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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5442#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1274 fasta sequence
[TCAGCAGAATTGCCCCGAGGTNCATTTTGAAAATTGGGTTTGAAAACCTCAGATAAGTTGGTGATTAACGATTAAGTGTCGCTTTAAAACAACTAGTGTGGTTGACCTGTGCATACATTGTGACCAATAATTCGTTGTGTAATTACTCATAATATCCATTACAAGTTTTTCCAAGAAGTTTTTGAATTGCTTTCTTGGGTTTTTTGTCTCTGTTCAATTTCAATTTTTGTTTTAAACTTTGTGACTCACGATATTCTCNNNAGCATATTTCCAAAAATGTTAAGATTCGTTTCTAACTGTATTTGATTATTTCCCAAAAAAGTAGATTCATTTGGTTCTANCAAAATCATTTAACCGACTGCCAAACATTCGAAGAAATGGTTCAACCGTGAATATTGACGTGACACACGTTGGTTAAACGTCTTCTCGTAAGTGCCTTCACAACTACTTCTNNGGGAAACACCGTAACAACATCCTTTGGAGAAACTGACTCATAACAGAAGCTATCATGNGTCATAAACCTCCTTTANACTTCCGTCAACGTAATAACAAAACTGANCAAACCTAATANAACGCTTTACNGCCCAGACCGGTTACACCGGTTATNCATGTGTGGCCTTAACCTTGGTCGNTATACCCTTTATACGCCCTGGCTANAANNACAGACAGGGTCATTAATTGTAACCAGANNCGCAANCCCGAATACTTTNAGCCAACAATCTCTCATGTAACTGTATATATCTCCNGGCTCCNTATTANACANGCTTCNTTACTTAACTTTNCCCTTAACACACCTANACACACCCCCTNCCAACNTACCCTTCTTAACTTCCNAAATCAACAAATCCGTTTCCAACAAATATAATANACACATATNANTCTACAATAACACATGATAATTCACAACATGTGTGTACCAAATGCATNNATGTCATGTGGATCACTGAAAAATAAGTGACCCCCGNTTTGATAANGTTTATNCACGCCGCCACCGTTANTCTTAGTCACGNGNCTNTCCNCGAAAACAGCGCGGTGGGGATTNGTCAAACAANCCAGTTGCTATCTGATATAAAGTCCACCAGTTTAGTANGGATGCACACAGACACCCATTNANTGGAAGTGCCACCATAGAGTTCTATCCGACGNCCGTCAGTGATGNTATCAACCCGAAAAANCGACGGGTATATCGTCAGTAATGATGAAAAACCCGCTTTAGGTGGGNTAACCAAAGAATACAGCACCCCCCCCGTATTGAGTATCGTAGGATATATAAA]
[+] EMBL AL934843 [TCAGCAGAATTGCCCCGAGGTNCATTTTGAAAATTGGGTTTGAAAACCTCAGATAAGTTGGTGATTAACGATTAAGTGTCGCTTTAAAACAACTAGTGTGGTTGACCTGTGCATACATTGTGACCAATAATTCGTTGTGTAATTACTCATAATATCCATTACAAGTTTTTCCAAGAAGTTTTTGAATTGCTTTCTTGGGTTTTTTGTCTCTGTTCAATTTCAATTTTTGTTTTAAACTTTGTGACTCACGATATTCTCNNNAGCATATTTCCAAAAATGTTAAGATTCGTTTCTAACTGTATTTGATTATTTCCCAAAAAAGTAGATTCATTTGGTTCTANCAAAATCATTTAACCGACTGCCAAACATTCGAAGAAATGGTTCAACCGTGAATATTGACGTGACACACGTTGGTTAAACGTCTTCTCGTAAGTGCCTTCACAACTACTTCTNNGGGAAACACCGTAACAACATCCTTTGGAGAAACTGACTCATAACAGAAGCTATCATGNGTCATAAACCTCCTTTANACTTCCGTCAACGTAATAACAAAACTGANCAAACCTAATANAACGCTTTACNGCCCAGACCGGTTACACCGGTTATNCATGTGTGGCCTTAACCTTGGTCGNTATACCCTTTATACGCCCTGGCTANAANNACAGACAGGGTCATTAATTGTAACCAGANNCGCAANCCCGAATACTTTNAGCCAACAATCTCTCATGTAACTGTATATATCTCCNGGCTCCNTATTANACANGCTTCNTTACTTAACTTTNCCCTTAACACACCTANACACACCCCCTNCCAACNTACCCTTCTTAACTTCCNAAATCAACAAATCCGTTTCCAACAAATATAATANACACATATNANTCTACAATAACACATGATAATTCACAACATGTGTGTACCAAATGCATNNATGTCATGTGGATCACTGAAAAATAAGTGACCCCCGNTTTGATAANGTTTATNCACGCCGCCACCGTTANTCTTAGTCACGNGNCTNTCCNCGAAAACAGCGCGGTGGGGATTNGTCAAACAANCCAGTTGCTATCTGATATAAAGTCCACCAGTTTAGTANGGATGCACACAGACACCCATTNANTGGAAGTGCCACCATAGAGTTCTATCCGACGNCCGTCAGTGATGNTATCAACCCGAAAAANCGACGGGTATATCGTCAGTAATGATGAAAAACCCGCTTTAGGTGGGNTAACCAAAGAATACAGCACCCCCCCCGTATTGAGTATCGTAGGATATATAAA]
consensusID : consensus_5442#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 880 fasta sequence
[CTCTCACCCCATTCACACACGCACAGCACAACATTCCAACCCACAAGGTGTACAGATTGGAATCGAATCTAGCGAAGCACCCAACACCCAATCGAAGCATTAAATAGTGTAGTGTTTGACCCATCGAACAGGTGCATTTGTGGCAGAGCCCCGCAAAAGGGCCGCAGAGTACAGCCCTTTACTCTTATCCGAGTGTGTATTATTAGTCATTATGAGAAAACATGTATATGTATGTGTATGTGTGAGTGTATATATGCTTAGCACAAAGTACTTAGCTAAAGTAGAGCGAGAAACAAAAAAGAAGATAAAAAGGGACCCCTTAAAAAGGGGAGCTCCGGCAAGCTCAATACCGTTTAACCCTCAATCCCGTATCGAGAAGCAGTACTTTTGCTGCGTTTTTATTGCTTCAAACAAGGGTAAAAGTAACGAGATGCCCTTTGCGTTACATTCGAGAAGCGTTACGTGCGAAATGAAATTCCCAAGCTGCCTTTTGGTTGCACTTTTAAGAGAAATAATAGAACCAAAAATACAAATAGGATTTAATGAGATTAAAGCCTGTTCTGTCCAGTACTTTTTATTATATGGTCATGTTGAGGGCTAGTGAAAGACCAAAACTTTGAAAATTGGGTTTGATGACCTCAGATAAGTTGATGATTAACGATTAAGTGTCGCTTTAAAACAACTAGGGGTTGACCTGTGCATCATTGTGACCAATAATTCGTTGTGTAATTACTCATAACATCCAGTACAAGTTTTTCCAAGAAGTTTGGGATGCTTTCTTGGGGTTTTGTTTTGTTGATTTAATTTTGTTTTAAATTAAACTCACGATATTTTTACCATTTTCTTAAAATGTTTAGATTCGTCCCTAACTGTATCGATT]
[+] EMBL BX627734 [CTCTCACCCCATTCACACACGCACAGCACAACATTCCAACCCACAAGGTGTACAGATTGGAATCGAATCTAGCGAAGCACCCAACACCCAATCGAAGCATTAAATAGTGTAGTGTTTGACCCATCGAACAGGTGCATTTGTGGCAGAGCCCCGCAAAAGGGCCGCAGAGTACAGCCCTTTACTCTTATCCGAGTGTGTATTATTAGTCATTATGAGAAAACATGTATATGTATGTGTATGTGTGAGTGTATATATACTTAGCACAAAGTACTTAGCTAAAGTAGATCGAGAAACAAAAAAGAAGAT AAAAGGGACTCCTTAAAAAGGGGTGCTCCGGCAAGCTCAATACCGTTGAACCCTCAATCCCGTATCGAGAAGCAGTACTTTTGCTGCGTTTTTATTGCTTCAAACAAGGGCAAAAGTAAAGAGCTGCCCTTTACGTTACATTCGAGAAGCGTTACGTGCGAAATTAAATTCCCAAGCTGCCTTTTGGTTGCACTTTTAAGAGAAATAATATAACCAAAAATACAAATAGGATTTAATGAGATTAAAGCCTGTTCTGTCCAGTACTTTTTATTATATGGTCATGTTGAGGGCTAGTGAAAGACCAAAACTTTGAAAATTGGGTTTGATGACCTCAGATAAGTTGGTGATTAACGATTAAGTGTCGCTTTAAAACAACTAGGGGTTGACCTGTACATCATTGTGACCAATAATTCGTTGTGTAATTACTCATAACATCCAGTACAAGGATTTTCAAGTAGTTTTGGATGC ]
[+] EMBL BX628894 [ GTGCATTTGTGGCGGAGCCCCGCAAAAGGGCCGCAGATCACAGCCCTTTACTCTTATCCGAGTGTGTATTATTAGTCATTATGAGAAAACGTGTATATGTATGTGTATGTGTGAGTGTATATATGCTTAGCACAAAGTACTTAGCTAAAGTAGAGCGAGAAACAAAAAAGAAGATAAAAAGGGACCCCTTAAAAAGGGGAGCTCCGGCAAGCTCAATACCGTTTAACCCTCAATCCCGTATCGAGAAGCAGTACTTTTGCTGCGTTTTTATTGCTTCAAACAAGGGTAAAAGTAACGAGATGCCCTTTGCGTTACATTCGAGAAGCGTTACGTGCGAAATGAAATTCCCAAGCTGCCTTTTGGTTGCACTTTTAAGAGAAATAATAGAACCAAAAATACAAATAGGATTTAATGAGATTAAAGCCTGTTCTGTCCAGTACTTTTTATTATATGGTCATGTTGAGGGCTAGTGAAAGACCAAAACTTTGAAAATTGGGTTTGATGACCTCAGATAAGTTGATGATTAACGATTAAGTGTCGCTTTAAAACAACTAGGGGTTGACCTGTGCATCATTGTGACCAATAATTCGTTGTGTAATTACTCATAACATCCAGTACAAGTTTTTCCAAGAAGTTTGGGATGCTTTCTTGGG ]
[+] EMBL BX615573 [ TGTGAGTGTATATATGCTTAGCACAAAGTACTTTGCTAAAGTAGAGCGAGAAACAAAAAAGAAGATAAAAAGGGACCCCTTAAAAAGGGGAGCTCCGGCAAGCTCAATACCGTTTAACCCTCAATCCCGTATCGAGAAGCAGTACTTTTGCTGCGTTTTTATTGCTTCAAACAAGGGTAAAAGTAACGAGATGCCCTTTGCGTTACATTCGAGAAGCGTTACGTGCGAAATGAAATTCCCAAGCTGCCTTTTGGTTGCACTTTTAAGAGAAATAATAGAACCAAAAATACAAATAGGATTTAATGAGATTAAAGCCTGTTCTGTCCAGTACTTTTTATTATATGGTCATGTTGAGGGCTAGTGAAAGACCAAAACTTTGAAAATTGGGTTTGATGACCTCATATAAGTTGATGATTAACGATTAAGTGTCGCTTTAAAACAACTAGGGGTTGACCTGTGCATCATTGTGACCAATAATTCGTTGTGTAATTACTCATAACATCCAGTACAAGTTTTTCCAAGAAGTTTGGGATGCTTTCTTGGGGTTTTGTTTTGTTGATTTAATTTTGTTTTAAATTAAACTCACGATATTTTTACCATTTTCTTAAAATGTTTAGATTCGTCCCTAACTGTATCGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5442#0 TCAGCAGAATTGCCCCGAGGTNCATTTTGAAAATTGGGTTTGAAAACCTCAGATAAGTTG 60
consensus_5442#1 ------------------------------------------------------------
consensus_5442#0 GTGATTAACGATTAAGTGTCGCTTTAAAACAACTAGTGTGGTTGACCTGTGCATACATTG 120
consensus_5442#1 ------------------------------------------------------------
consensus_5442#0 TGACCAATAATTCGTTGTGTAATTACTCATAATATCCATTACAAGTTTTTCCAAGAAGTT 180
consensus_5442#1 ------------------------------------------------------------
consensus_5442#0 TTTGAATTGCTTTCTTGGGTTTTTTGTCTCTGTTCAATTTCAATTTTTGTTTTAAACTTT 240
consensus_5442#1 -------------------------------------------------CTCTCACCCCA 11
* * * *
consensus_5442#0 GTGACTCACGATATTCTCNNNAGCATATTTCCAAAAATGTTAAGATTCGTTTCTAACTGT 300
consensus_5442#1 TTCACACACGCACAGCACAACATTCCAACCCACAAGGTGTACAGATTGGAATCGAATC-T 70
* ** **** * * * * * ** *** ***** * ** ** *
consensus_5442#0 ATTTGATTATTTCCCAAAAAAGTAGATTCATTTGGTTCTANCAAAATCATTTAACCGACT 360
consensus_5442#1 AGCGAAGCACCCAACACCCAA-TCGAAGCATTAAATAGTGT----AGTGTTTGACCCAT- 124
* * * ** ** * ** **** * * * *** *** *
consensus_5442#0 GCCAAACATTCGAAGAAATGGTTCAACCGTG-AATATTGACGTGACACACGTTGGTTAAA 419
consensus_5442#1 --CGAACAGGTGCATTTGTGGCAGAGCCCCGCAAAAGGGCCGCAGAGTACAGCCCTTTA- 181
* **** * * *** * ** * ** * * ** ** ** *
consensus_5442#0 CGTCTTCTCGTAAGTGCCTTCACAACTACTTCTNNGGGAAACACCGTAACAACATCCTTT 479
consensus_5442#1 CTCTTATCCGAGTGTGTATTATTAGTCATT---ATGAGAAAACATGTATATGTATGTGTA 238
* * ** *** ** * * * * **** *** ** *
consensus_5442#0 GGAGAAACTGACTCATAACAGAAGCTATCATGNGTCATAAACCTCCTTTANACTTCCGTC 539
consensus_5442#1 TGTGTGAGTG-----TATATATGCTTAGCACAAAGTACTTAGCTAAAGTAGAG--CGAGA 291
* * * ** ** ** ** * * ** ** * *
consensus_5442#0 AACGTAATAACAAAACTGANCAAACCTAATANAACGCTTTACNGCCCAGACCGGTT--AC 597
consensus_5442#1 AACAAAAAAGAAGATAAAAAGGGACCCCTTAAAAAGG---GGAGCTCCGGCAAGCTCAAT 348
*** ** * * * * *** ** ** * ** * * * * * *
consensus_5442#0 ACCGGTTATNCATGTGTGGCCTTAACCTTGGTCGNTATACCCTTTATACGCCCTGGCTAN 657
consensus_5442#1 ACCGTTTAACCCT---CAATCCCGTATCGAGAAGCAGTACTTTTGCTGCGTTTT---TAT 402
**** *** * * * * * *** ** * ** * **
consensus_5442#0 AANNACAGACAGGGTCATTAATTGTAACCAGANNCGCAANCCCGAATACTTTNAGCCAAC 717
consensus_5442#1 TGCTTCAAACAAGGG---TAAAAGTAACGAGATGCCC--TTTGCGTTACATTCGAGAAGC 457
** *** ** *** ***** *** * * *** ** * *
consensus_5442#0 AATCTCTCATGTAACTGTATATATCTCCNGGCTCCNTATTANACANGCTTCNTTACTTAA 777
consensus_5442#1 G-----TTACGTGCGAAATGAAATTCCCAAGCTGCCTTTTGGTTGCACTTTTAAGAGAAA 512
* * ** * ** ** *** * * ** *** **
consensus_5442#0 CTTTNCCCTTAACACACCTANACACACCCCCTNCCAACNTACCCTTCTTAACTTCCNAAA 837
consensus_5442#1 ---------TAATAGAACCAAAAATACAAATAG--GATTTAATGAGATTAAAG-CCTGTT 560
*** * * * * * * ** * ** **** **
consensus_5442#0 TCAACAAATCCGTTTCCAACAAATATAATANACACATATNANTCTACAATAACACATGAT 897
consensus_5442#1 CTGTCCAGTACTTTT--------TATTATATGGTCATGTTGAGGGCTAGTGAAAGACCAA 612
* * * * *** *** *** *** * * * * * * *
consensus_5442#0 AATTCACAACATGTGTGTACCAAATGCATNNATGTCATGTGGATCACTGAAAAATAAGTG 957
consensus_5442#1 AACTTTGAAAAT---TGGGTTTGATG-ACCTCAGATAAGTTGATGATTAACGATTAAGTG 668
** * ** ** ** *** * * * ** *** * * * * ******
consensus_5442#0 ACCCCC--GNTTTGATAANGTTTATNCACGCCGCCACCGTTANTCTTAGTCACGNGNCTN 1015
consensus_5442#1 TCGCTTTAAAACAACTAGGGGTTGACCTGTGCATCATTGTGACCAATAATTCGTTGTGTA 728
* * ** * ** * * ** ** * ** * * *
consensus_5442#0 TCCNCGAAAACAGCGCGGTGGGGATTNGTCAAACAANCC--AGTTGCTATCT--GATATA 1071
consensus_5442#1 ATTACTCATAACATCCAGTACAAGTTTTTCCAAGAAGTTTGGGATGCTTTCTTGGGGTTT 788
* * * * ** ** ** ** ** * **** *** * *
consensus_5442#0 AAGTCCACCAGTTTAGTANGGATGCACACAGACACCCATTNANTGGAAGTGCCACCATAG 1131
consensus_5442#1 TGTTTTGTTGATTTAATTTTGTTTTAAATTAAACTCACGATATTTTTACCATTTTCTTAA 848
* **** * * * * * * * * * * * **
consensus_5442#0 AGTTCTATCCGACGNCCGTCAGTGATGNTATCAACCCGAAAAANCGACGGGTATATCGTC 1191
consensus_5442#1 AATGTTT----AGATTCGTCCCTAACTGTATCGATT------------------------ 880
* * * * **** * * **** *
consensus_5442#0 AGTAATGATGAAAAACCCGCTTTAGGTGGGNTAACCAAAGAATACAGCACCCCCCCCGTA 1251
consensus_5442#1 ------------------------------------------------------------
consensus_5442#0 TTGAGTATCGTAGGATATATAAA 1274
consensus_5442#1 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||