCACTTTATTAATCATTATGTCATGATTCTAACTGAATTTAACCGTAGCAATAGACGATGCGCAATCTCAGGTTGCGCCTATATTTATCGGTCGAACGGGTCGATNTTGATATATTTATCTGTCAAAAAAATTTATATATCTCGGACATATAGTGTAACTGTACCAGTCTTTCGGCAGTGTACCTATTTTCGGTAGTGGTAGCTAAAAAGGTGAAATTCTGCACACATCCGGTACAAAAATTTCACAAAATACAATAATTGCAGTGAAACTGTACTTATTTGATATTCACATACGAAGTTTCACACCACTTTCACTTACGTATTTTCCAAAATATCAAATTAATTGTGCTTTTTTTCGGCAGCGTTTGCTGTCAGCAATCGTTCGGGAGGTTTAGTGATTAAGAGAATCAGAAACAGGAAAACAATGAAAAAGTGGTGTATATTATAGATTTTATGCTTATTTAANTATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5409#0 CCGCAACAACCGGAGTACCAGCAACCAGCTTCAATGTACTACCAGCAACAACCCGTACAA 60
consensus_5409#1 ------------------------------------------------------------
consensus_5409#2 ---------------------------------------------GCAAATCCCCCACGG 15
consensus_5409#0 TACGCACAACCGCCAGCAGCGTACTCACCGTACAACGAGCAGCAGTACAACCGTCGGCCA 120
consensus_5409#1 ------------------------------------------------------------
consensus_5409#2 TTAATTCCGCGTACGTCANT-CNCCTATTTTACG-CGCTAAATATAACTAATNTCCCGTG 73
consensus_5409#0 CGACCGGAAACATCTTCGTCATCCCCAGGCTTCTTGGATACGATTGCCCGAGCGTTCGGT 180
consensus_5409#1 ------------------------------------------------------------
consensus_5409#2 TAATNTTGCAAGCAGGGGATGGTTTTAGCCACTTTATTAATCATTATGTCATGATTCTAA 133
consensus_5409#0 TTAAACGCGGGAACCAACTCTAGAGCTCCGCGGCCTGCTACGACCTCCTCCTCGTCTGGG 240
consensus_5409#1 ------------------------TTTTCACCGCATTGTGTGCACTTTAGAGGGTTTGTG 36
consensus_5409#2 CTGAATTTAACCGTAGCAATAGACGATGCGCAATCTCAGGTTGCGCCTATATTTATCGGT 193
* * * * *
consensus_5409#0 CTGGGGCTTTTGGGGATGGCACTTGGGCTAGGATAGAGAACC-CGCAGTTTCGCCACGTA 299
consensus_5409#1 CAATTCTCATGAAAGTTTTCTCCACATTTGGCGCAAATTTTT-TGTCGATTG--CAATTA 93
consensus_5409#2 CGAACGGGTCGATNTTGATATATTTATCTGTCAAAAAAATTTATATATCTCGGACATATA 253
* * * * * ** **
consensus_5409#0 GGGTAACTGTACCAGT-TTTCGGCAGTGTACCTATTTTCGGCAG-GGTAGCTAAAAACGT 357
consensus_5409#1 GGGTAACTGTACCAGT-TTTCGGCAGTGTACCTATTTTCGGCAT-GGTAGCTAAAAACGT 151
consensus_5409#2 GTGTAACTGTACCAGTCTTTCGGCAGTGTACCTATTTTCGGTAGTGGTAGCTAAAAAGGT 313
* ************** ************************ * ************ **
consensus_5409#0 GAAATTCTGCACAAATGCGGTA-AAAAAATTCACAAAATACAATT-TTGTAGTGAAAGTG 415
consensus_5409#1 GAAATTCTTCACAAATGCGGTA-AAAAATTTCACAAAATACAATT-TTGTAGTGAAGGTG 209
consensus_5409#2 GAAATTCTGCACACATCCGGTACAAAAATTTCACAAAATACAATAATTGCAGTGAAACTG 373
******** **** ** ***** ***** *************** *** ****** **
consensus_5409#0 TACTTATTTGATATTCACATACGAAGTTTCACACCA-TTTCA-TTTCGTATTTTCCAAAA 473
consensus_5409#1 TACTTATTTGATATTCACATACGAAGTTTCACACCA-TTTCA-TTACGTATTTTCCAAAA 267
consensus_5409#2 TACTTATTTGATATTCACATACGAAGTTTCACACCACTTTCACTTACGTATTTTCCAAAA 433
************************************ ***** ** **************
consensus_5409#0 TATCAAATAAATTGTGCTTTTTTTCGGCAGC-TTTGCTGTCAGCCAATCGTTCGGCAGGT 532
consensus_5409#1 TATCAAATAAATTGTGCTTTTTT-CGGCAGC-TTTGCTGTCAGCCAATCATTCGGCAGGT 325
consensus_5409#2 TATCAAATTAATTGTGCTTTTTTTCGGCAGCGTTTGCTGTCAGC-AATCGTTCGGGAGGT 492
******** ************** ******* ************ **** ***** ****
consensus_5409#0 TTTGTGATTAAGAGAATCAGAA-CAGTAAAACAGTGAAAAAGTGGTGTATATTAAAGATT 591
consensus_5409#1 TTTGTGATTAAGAGAATCAGAA-CAGTAAAACAATGATAAAGTGGTGTATATTAAAGATT 384
consensus_5409#2 TTAGTGATTAAGAGAATCAGAAACAGGAAAACAATGAAAAAGTGGTGTATATTATAGATT 552
** ******************* *** ****** *** **************** *****
consensus_5409#0 TTATGCTTATTTAATT-TATTCTAACTTGTTCGGAATTTTAAAATCACGATAAACAGGTT 650
consensus_5409#1 TTATGCTTATTTAATT-TATTCTAACTTGTTCGGAATTTTAAAATCACGATAAACAGGTT 443
consensus_5409#2 TTATGCTTATTTAANTATAT---------------------------------------- 572
************** * ***
consensus_5409#0 ATTTTTCACTTTAAATGCTGCCGAAAATAGGTACACAGTAAATGTTCATTTTTGACAGCT 710
consensus_5409#1 ATTTTTCACTTTAAATGCTGCCGAAAATAGGTACACAGTAAATTTTCATTTTTGACAGCT 503
consensus_5409#2 ------------------------------------------------------------
consensus_5409#0 CAATTTTGTGGGCTCCTGCCGAAACTCGGAACAATAACACACCTTGGATTTGGCCGAATA 770
consensus_5409#1 CAATGTTGTGGGCTCCTGCTGAAACTCGGAACCATAACACACTTTGAATTTGGCTGAATA 563
consensus_5409#2 ------------------------------------------------------------
consensus_5409#0 TTTCCAGCCTGATATGTAACGGTTAAACGCTTTCAACCCTGT--CAGTTCATACCA-GAC 827
consensus_5409#1 TTCCT--TTTAAAATTGATCAG---AACACTACAATGCGTATGGCGACACATAATATAAC 618
consensus_5409#2 ------------------------------------------------------------
consensus_5409#0 TAACTGGGTACCAAACAATGCTCGCGTATTCTAAAGCAGGTTAGACTGAGCTACAGTAAA 887
consensus_5409#1 CTTTCTTGTACCAAATATCACCAATTTTTCGACAAACAA--TGCACTAACTTAAGAGAAA 676
consensus_5409#2 ------------------------------------------------------------
consensus_5409#0 TGGTTTTGAGGCAATAGGGTAATGCAAATCATGCATCATCAATGATTCCGACCCACAAGT 947
consensus_5409#1 --AATAAATATTTGTAAGCCAGTTTGCACCGTACG------------------------- 709
consensus_5409#2 ------------------------------------------------------------
consensus_5409#0 GGAGCGGGTGTGCTAGATCGGAGTCGGAAACAAATCCGACCCTACCTCGGGGACCTACTA 1007
consensus_5409#1 ------------------------------------------------------------
consensus_5409#2 ------------------------------------------------------------
consensus_5409#0 CCGTAAGGACTTCAAGTTGACTCGAATGATAAGTAGTTGTAAGAAAGCATAAACGACTCC 1067
consensus_5409#1 ------------------------------------------------------------
consensus_5409#2 ------------------------------------------------------------
consensus_5409#0 GACCCACTGGTGCAGCGAGTTTGGGTCAGGTCAAAGTAGGTTTAATACTCGACCCGTACT 1127
consensus_5409#1 ------------------------------------------------------------
consensus_5409#2 ------------------------------------------------------------
consensus_5409#0 CGCTGCACCAATGGGCCGGAATCGCTTATGCTTTAGGATTCGTATCTACCGAAATCGTTG 1187
consensus_5409#1 ------------------------------------------------------------
consensus_5409#2 ------------------------------------------------------------
consensus_5409#0 CACATAC 1194
consensus_5409#1 -------
consensus_5409#2 -------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||