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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5424#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1042 fasta sequence
[GACCCACGCGTCCGGCGTCGTCGTCGTCGTCGTCCCTGTGTGGACGGTCGTCCAAAATAATACTAATAATAATAATAATAATTAAAATAATAATTATATTAGGTAATTATATTAATAATTATAATAATAATTATAATAATAATGATAGTAATGTGTAATTAAGATAGTACGAAACGGACAGGAGGTGTACACGGAAGCGCGGACAACTAAGCAAAAAGGAGAACACAGGTGCACCACACGGTTCATTAGTATGGCTGTACTTTTCGTCCTGAGTCATGGGAAAAAAGTACCAAGTGTAGATATCATTTTATCCGACAGAAAGCTGCTGTAAGAGAGAAGGTTGAACGGAACCAGGAATCAACCTGGGTGGTGTAGCGTTTTGTTACGTTTACAGTAAATGAAGACAGAAAACGACAGAGGAGCGGGAAAGCACACACACACACACACACTCACATTTTTCCCAATAAAAGGAAGGCAACGGCTTATGGCTTACC-TTTGCCTCTCTCCGTACACAGGATCTGGCACTGATCCACTCACACACACACACACCATCTGCGTTTGATTTGATCGTGTCGCCGGCGATGACGTGCCGCGATCATGATCAGTGTAATATATTTATGTAAAGTAATGTTAATGTACTCGCTATTTTCCTCGTCCGGTCGTCGTTGTCGTTTGTGTGCATGGAGATGATGGTGGAACTGATGCATTCTGGTTCTCCCGGATGCTGGGGAGAGGATTGAATGTGTGTGATGTTCGGCGCGACTATGTAAATGTAAGCCAAAAACTACTACGGAAGGACGAAATGTGGTATAATAGAGGAAAAAGATTAAAAAACTATCATCGGAACCAGATTGTTGTTTCTCGTGTGTTTTCTCTGTCATTTGCCTAACACATTGTCGTCATTCGTATTCGTACACAAGTTCATGTAAATTTTCTCTCGAACTTTTCGTATTAAAAAAACCAACAGCTGCAACTGTTGTGTGTGTGCGCGTGTTAGAGAAATCGAGCGGGATGAAAGGCAAATAAATGGAAAAAAGTTAAT]
[+] EMBL BM620168 [GACCCACGCGTCCGGCGTCGTCGTCGTCGTCGTCCCTGTGTGGACGGTCGTCCAAAATAATACTAATAATAATAATAATAATTAAAATAATAATTATATTAGGTAATTATATTAATAATTATAATAATAATTATAATAATAATGATAGTAATGTGTAATTAAGATAGTACGAAACGGACAGGAGGTGTACACGGAAGCGCGGACAACTAAGCAAAAAGGAGAACACAGGTGCACCACACGGTTCATTAGTATGGCTGTACTTTTCGTCCTGAGTCATGGGAAAAAAGTACCAAGTGTAGATATCATTTTATCCGACAGAAAGCTGCTGTAAGAGAGAAGGTTGAACGGAACCAGGAATCAACCTGGGTGGTGTAGCGTTTTGTTACGTTTACAGTAAATGAAGACAGAAAACGACAGAGGAGCGGGAAAGCACACACACACACACACACTCACATTTTTCCCAATAAAAGGAAGGCAACGGCTTATGGCTTACC TTTGCCTCTCTCCGTACACAGGATCTGGCACTGATCCACTCACACACACACACACCATCTGCGTTTGATTTGATCGTGTCGCCGGCGATGACGTGCCGCGATCATGATCAGTGTAATATATTTATGTAAAGTAATGTTAATGTACTCGCTATTTTCCTCGTCCGGTCGTCGTTGTCGTTTGTGTGCATGGAGATGATGG ]
[+] EMBL BM625747 [ ccgGTAGCGTTTTGTTACGTTTACAGTAAATGAAGACAGAAAACGACAGAGGAGCGGGAAAGCACACACACACACTCA CACA TTTTCCCAATAAAAGGAAGGCAACGGCTTATGACTTACCTTTTGCCTCTCTCCGTACACAGGATCTGGCACTGATCCACT CACACACACACACCATCTGCGTTTGATTTGATCGTGTCGCCGGCGATGACGTGCCGCGATCATG CAGTGTAATATATTTATGTAAAGTAATGTTAATGTACTCGCTATTTTCCTCGTCCGGTCGTCGTTGTCGTTTGTGTGCATGGAGATGATGGTGGAACTGATGCATTCTGGTTCTCCCGGATGCTGGGGAGAGGATTGAATGTGTGTGATGTTCGGCGCGACTATGTAAATGTAAGCCAAAAACTACTACGGAAGGACGAAATGTGGTATAATAGAGGAAAAAGATTAAAAAACTATCATCGGAACCAGATTGTTGTTTCTCGTGTGTTTTCTCTGTCATTTGCCTAACACATTGTCGTCATTCGTATTCGTACACAAGTTCATGTAAATTTTCTCTCGAACTTTTCGTATTAAAAAAACCAACAGCTGCAACTGTTGTGTGTGTGCGCGTGTTAGAGAAATCGAGCGGGATGAAAGGCAAATAAATGGAAAAAAGTTAAT]
consensusID : consensus_5424#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 846 fasta sequence
[ACGAAGAAAAAAAAACAAATATAAACAGCCAGAAAACAGTTGCGGCTGGGTGTCGTCGTCGTCGTCCCTGTGTGGACGGTCGTCCAAAATAATACTAATAATAATAATAATAATTAAAATAATAATTATATTAATAATTATATTAATAATTATAATAATAATGATAATAATAATGATAATAATGTGTAATTAAGATAGTACGAAACGGACATGATGTGTACACGGAAGCGCGGACAACTAAGCAAAAAGGAGAACACAGGTGCACCACACGGTTTATTAGTATGGCTGTACTTTTCGTCCTAAGTCA-TGGGAAAAAAGTA-CCA-AGTGTA-GATATCATTTTATCCGACAGAAAGCTGCTGTAAGAAAGAAGGTTGAACGGAACCAGGAATCAACCTGTGGTCTACTGGGTGGTGTAGCGTTTTGTTACGTTTACA-GTAAA-TGAAGACAGAAAACGACAGAGGAGCGGGAAAGC-AC-AC-ACACACACTCACACATTTTCCCAATAAAAGGAAGGCAACGGCTTATGACTTACCTTTTGCCTCTCTCCGTACACAGGATCTGGCACTGATCCACTCACACACACACACCATCTGCGTTTGATTTGATCGTGTCGCCCGGCGATGACGTGCCGCGATCATGCAGTGTAATATATTTATGTAAAGTAATGTTAATGTACTCGCTATTTTCCTCGTCCGGTCGTCGTTGTCGTTTGTGTGCATGGAGATGCATGGTGGAACTGATGCATTCTGGTTCTCCCGGATGCTGGGGAGAGGAATTGAATGTGTGTGATGTTCGGCGCGACTATGTAACATGTAAGCCAAAAACTACTACGGAAGGACGAAATGTGGT]
[+] EMBL BM587224 [ACGAAGAAAAAAAAACAAATATAAACAGCCAGAAAACAGTTGCGGCTGGGTGTCGTCGTCGTCGTCCCTGTGTGGACGGTCGTCCAAAATAATACTAATAATAATAATAATAATTAAAATAATAATTATATTAATAATTATATTAATAATTATAATAATAATGATAATAATAATGATAATAATGTGTAATTAAGATAGTACGAAACGGACATGATGTGTACACGGAAGCGCGGACAACTAAGCAAAAAGGAGAACACAGGTGCACCACACGGTTTATTAGTATGGCTGTACTTTTCGTCCTAAGTCA TGGGAAAAAAGTA CCA AGTGTA GATATCATTTTATCCGACAGAAAGCTGCTGTAAGAAAGAAGGTTGAACGGAACCAGGAATCAACCTGTGGTCTACTGGGTGGTGTAGCGTTTTGTTACGTTTACA GTAAA TGAAGACAGAAAACGACAGAGGAGCGGGAAAGC AC AC ACACACACTCACACATTTTCCCAATAAAAGGAAGGCAACGGCTTATGACTTACCTTTTGCCTCTCTCCGTACACAGGATCTGGCACTGATCCACTCACACACACACACCATCTGCGTTTGATTTGATCGTGTCGCCCGGCG ]
[+] EMBL AL933540 [ ccnaggttAAACGGACATTATGTGTACACCNAAGCGC GACAACTAAGCCAAAAGGAGAACACAGGTGCACCACACGGTTTATTAGTATGGCTGTACTTTTCGTCCTAAGTCACTGGGAAAAAAGTACCCANAGTGTATGATATCATTTTATCCGACAGAAAGCTGCTGTAAGAAAGAAGGTTGAACGGAACCNGGAATCAACCTGTGGTCTACTGGGTGGTGTAGCGTTTTGTTACGTTTACACGTAAACTGAAGACNGAAAACGACAGAGGAGCGGGAAAGCAACAACAACACACACTCACACATTTTCCCAATAAAAGGAAGGCAACGGCTTATGACTTACCTTTTGCCTCTCTCCGTACACAGGATCTGGCACTGATCCACTTACACACACACACCATCTGCGTTTGATTTGATCGTGTCG CCGGCGATGACGTGCCGCGATCATGCAGTGTAATATATTTATGTAAAGTAATGTTAATGTACTCGCTATTTTCCTCGTCCGGTCGTCGTTGTCGTTTGTGTGCATGGAGATGCATGGTGGAACTGATGCATTCTGGTTCTCCCGGATGCTGGGGAGAGGAATTGAATGTGTGTGATGTTCGGCGCGACTATGTAACATGTAAGCCAAAAACTACTACGGAAGGACGAAATGTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5424#0 ----------------------------------GACCCACGCGTCCGGCGTCGTCGTCG 26
consensus_5424#1 ACGAAGAAAAAAAAACAAATATAAACAGCCAGAAAACAGTTGCGGCTGGG--TGTCGTCG 58
** *** * ** *******
consensus_5424#0 TCGTCGTCCCTGTGTGGACGGTCGTCCAAAATAATACTAATAATAATAATAATAATTAAA 86
consensus_5424#1 TCGTCGTCCCTGTGTGGACGGTCGTCCAAAATAATACTAATAATAATAATAATAATTAAA 118
************************************************************
consensus_5424#0 ATAATAATTATATTAGGTAATTATATTAATAATTATAATAATAATTATAATAATAATGAT 146
consensus_5424#1 ATAATAATTATATTAA-TAATTATATTAATAATTATAATAATAATGATAATAATAATGAT 177
*************** **************************** **************
consensus_5424#0 AGTAATGTGTAATTAAGATAGTACGAAACGGACAGGAGGTGTACACGGAAGCGCGGACAA 206
consensus_5424#1 AATAATGTGTAATTAAGATAGTACGAAACGGACATGATGTGTACACGGAAGCGCGGACAA 237
* ******************************** ** **********************
consensus_5424#0 CTAAGCAAAAAGGAGAACACAGGTGCACCACACGGTTCATTAGTATGGCTGTACTTTTCG 266
consensus_5424#1 CTAAGCAAAAAGGAGAACACAGGTGCACCACACGGTTTATTAGTATGGCTGTACTTTTCG 297
************************************* **********************
consensus_5424#0 TCCTGAGTCATGGGAAAAAAGTACCAAGTGTAGATATCATTTTATCCGACAGAAAGCTGC 326
consensus_5424#1 TCCTAAGTCATGGGAAAAAAGTACCAAGTGTAGATATCATTTTATCCGACAGAAAGCTGC 357
**** *******************************************************
consensus_5424#0 TGTAAGAGAGAAGGTTGAACGGAACCAGGAATCAACCTG----------GGTGGTGTAGC 376
consensus_5424#1 TGTAAGAAAGAAGGTTGAACGGAACCAGGAATCAACCTGTGGTCTACTGGGTGGTGTAGC 417
******* ******************************* ***********
consensus_5424#0 GTTTTGTTACGTTTACAGTAAATGAAGACAGAAAACGACAGAGGAGCGGGAAAGCACACA 436
consensus_5424#1 GTTTTGTTACGTTTACAGTAAATGAAGACAGAAAACGACAGAGGAGCGGGAAAGCACACA 477
************************************************************
consensus_5424#0 CACACACACACACTCACATTTTTCCCAATAAAAGGAAGGCAACGGCTTATGGCTTACCTT 496
consensus_5424#1 CACACACTCACACA-----TTTTCCCAATAAAAGGAAGGCAACGGCTTATGACTTACCTT 532
******* ***** ******************************** ********
consensus_5424#0 T-GCCTCTCTCCGTACACAGGATCTGGCACTGATCCACTCACACACACACACACCATCTG 555
consensus_5424#1 TTGCCTCTCTCCGTACACAGGATCTGGCACTGATCCACTCACACACACACAC--CATCTG 590
* ************************************************** ******
consensus_5424#0 CGTTTGATTTGATCGTGTCGCC-GGCGATGACGTGCCGCGATCATGATCAGTGTAATATA 614
consensus_5424#1 CGTTTGATTTGATCGTGTCGCCCGGCGATGACGTGCCGCGATCATG--CAGTGTAATATA 648
********************** *********************** ************
consensus_5424#0 TTTATGTAAAGTAATGTTAATGTACTCGCTATTTTCCTCGTCCGGTCGTCGTTGTCGTTT 674
consensus_5424#1 TTTATGTAAAGTAATGTTAATGTACTCGCTATTTTCCTCGTCCGGTCGTCGTTGTCGTTT 708
************************************************************
consensus_5424#0 GTGTGCATGGAGATG-ATGGTGGAACTGATGCATTCTGGTTCTCCCGGATGCTGGGGAGA 733
consensus_5424#1 GTGTGCATGGAGATGCATGGTGGAACTGATGCATTCTGGTTCTCCCGGATGCTGGGGAGA 768
*************** ********************************************
consensus_5424#0 GGA-TTGAATGTGTGTGATGTTCGGCGCGACTATGTAA-ATGTAAGCCAAAAACTACTAC 791
consensus_5424#1 GGAATTGAATGTGTGTGATGTTCGGCGCGACTATGTAACATGTAAGCCAAAAACTACTAC 828
*** ********************************** *********************
consensus_5424#0 GGAAGGACGAAATGTGGTATAATAGAGGAAAAAGATTAAAAAACTATCATCGGAACCAGA 851
consensus_5424#1 GGAAGGACGAAATGTGGT------------------------------------------ 846
******************
consensus_5424#0 TTGTTGTTTCTCGTGTGTTTTCTCTGTCATTTGCCTAACACATTGTCGTCATTCGTATTC 911
consensus_5424#1 ------------------------------------------------------------
consensus_5424#0 GTACACAAGTTCATGTAAATTTTCTCTCGAACTTTTCGTATTAAAAAAACCAACAGCTGC 971
consensus_5424#1 ------------------------------------------------------------
consensus_5424#0 AACTGTTGTGTGTGTGCGCGTGTTAGAGAAATCGAGCGGGATGAAAGGCAAATAAATGGA 1031
consensus_5424#1 ------------------------------------------------------------
consensus_5424#0 AAAAAGTTAAT 1042
consensus_5424#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||