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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5433#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1143 fasta sequence
[TTTTTTTTAATACGCGGACGCCAAACCACCAAAGCCCGTAATTTCCGATGGCGGAATTAGAACAGTGGCAAGAGTTTGCGTCGCAAATCGCTAAACCCGACCGCTCGATCCGGTGCAATCCGGATGGCATCGGGTTCGGGCAGTTTGCAATCGTTTGCAGTCTTCCGGGAGCACCGGAAAACGTACAAAAGTTGATCGATTCACCGGTGGCGAA-CTTCACAAGCAGACATCAACAGAGCACGACAGCAACACAAGCACGGAGGACATTGTGAAGATTCTTATCGAACAGTTACCCTGCTTTGGAACGTTGGAACAGTATACTTGGCTGGTGAGAGCGACGGTCGCATTGCACCTGCTCAAGGGAGTGCCGACGAAGGTGTCCTCCCTGGTGCGGAAGTTGAGCGGGGCTGTCGCGGGGCTCGATCTTGCCTGCTTCCGTCATTCTACATTTATGATACACACGGTGGCTAAAAGCTTAAAGGAAGACATCCCACTGGAAGGTGTTAATCTGCTGCACGCGATCAAAAAGCTTGCCCTTGCAAACTCCCCGCAGCTTTACTACACGGCCCTGGCACTGATTTTTGCCGGGTTCGATGCGATAACACACCCCAACAAACCGATCGCCACGTACCGGGTGTGTGGGGTGAATGAGGCGCTTCAATTGCTCGATACACTCGACGCACCGTGGCTTCAGCGGCAGTTTGCCAGCCTGCAGACCATCTACCAGCTGCTGAAGCTGCTTAGCCTTTACCAGAACATGGTGATAATGCG-GCACGCGGGCAAACGACCGCAGAAGCTGCAGGAAGAGCACGCAAGCTTTGCGGCACTGCTGTGCGCAACGGACGCGCAGGTGAAAAGCATCCGCCAGTGGCTGGAACAGTTGAGCGTGGTGCTGCAACCGTACGGCATCAGGCAGGATGAGGACCATTTGATTATAGCAGATTTAATACACGTCGATATGCTTCCGTTGTTCGACGATTGGGATCAACACGAGGAGATGATGTGAGGCGGGCGCGCCCCTTGAAGCACGTGCCATTTGATGGTTTATTTTTCCTTGCATTCCTTGATTCTCACAATGTGCTTTACAATTAGCATTTTCTATAAAAATAAAACATCCACAAAAAAAATAACCCCCCCCCCCCC]
[+] EMBL CNS09DT7 [TTTTTTTTAATACGCGGACGCCAAACCACCAAAGCCCGTAATTTCCGATGGCGGAATTAGAACAGTGGCAAGAGTTTGCGTCGCAAATCGCTAAACCCGACCGCTCGATCCGGTGCAATCCGGATGGCATCGGGTTCGGGCAGTTTGCAATCGTTTGCAGTCTTCCGGGAGCACCGGAAAACGTACAAAAGTTGATCGATTCACCGGTGGCGAA CTTCACAAGCAGACATCAACAGAGCACGACAGCAACACAAGCACGGAGGACATTGTGAAGATTCTTATCGAACAGTTACCCTGCTTTGGAACGTTGGAACAGTATACTTGGCTGGTGAGAGCGACGGTCGCATTGCACCTGCTCAAGGGAGTGCCGACGAAGGTGTCCTCCCTGGTGCGGAAGTTGAGCGGGGCTGTCGCGGGGCTCGATCTTGCCTGCTTCCGTCATTCTACATTTATGATACACACGGTGGCTAAAAGCTTAAAGGAAGACATCCCACTGGAAGGTGTTAATCTGCTGCACGCGATCAAAAAGCTTGCCCTTGCAAACTCCCCGCAGCTTTACTACACGGCCCTGGCACTGATTTTTGCCGGGTTCGATGCGATAACACACCCCAACAAACCGATCGCCACGTACCGGGTGTGTGGGGTGAATGAGGCGCTTCAATTGCTCGATACACTCGACGCACCGTGGCTTCAGCGGCAGTTTGCCAGCCTGCAGACCATCTACCAGCTGCTGAAGCTGCTTAGCCTTTACCAGAACATGGTGATAATGCG GCACGCGGGCAAACGACCGCAGAAGCTGCAGGAAGAGCACGCAAGCTTTGCGGCACTGCTGTGCGCAACGGACGCGCAGGTGAAAAGC ]
[+] EMBL BM589162 [ ccgGCGGACGCCAAACCATCAAAGCCCGCAATTTCCGATGGCGGAATTAGAACAGTGGCAAGAGTTTGCGTCGCAAATCGCTAAACCCGACCGCTCGATCCGGTGCAATCCGGAAGGTATCGGGTTCGGGCAGTTTGCAATCGTTTGCAGTCTTCCGGGAGCACCGGAAAACGTACAAAAGTTGATCGATTCACCGGTGGCGAAGCTTCACAAGCAGACATCAACAGAGCACGACAGCAACACAAGCACGGAGGACATTGTGAAGATTCTTATCGAACAGTTACCCTGCTTTGGAACATTGGAACAGTATACTTGGCTGGTGAGAGCGACGGTCGCATTGCACCTGCTCAAGGGAGTGCCGACGAAGGTGTCCTCCCTGGTGCGGAAGTTGAGCGGGGCTGTCGCGGGGCTCGATCTTGCCTGCTTCCGTCATTCTACATTTATGATACACACGGTGGCTAAAAGCTTAAAGGAAGACATCCCACTGGAAGGTGTTAATTTGCTGCACGCGATCAAAAAGCTGGCCCTTGCCAACTCCCCGCAGCTTTACTACACGGCCCTGGCACTGATTTTTGCCGGGTTCGATGCGATAACACACCCCAACA ]
[-] EMBL CNS09DT8 [ GGGCTCGATCTTGCCTGCTTCCGTCATTCTACATTTATGAAACACACGGTGGCTAAAAGCTTAAAGGAAGACATCCCACTGGAAGGTGTTAATCTGCTGCACGCGATCAAAAAGCTTGCCCTTGCAAACTCCCCGCAGCTTTACTAAACGGCCCTGGCACTGATTTTTGCCGGGTTCGATGCGATAACACACCCCAAAAAACCGATCGCCACGTACCGGGTGTGTGGGGTGAATAAGGCGCTTCAATTGCTCGAAACACTCGACGCACCGTGGCTTCAGCGGCAGTGTGCCAGCCTGCAGACCATCTACCAGCTGCTGAAGCTGCTTAGCCTTTACCAGAACATGGTGATAATGCGCGCACGCCGGCAAACGACCGCAGGAGCTGCAGGAAGAGCACGCAAGCTTTGCGGAACTGCTGTGCGCAACGGACGCGCAGGTGAAAAGCATCCGCCAGTGGCTGGAACAGTTGAGCGTGGTGCTGCAACCGTACGGCATCAGGCAGGATGAGGACCATTTGATTATAGCAGATTTAATACACGTCGATATGCTTCCGTTGTTCGACGATTGGGATCAACACGAGGAGATGATGTGAGGCGGGCGCGCCCCTTGAAGCACGTGCCATTTGATGGTTTATTTTTCCTTGCATTCCTTGATTCTCACAATGTGCTTTACAATTAGCATTTTCTATAAAAATAAAACATCCACAAAAAAAATAACCCCCCCCCCCCC]
consensusID : consensus_5433#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1137 fasta sequence
[AGATCCCCCGAGGTTTNTGCGTCGCAATCGCTAAACCCGACGCTCGATCCGGTGCAATCCGGATGGCATCGGGTTCGGGCAGTTTGCAATCGTTTGCAGTCTTCCGGGAGCACCGGAAAACGTGCAAACAGTTGATCGATTCACCGGTGGCGAAGCTTCACAAGCAGACATCAACAGAGCACGACAGCAACACAAGCACGGAGGACATTGTGAAGATTCTTATCGAACAGTTACCCTGCTTTGGAACGTTGGAACAGTATGCGTGGCTGGTGAGAGCGACGGTCGCATTGCACCTGCTCAAGGGAGTGTCGACGAAGGTGTCCTCCCTGGTGCGGAAGTTGAGCGGGGCTGTCGCGGGGCTCGATCTTGCCTGCTTCCGTCATTCTACATTTATGATACACACGGTGGCTAAAAGCTTAAAGGAAGACATCCCACTGGAAGGTGTTAATCTGGTGCACTGCGATCAAAAAGCTTGCCCTTGCAAACTCCCCGCAGCTTTACTACACGGCCTGGCACTGATTTTTGCCGGGTTCGATGCGATAACACACCCAACAAACCGATCGCCACGTACCGGGTGTGTGGGGTGAATGAGGCGCTTCAATTGCTCGATACACTCGACGCACCGTGGCTTCAGCGGCAGTGTGCCAGCCTGCAGGCCATCTACCAGCTGCTGAAGCTTGNTTAGCCTTTACCAGAACATGGTGATAATGCGGCACGCCGGCAAACGAACCGCAGGAGCTGCAGGAAGAGCCACGCAAGCTTTGCGGGGCACTGCTGTGCGCAACGGACGCGCAGGTGACAAGCATTCCGNCAGTGGCTGGAACAGGTGAGCGTGGTGCTGCAACCGNTACGGGTAATCAGGGCAGGATTGCAGGGACCATCTGGACTTATAGCAGATTNGATAACACGTCGATATGCANTTCCGGTGGGNNCGGAACGGAATTATGGGGNATTCCAACCAACCGCANCGGAANNATTNGAACNGCTTAACNGCCGGGANCNGACANACCCCCTTTGAGAACCCACTGTTTGCCAAGTTGTGAATGGGGCNATCAAGTTCTATTCAAGTGTGGCACATCCCCCTTGGCGATTTCNTCCCACAATATGTNNGCGTCTTAACACAGNTGACCATCTGTG]
[+] EMBL AL934465 [AGATCCCCCGAGGTTTNTGCGTCGCAATCGCTAAACCCGACGCTCGATCCGGTGCAATCCGGATGGCATCGGGTTCGGGCAGTTTGCAATCGTTTGCAGTCTTCCGGGAGCACCGGAAAACGTGCAAACAGTTGATCGATTCACCGGTGGCGAAGCTTCACAAGCAGACATCAACAGAGCACGACAGCAACACAAGCACGGAGGACATTGTGAAGATTCTTATCGAACAGTTACCCTGCTTTGGAACGTTGGAACAGTATGCGTGGCTGGTGAGAGCGACGGTCGCATTGCACCTGCTCAAGGGAGTGTCGACGAAGGTGTCCTCCCTGGTGCGGAAGTTGAGCGGGGCTGTCGCGGGGCTCGATCTTGCCTGCTTCCGTCATTCTACATTTATGATACACACGGTGGCTAAAAGCTTAAAGGAAGACATCCCACTGGAAGGTGTTAATCTGGTGCACTGCGATCAAAAAGCTTGCCCTTGCAAACTCCCCGCAGCTTTACTACACGGCCTGGCACTGATTTTTGCCGGGTTCGATGCGATAACACACCCAACAAACCGATCGCCACGTACCGGGTGTGTGGGGTGAATGAGGCGCTTCAATTGCTCGATACACTCGACGCACCGTGGCTTCAGCGGCAGTGTGCCAGCCTGCAGGCCATCTACCAGCTGCTGAAGCTTGNTTAGCCTTTACCAGAACATGGTGATAATGCGGCACGCCGGCAAACGAACCGCAGGAGCTGCAGGAAGAGCCACGCAAGCTTTGCGGGGCACTGCTGTGCGCAACGGACGCGCAGGTGACAAGCATTCCGNCAGTGGCTGGAACAGGTGAGCGTGGTGCTGCAACCGNTACGGGTAATCAGGGCAGGATTGCAGGGACCATCTGGACTTATAGCAGATTNGATAACACGTCGATATGCANTTCCGGTGGGNNCGGAACGGAATTATGGGGNATTCCAACCAACCGCANCGGAANNATTNGAACNGCTTAACNGCCGGGANCNGACANACCCCCTTTGAGAACCCACTGTTTGCCAAGTTGTGAATGGGGCNATCAAGTTCTATTCAAGTGTGGCACATCCCCCTTGGCGATTTCNTCCCACAATATGTNNGCGTCTTAACACAGNTGACCATCTGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5433#0 TTTTTTTTAATACGCGGACGCCAAACCACCAAAGCCCGTAATTTCCGATGGCGGAATTAG 60
consensus_5433#1 ----------------------------------------------------------AG 2
**
consensus_5433#0 AACAGTGGCAAGAGTTTGCGTCGCAAATCGCTAAACCCGACCGCTCGATCCGGTGCAATC 120
consensus_5433#1 ATCCCCCG-AGGTTTNTGCGTCGCAA-TCGCTAAACCCGAC-GCTCGATCCGGTGCAATC 59
* * * * * * ********** ************** ******************
consensus_5433#0 CGGATGGCATCGGGTTCGGGCAGTTTGCAATCGTTTGCAGTCTTCCGGGAGCACCGGAAA 180
consensus_5433#1 CGGATGGCATCGGGTTCGGGCAGTTTGCAATCGTTTGCAGTCTTCCGGGAGCACCGGAAA 119
************************************************************
consensus_5433#0 ACGTACAAA-AGTTGATCGATTCACCGGTGGCGAA-CTTCACAAGCAGACATCAACAGAG 238
consensus_5433#1 ACGTGCAAACAGTTGATCGATTCACCGGTGGCGAAGCTTCACAAGCAGACATCAACAGAG 179
**** **** ************************* ************************
consensus_5433#0 CACGACAGCAACACAAGCACGGAGGACATTGTGAAGATTCTTATCGAACAGTTACCCTGC 298
consensus_5433#1 CACGACAGCAACACAAGCACGGAGGACATTGTGAAGATTCTTATCGAACAGTTACCCTGC 239
************************************************************
consensus_5433#0 TTTGGAACGTTGGAACAGTATACTTGGCTGGTGAGAGCGACGGTCGCATTGCACCTGCTC 358
consensus_5433#1 TTTGGAACGTTGGAACAGTATGCGTGGCTGGTGAGAGCGACGGTCGCATTGCACCTGCTC 299
********************* * ************************************
consensus_5433#0 AAGGGAGTGCCGACGAAGGTGTCCTCCCTGGTGCGGAAGTTGAGCGGGGCTGTCGCGGGG 418
consensus_5433#1 AAGGGAGTGTCGACGAAGGTGTCCTCCCTGGTGCGGAAGTTGAGCGGGGCTGTCGCGGGG 359
********* **************************************************
consensus_5433#0 CTCGATCTTGCCTGCTTCCGTCATTCTACATTTATGATACACACGGTGGCTAAAAGCTTA 478
consensus_5433#1 CTCGATCTTGCCTGCTTCCGTCATTCTACATTTATGATACACACGGTGGCTAAAAGCTTA 419
************************************************************
consensus_5433#0 AAGGAAGACATCCCACTGGAAGGTGTTAATCTGCTGCAC-GCGATCAAAAAGCTTGCCCT 537
consensus_5433#1 AAGGAAGACATCCCACTGGAAGGTGTTAATCTGGTGCACTGCGATCAAAAAGCTTGCCCT 479
********************************* ***** ********************
consensus_5433#0 TGCAAACTCCCCGCAGCTTTACTACACGGCCCTGGCACTGATTTTTGCCGGGTTCGATGC 597
consensus_5433#1 TGCAAACTCCCCGCAGCTTTACTACACGGCC-TGGCACTGATTTTTGCCGGGTTCGATGC 538
******************************* ****************************
consensus_5433#0 GATAACACACCCCAACAAACCGATCGCCACGTACCGGGTGTGTGGGGTGAATGAGGCGCT 657
consensus_5433#1 GATAACACACCC-AACAAACCGATCGCCACGTACCGGGTGTGTGGGGTGAATGAGGCGCT 597
************ ***********************************************
consensus_5433#0 TCAATTGCTCGATACACTCGACGCACCGTGGCTTCAGCGGCAGTTTGCCAGCCTGCAGAC 717
consensus_5433#1 TCAATTGCTCGATACACTCGACGCACCGTGGCTTCAGCGGCAGTGTGCCAGCCTGCAGGC 657
******************************************** ************* *
consensus_5433#0 CATCTACCAGCTGCTGAAGCT-GCTTAGCCTTTACCAGAACATGGTGATAATGCGGCACG 776
consensus_5433#1 CATCTACCAGCTGCTGAAGCTTGNTTAGCCTTTACCAGAACATGGTGATAATGCGGCACG 717
********************* * ************************************
consensus_5433#0 CGGGCAAACGA-CCGCAGAAGCTGCAGGAAGAGC-ACGCAAGCTTTGCGG--CACTGCTG 832
consensus_5433#1 CCGGCAAACGAACCGCAGGAGCTGCAGGAAGAGCCACGCAAGCTTTGCGGGGCACTGCTG 777
* ********* ****** *************** *************** ********
consensus_5433#0 TGCGCAACGGACGCGCAGGTGAAAAGCAT-CCGCCAGTGGCTGGAACAGTTGAGCGTGGT 891
consensus_5433#1 TGCGCAACGGACGCGCAGGTGACAAGCATTCCGNCAGTGGCTGGAACAGGTGAGCGTGGT 837
********************** ****** *** *************** **********
consensus_5433#0 GCTGCAACCGT-ACGGC--ATCAGG-CAGGAT---GAGGACCATTTGA--TTATAGCAGA 942
consensus_5433#1 GCTGCAACCGNTACGGGTAATCAGGGCAGGATTGCAGGGACCATCTGGACTTATAGCAGA 897
********** **** ****** ****** ******* ** **********
consensus_5433#0 TTTAATA-CACGTCGATATGC--TTCCGTTGTTCGACGATTGGGATCAACACGAGGAGAT 999
consensus_5433#1 TTNGATAACACGTCGATATGCANTTCCGGTGGGNNCGGAACGGAATTA-TGGGGNATTCC 956
** *** ************* ***** ** ** ** ** * *
consensus_5433#0 GATGTGAGGCGGGCGCGCCCCTTGAAGCACGTGCCATTTGATGGTT--TATTTTTCCTT- 1056
consensus_5433#1 AACCAACCGCANCGGAANNATTNGAACNGCTTAACNGCCGGGANCNGACANACCCCCTTT 1016
* ** * * *** * * * * * ****
consensus_5433#0 --GCATTCCTTGATTCTCACAATGTGCTTTACAATTAGCATTTTCTAT--AAAAATAAAA 1112
consensus_5433#1 GAGAACCCACTGTTTGCCAAGTTGTGAAT-GGGGCNATCAAGTTCTATTCAAGTGTGGCA 1075
* * * ** ** ** **** * * ** ****** ** * *
consensus_5433#0 CATCCACAAAAAAAATAACCCCCCCCCCCCC----------------------------- 1143
consensus_5433#1 CATCCCCCTTGGCGATTTCNTCCCACAATATGTNNGCGTCTTAACACAGNTGACCATCTG 1135
***** * ** * *** *
consensus_5433#0 --
consensus_5433#1 TG 1137
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||