cluster # 5435

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Anopheles gambiae
cluster # 5435 cluster # 5435 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5435#0 length = 736 sequences # 3

consensus_5435#1 length = 704 sequences # 1

consensusID : consensus_5435#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 736
fasta sequence

                              [GGCGGCACGAGGGCGAAATGCGTTGATCGTGGTGGCAGGAGCTACGCTTGCTTATTATCTTAAAACTG-ATATGGATGATTCTGTATTCAACTTAACTGGCCACGTGCCGGCTGGATTGCCGGTCTTTCAGATGCCTCCTTTCTCGTACACGAATATAAATGGTACGGAGTACAGCTTTGGGGACATGCTAAGCGTAATGCGAACATCCATCAT-AACGATTCCTCTGGTAACAACTCTTGAAATTGTGTCGGTCGGAAAAGCCTTTTCCAAAGGAAAAATTATTGACGCGACACAAGAAATGATTGCACTTGGAATGTCGAATTTAGTTGTCTCATTTTGTTCGCCATTGCCAGCAGCAGGTTCCTTTACGCGTTCGGCATTAAACAATAGTAGCGGCGTACGAACAACGATGAGCTGTGCGGTAACAGCGGTAGTGTTGACAATATCATTGGCATTATTCACCGATGCACTATACTACATTCCCAAGGCAACACTCGCGTCGGTCGTCATCTCAGCCATGCTATTTATGCCCGATTACGAAGAAATCGGTAACATTTGGCGTTCGAAGAAGATGGATCTGATTCCCTTTCTGGCAACCGCATTGGCTTGTTTGTTCTACGAGCTAGATTACGGTATTTTGGTAGGAATCGGATTAAATTGTTGCATTCTACTTTATCTGATGTCGACTCCCGGTCTATCANGCGAAGAAATCCAACTTTCAGGACTTACCGTGCTA]

[+] EMBL BX625025             [GGCGGCACGAGGGCGAAATGCGTTGATCGTGGTGGCAGGAGCTACGCTTGCTTATTATCTTAAAACTG ATATGGATGATTCTGTATTCAACTTAACTGGCCACGTGCCGGCTGGATTGCCGGTCTTTCAGATGCCTCCTTTCTCGTACACGAATATAAATGGTACGGAGTACAGCTTTGGGGACATGCTAAGCGTAATGCGAACATCCATCAT AACGATTCCTCTGGTAACAACTCTTGAAATTGTGTCGGTCGGAAAAGCCTTTTCCAAAGGAAAAATTATTGACGCGACACAAGAAATGATTGCACTTGGAATGTCGAATTTAGTTGTCTCATTTTGTTCGCCATTGCCAGCAGCAGGTTCCTTTACGCGTTCGGCATTAAACAATAGTAGCGGCGTACGAACAACGATGAGCTGTGCGGTAACAGCGGTAGTGTTGACAATATCATTGGCATTATTCACCGATGCACTATACTACATTCCCAAGGCAACACTCGCGTCGGTCGTCATCTCAGCCATGCTATTTATGCCCGATTACGAAGAAATCGGTAACATTTGGCGTTCGAAGAAGATGGATCTGATTCCCTTTCTGGCAACCGCATTGGCTTGTTTGTTCTACGAGCTAGATTACGGTATTTTGGTAGGAATCGGATTAAATTGTTGCATTCTACTTTATCTGATGTCGACTCCCGGTCTATCANGCGAAGAAATCCAACTTTCAGGACTTACCGTGCTA]
[+] EMBL AL934536             [                         ATCGTGGTGGCAGGAGCTACGCTTGCTTATTATCTTAAAACTGAATATGGATGATTCTGTATTCAACTTAACTGGCCACGTGCCGGCTGGATTGCCGGTCTTTCAGATGCCTCCTTTCTCGTACACGAATATAAATGGTACGGAGTACAGCTTTGGGGACATGCTAAGCGTAATGCGAACATCCATCATAAACGATTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX623156             [                                                                                                                                                                       GAGTACAGCTTTGGGGACATGCTAAGCGTAATGCGAACATCCATCAT AACGATTCCTCTGGTAACAACTCTTGAAATTGTGTCGGTCGGAAAAGCCTTTTCCAAAGGAAAAATTATTGACGCGACACAAGAAATGATTGCACTTGGAATGTCGAATTTAGTTGTCTCATTTTGTTCGCCATTGCCAGCAGCAGGTTCCTTTACGCGTTCGGCATTAAACAATAGTAGCGGCGTACGAACAACGATGAGCTGTGCGGTAACAGCGGTAGTGTTGACAATATCATTGGCATTATTCACCGATGCACTATACTACATTCCCAAGGCAACACTCGCGTCGGTCGTCATCTCAGCCATGCTATTTATGCCCGATTACGAAGAAATCGGTAACATTTGGCGTTCGAAGAAGATGGATCTGATTCCCTTTCTGGCAACCGCATTGGCTTGTTTGTTCTACGAGCTAGATTACGGTATTTTGGTAGGAATCGGATTAAATTGTTGCATTCTACTTTATCTGATGTCGACTCCCGGTCTATCAGGCGAAGAAATCCAACTTTCAGGACTT         ]




>consensus_5435#0
GGCGGCACGAGGGCGAAATGCGTTGATCGTGGTGGCAGGAGCTACGCTTGCTTATTATCT
TAAAACTGATATGGATGATTCTGTATTCAACTTAACTGGCCACGTGCCGGCTGGATTGCC
GGTCTTTCAGATGCCTCCTTTCTCGTACACGAATATAAATGGTACGGAGTACAGCTTTGG
GGACATGCTAAGCGTAATGCGAACATCCATCATAACGATTCCTCTGGTAACAACTCTTGA
AATTGTGTCGGTCGGAAAAGCCTTTTCCAAAGGAAAAATTATTGACGCGACACAAGAAAT
GATTGCACTTGGAATGTCGAATTTAGTTGTCTCATTTTGTTCGCCATTGCCAGCAGCAGG
TTCCTTTACGCGTTCGGCATTAAACAATAGTAGCGGCGTACGAACAACGATGAGCTGTGC
GGTAACAGCGGTAGTGTTGACAATATCATTGGCATTATTCACCGATGCACTATACTACAT
TCCCAAGGCAACACTCGCGTCGGTCGTCATCTCAGCCATGCTATTTATGCCCGATTACGA
AGAAATCGGTAACATTTGGCGTTCGAAGAAGATGGATCTGATTCCCTTTCTGGCAACCGC
ATTGGCTTGTTTGTTCTACGAGCTAGATTACGGTATTTTGGTAGGAATCGGATTAAATTG
TTGCATTCTACTTTATCTGATGTCGACTCCCGGTCTATCANGCGAAGAAATCCAACTTTC
AGGACTTACCGTGCTA

consensusID : consensus_5435#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 704
fasta sequence

                              [CCGCCATACCAGTGGTTATGGGATTTACCTTCGCCGCTTGTTTGACTATCGGGAGTGCCCAAATACGATCTCTACTGGGCATTAAGACGCAAGGAAAAAGCAGTGATTTTGTAACATCATGGACAAATGTATTCGCGCATCTAGATGAAGTACGAATGGCAGATTGTATTCTTGGTTGCTGTTCGATTGTTGTTCTTTGTTCACTAAGGCTTACAAAAGACTTGGGTGAAGGCAGATGGCGAATTTTTTTCAAATATCTGGTATTGTTGCGAAATGCGTTGATCGTGGTGGCAGGAGCTACGCTTGCTTATTATCTTAAAACTGATATGGATGTTTCTGTATTCAACTTAACTGGCCACGTGCCGGCTGGATTGCCGGTCTTTCAGATGCCTCCTTTCTCGTACACGAATATAAATGGTACTGAGTACAGCTTTGGGGACATGCTAAGCGTAATGCGAACATCCATCATAACGATTCCTCTGGTAACAACTCTTGAAATTGTGTCGGTCGGAAAAGCCTTTTCCAAAGGAAAAATTATTGACGCGACACAAGAAATGATTGCACTTGGAATGTCGAATTTAGTTGTCTCATTTTGTTCGCCATTGCCAGCAGCAGGTTCCTTTACGCGTTCGGCATTAAACAATAGTAGCGGCGTACGAACAACGATGAGCTGTGCGGTAACAGCGGTAGTGGTGACAATATCA]

[+] EMBL BM616065             [CCGCCATACCAGTGGTTATGGGATTTACCTTCGCCGCTTGTTTGACTATCGGGAGTGCCCAAATACGATCTCTACTGGGCATTAAGACGCAAGGAAAAAGCAGTGATTTTGTAACATCATGGACAAATGTATTCGCGCATCTAGATGAAGTACGAATGGCAGATTGTATTCTTGGTTGCTGTTCGATTGTTGTTCTTTGTTCACTAAGGCTTACAAAAGACTTGGGTGAAGGCAGATGGCGAATTTTTTTCAAATATCTGGTATTGTTGCGAAATGCGTTGATCGTGGTGGCAGGAGCTACGCTTGCTTATTATCTTAAAACTGATATGGATGTTTCTGTATTCAACTTAACTGGCCACGTGCCGGCTGGATTGCCGGTCTTTCAGATGCCTCCTTTCTCGTACACGAATATAAATGGTACTGAGTACAGCTTTGGGGACATGCTAAGCGTAATGCGAACATCCATCATAACGATTCCTCTGGTAACAACTCTTGAAATTGTGTCGGTCGGAAAAGCCTTTTCCAAAGGAAAAATTATTGACGCGACACAAGAAATGATTGCACTTGGAATGTCGAATTTAGTTGTCTCATTTTGTTCGCCATTGCCAGCAGCAGGTTCCTTTACGCGTTCGGCATTAAACAATAGTAGCGGCGTACGAACAACGATGAGCTGTGCGGTAACAGCGGTAGTGGTGACAATATCA]




>consensus_5435#1
CCGCCATACCAGTGGTTATGGGATTTACCTTCGCCGCTTGTTTGACTATCGGGAGTGCCC
AAATACGATCTCTACTGGGCATTAAGACGCAAGGAAAAAGCAGTGATTTTGTAACATCAT
GGACAAATGTATTCGCGCATCTAGATGAAGTACGAATGGCAGATTGTATTCTTGGTTGCT
GTTCGATTGTTGTTCTTTGTTCACTAAGGCTTACAAAAGACTTGGGTGAAGGCAGATGGC
GAATTTTTTTCAAATATCTGGTATTGTTGCGAAATGCGTTGATCGTGGTGGCAGGAGCTA
CGCTTGCTTATTATCTTAAAACTGATATGGATGTTTCTGTATTCAACTTAACTGGCCACG
TGCCGGCTGGATTGCCGGTCTTTCAGATGCCTCCTTTCTCGTACACGAATATAAATGGTA
CTGAGTACAGCTTTGGGGACATGCTAAGCGTAATGCGAACATCCATCATAACGATTCCTC
TGGTAACAACTCTTGAAATTGTGTCGGTCGGAAAAGCCTTTTCCAAAGGAAAAATTATTG
ACGCGACACAAGAAATGATTGCACTTGGAATGTCGAATTTAGTTGTCTCATTTTGTTCGC
CATTGCCAGCAGCAGGTTCCTTTACGCGTTCGGCATTAAACAATAGTAGCGGCGTACGAA
CAACGATGAGCTGTGCGGTAACAGCGGTAGTGGTGACAATATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5435#0      ------------------------------------------------------------
consensus_5435#1      CCGCCATACCAGTGGTTATGGGATTTACCTTCGCCGCTTGTTTGACTATCGGGAGTGCCC 60
                                                                                  

consensus_5435#0      ------------------------------------------------------------
consensus_5435#1      AAATACGATCTCTACTGGGCATTAAGACGCAAGGAAAAAGCAGTGATTTTGTAACATCAT 120
                                                                                  

consensus_5435#0      ------------------------------------------------------------
consensus_5435#1      GGACAAATGTATTCGCGCATCTAGATGAAGTACGAATGGCAGATTGTATTCTTGGTTGCT 180
                                                                                  

consensus_5435#0      ------------------------------------------------------------
consensus_5435#1      GTTCGATTGTTGTTCTTTGTTCACTAAGGCTTACAAAAGACTTGGGTGAAGGCAGATGGC 240
                                                                                  

consensus_5435#0      ----------------GGCGGCACGAGGGCGAAATGCGTTGATCGTGGTGGCAGGAGCTA 44
consensus_5435#1      GAATTTTTTTCAAATATCTGGTATTGTTGCGAAATGCGTTGATCGTGGTGGCAGGAGCTA 300
                                         ** *     ********************************

consensus_5435#0      CGCTTGCTTATTATCTTAAAACTGATATGGATGATTCTGTATTCAACTTAACTGGCCACG 104
consensus_5435#1      CGCTTGCTTATTATCTTAAAACTGATATGGATGTTTCTGTATTCAACTTAACTGGCCACG 360
                      ********************************* **************************

consensus_5435#0      TGCCGGCTGGATTGCCGGTCTTTCAGATGCCTCCTTTCTCGTACACGAATATAAATGGTA 164
consensus_5435#1      TGCCGGCTGGATTGCCGGTCTTTCAGATGCCTCCTTTCTCGTACACGAATATAAATGGTA 420
                      ************************************************************

consensus_5435#0      CGGAGTACAGCTTTGGGGACATGCTAAGCGTAATGCGAACATCCATCATAACGATTCCTC 224
consensus_5435#1      CTGAGTACAGCTTTGGGGACATGCTAAGCGTAATGCGAACATCCATCATAACGATTCCTC 480
                      * **********************************************************

consensus_5435#0      TGGTAACAACTCTTGAAATTGTGTCGGTCGGAAAAGCCTTTTCCAAAGGAAAAATTATTG 284
consensus_5435#1      TGGTAACAACTCTTGAAATTGTGTCGGTCGGAAAAGCCTTTTCCAAAGGAAAAATTATTG 540
                      ************************************************************

consensus_5435#0      ACGCGACACAAGAAATGATTGCACTTGGAATGTCGAATTTAGTTGTCTCATTTTGTTCGC 344
consensus_5435#1      ACGCGACACAAGAAATGATTGCACTTGGAATGTCGAATTTAGTTGTCTCATTTTGTTCGC 600
                      ************************************************************

consensus_5435#0      CATTGCCAGCAGCAGGTTCCTTTACGCGTTCGGCATTAAACAATAGTAGCGGCGTACGAA 404
consensus_5435#1      CATTGCCAGCAGCAGGTTCCTTTACGCGTTCGGCATTAAACAATAGTAGCGGCGTACGAA 660
                      ************************************************************

consensus_5435#0      CAACGATGAGCTGTGCGGTAACAGCGGTAGTGTTGACAATATCATTGGCATTATTCACCG 464
consensus_5435#1      CAACGATGAGCTGTGCGGTAACAGCGGTAGTGGTGACAATATCA---------------- 704
                      ******************************** ***********                

consensus_5435#0      ATGCACTATACTACATTCCCAAGGCAACACTCGCGTCGGTCGTCATCTCAGCCATGCTAT 524
consensus_5435#1      ------------------------------------------------------------
                                                                                  

consensus_5435#0      TTATGCCCGATTACGAAGAAATCGGTAACATTTGGCGTTCGAAGAAGATGGATCTGATTC 584
consensus_5435#1      ------------------------------------------------------------
                                                                                  

consensus_5435#0      CCTTTCTGGCAACCGCATTGGCTTGTTTGTTCTACGAGCTAGATTACGGTATTTTGGTAG 644
consensus_5435#1      ------------------------------------------------------------
                                                                                  

consensus_5435#0      GAATCGGATTAAATTGTTGCATTCTACTTTATCTGATGTCGACTCCCGGTCTATCANGCG 704
consensus_5435#1      ------------------------------------------------------------
                                                                                  

consensus_5435#0      AAGAAATCCAACTTTCAGGACTTACCGTGCTA 736
consensus_5435#1      --------------------------------