cluster # 5457

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5457 cluster # 5457 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5457#0 length = 687 sequences # 1

consensus_5457#1 length = 668 sequences # 1
consensus_5457#2 length = 655 sequences # 2

consensusID : consensus_5457#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence

                              [CCGCCCACGCGTCCGGTGAATTAAGTGGTTGAAAAACTAACGCGCAACCGTTTTGCCTTCGATTGTTGTTTGTTTCCAATACGCAAACGTAAAACGCAAAAATGGCAGAGGACGATCAACGACTTGCCTCTATTCAAAACGAATATCTCAACTTCCTTGATGACGAGGAAGACCAGGGTACATACACGGCCCACGTACGAAAAATGATCAACGATAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGGCGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCGTTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAGGAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCGTTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCGCTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATGGAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCTACCCGACTAAGGATGACGATGGCAACCTGCTGGAGACGGAGTTTGGCCTGTCGGTGTACAAAGACCATCAAACGCTTA]

[+] EMBL BM575466             [CCGCCCACGCGTCCGGTGAATTAAGTGGTTGAAAAACTAACGCGCAACCGTTTTGCCTTCGATTGTTGTTTGTTTCCAATACGCAAACGTAAAACGCAAAAATGGCAGAGGACGATCAACGACTTGCCTCTATTCAAAACGAATATCTCAACTTCCTTGATGACGAGGAAGACCAGGGTACATACACGGCCCACGTACGAAAAATGATCAACGATAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGGCGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCGTTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAGGAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCGTTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCGCTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATGGAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCTACCCGACTAAGGATGACGATGGCAACCTGCTGGAGACGGAGTTTGGCCTGTCGGTGTACAAAGACCATCAAACGCTTA]




>consensus_5457#0
CCGCCCACGCGTCCGGTGAATTAAGTGGTTGAAAAACTAACGCGCAACCGTTTTGCCTTC
GATTGTTGTTTGTTTCCAATACGCAAACGTAAAACGCAAAAATGGCAGAGGACGATCAAC
GACTTGCCTCTATTCAAAACGAATATCTCAACTTCCTTGATGACGAGGAAGACCAGGGTA
CATACACGGCCCACGTACGAAAAATGATCAACGATAAGAGTAAACGGTTGGTTGTAAATA
TTAACGACATCCGGCGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTG
ATGAGCAGCTGGCGTTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCT
ACGCAAAGACGCAGGAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATG
TAACTCCACGCTCGTTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCG
TGACGAAGGTATCGCTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGA
CGAAGAAGGTGATGGAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCA
GTGCCGTCTACCCGACTAAGGATGACGATGGCAACCTGCTGGAGACGGAGTTTGGCCTGT
CGGTGTACAAAGACCATCAAACGCTTA

consensusID : consensus_5457#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGTAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGGCGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCGTTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAGGAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCGTTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCGCTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATGGAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCTACCCGACTAAGGGATGACGATGGCAACCTGCTGGAGACGGAGTTTGGGCCTGTCGGTGTACAAAGACCATCAAACGCTTAGCATTCAGGAAATGCCAGAGAAAGCCCCCGCGGGTCAGCTGCCCCGTTTCGGGGGGACGTTGTGTGCGACGATGATCTAGTTGATCGTTGCAAACCGGGCGATCGTGTACAGATCGTGGGTTAACTACCGTTGTCTGCCCGGAAAAGCAGGGTGGATACACAACGG]

[+] EMBL BM587408             [CCGCGGACGCGTGGGCGGACGCGTGGGTAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGGCGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCGTTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAGGAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCGTTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCGCTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATGGAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCTACCCGACTAAGGGATGACGATGGCAACCTGCTGGAGACGGAGTTTGGGCCTGTCGGTGTACAAAGACCATCAAACGCTTAGCATTCAGGAAATGCCAGAGAAAGCCCCCGCGGGTCAGCTGCCCCGTTTCGGGGGGACGTTGTGTGCGACGATGATCTAGTTGATCGTTGCAAACCGGGCGATCGTGTACAGATCGTGGGTTAACTACCGTTGTCTGCCCGGAAAAGCAGGGTGGATACACAACGG]




>consensus_5457#1
CCGCGGACGCGTGGGCGGACGCGTGGGTAAGAGTAAACGGTTGGTTGTAAATATTAACGA
CATCCGGCGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCA
GCTGGCGTTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAA
GACGCAGGAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCC
ACGCTCGTTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAA
GGTATCGCTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAA
GGTGATGGAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGT
CTACCCGACTAAGGGATGACGATGGCAACCTGCTGGAGACGGAGTTTGGGCCTGTCGGTG
TACAAAGACCATCAAACGCTTAGCATTCAGGAAATGCCAGAGAAAGCCCCCGCGGGTCAG
CTGCCCCGTTTCGGGGGGACGTTGTGTGCGACGATGATCTAGTTGATCGTTGCAAACCGG
GCGATCGTGTACAGATCGTGGGTTAACTACCGTTGTCTGCCCGGAAAAGCAGGGTGGATA
CACAACGG

consensusID : consensus_5457#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 655
fasta sequence

                              [GTTGAAATTGTTGCCACGCCAGTCGGTCTGTGTGCTTGTACGTTTTACTTCGCTGTGCTCCGTGAATTAAGTGGGTGAAAAACTAACGCGCAACCGTTTTGCCTTCGATTGTTGTTTGTTTCCAATACGCAAACGTAAAACGCAAAAATGGCAGAGGACGATCAACGACTTGCCTCTATTCAAAACGAATATCTCAACTTCCTTGATGACGAGGAAGACCAGGGTACATACACGGCCCACGTACGAAAAATGATCAACGATAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGGCGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCGTTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAGGAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCGTTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCGCTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATGGAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCT]

[+] EMBL CNS08ZQ2             [GTTGAAATTGTTGCCACGCCAGTCGGTCTGTGTGCTTGTACGTTTTACTTCGCTGTGCTCCGTGAATTAAGTGGGTGAAAAACTAACGCGCAACCGTTTTGCCTTCGATTGTTGTTTGTTTCCAATACGCAAACGTAAAACGCAAAAATGGCAGAGGACGATCAACGACTTGCCTCTATTCAAAACGAATATCTCAACTTCCTTGATGACGAGGAAGACCAGGGTACATACACGGCCCACGTACGAAAAATGATCAACGATAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGGCGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCGTTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAGGAAGACTTT                                                                                                                                                                                                                                  ]
[+] EMBL BM640081             [                     ccgGGTCTGTGTGCTTGTACGTTTTACTTCGCTGTGCTCCGTGAATTAAGTGGTTGAAAAACTAACGCGCAACCGTTTTGCCTTCGATTGTTGTTTGTTTCCAATACGCAAACGTAAAACGCAAAAATGGCAGAGGACGATCAACGACTTGCCTCTATTCAAAACGAATATCTCAACTTCCTTGATGACGAGGAAGACCAGGGTACATACACGGCCCACGTACGAAAGATGATCAACGATAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGGCGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCGTTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAGGAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCGTTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCGCTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATGGAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCT]




>consensus_5457#2
GTTGAAATTGTTGCCACGCCAGTCGGTCTGTGTGCTTGTACGTTTTACTTCGCTGTGCTC
CGTGAATTAAGTGGGTGAAAAACTAACGCGCAACCGTTTTGCCTTCGATTGTTGTTTGTT
TCCAATACGCAAACGTAAAACGCAAAAATGGCAGAGGACGATCAACGACTTGCCTCTATT
CAAAACGAATATCTCAACTTCCTTGATGACGAGGAAGACCAGGGTACATACACGGCCCAC
GTACGAAAAATGATCAACGATAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGG
CGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCG
TTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAG
GAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCG
TTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCG
CTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATG
GAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5457#0      ----------------------------------------------CCGCCCACGCGTCC 14
consensus_5457#2      GTTGAAATTGTTGCCACGCCAGTCGGTCTGTGTGCTTGTACGTTTTACTTCGCTGTGCTC 60
consensus_5457#1      ------------------------------------------------------------
                                                                                  

consensus_5457#0      GGTGAATTAAGTGGTTGAAAAACTAACGCGCAACCGTTTTGCCTTCGATTGTTGTTTGTT 74
consensus_5457#2      CGTGAATTAAGTGGGTGAAAAACTAACGCGCAACCGTTTTGCCTTCGATTGTTGTTTGTT 120
consensus_5457#1      ------------------------------------------------------------
                                                                                  

consensus_5457#0      TCCAATACGCAAACGTAAAACGCAAAAATGGCAGAGGACGATCAACGACTTGCCTCTATT 134
consensus_5457#2      TCCAATACGCAAACGTAAAACGCAAAAATGGCAGAGGACGATCAACGACTTGCCTCTATT 180
consensus_5457#1      ------------------------------------------------------------
                                                                                  

consensus_5457#0      CAAAACGAATATCTCAACTTCCTTGATGACGAGGAAGACCAGGGTACATACACGGCCCAC 194
consensus_5457#2      CAAAACGAATATCTCAACTTCCTTGATGACGAGGAAGACCAGGGTACATACACGGCCCAC 240
consensus_5457#1      ----------------------------------------------------CCGCGGAC 8
                                                                          * **  **

consensus_5457#0      GTACGAAAAATGATCAACGATAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGG 254
consensus_5457#2      GTACGAAAAATGATCAACGATAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGG 300
consensus_5457#1      GCGTGGGCGG-ACGCGTGGGTAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGG 67
                      *   *         *   * ****************************************

consensus_5457#0      CGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCG 314
consensus_5457#2      CGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCG 360
consensus_5457#1      CGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCG 127
                      ************************************************************

consensus_5457#0      TTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAG 374
consensus_5457#2      TTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAG 420
consensus_5457#1      TTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAG 187
                      ************************************************************

consensus_5457#0      GAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCG 434
consensus_5457#2      GAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCG 480
consensus_5457#1      GAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCG 247
                      ************************************************************

consensus_5457#0      TTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCG 494
consensus_5457#2      TTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCG 540
consensus_5457#1      TTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCG 307
                      ************************************************************

consensus_5457#0      CTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATG 554
consensus_5457#2      CTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATG 600
consensus_5457#1      CTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATG 367
                      ************************************************************

consensus_5457#0      GAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCTACCCG 614
consensus_5457#2      GAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCT----- 655
consensus_5457#1      GAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCTACCCG 427
                      *******************************************************     

consensus_5457#0      ACTAAGG-ATGACGATGGCAACCTGCTGGAGACGGAGTTTGG-CCTGTCGGTGTACAAAG 672
consensus_5457#2      ------------------------------------------------------------
consensus_5457#1      ACTAAGGGATGACGATGGCAACCTGCTGGAGACGGAGTTTGGGCCTGTCGGTGTACAAAG 487
                                                                                  

consensus_5457#0      ACCATCAAACGCTTA--------------------------------------------- 687
consensus_5457#2      ------------------------------------------------------------
consensus_5457#1      ACCATCAAACGCTTAGCATTCAGGAAATGCCAGAGAAAGCCCCCGCGGGTCAGCTGCCCC 547
                                                                                  

consensus_5457#0      ------------------------------------------------------------
consensus_5457#2      ------------------------------------------------------------
consensus_5457#1      GTTTCGGGGGGACGTTGTGTGCGACGATGATCTAGTTGATCGTTGCAAACCGGGCGATCG 607
                                                                                  

consensus_5457#0      ------------------------------------------------------------
consensus_5457#2      ------------------------------------------------------------
consensus_5457#1      TGTACAGATCGTGGGTTAACTACCGTTGTCTGCCCGGAAAAGCAGGGTGGATACACAACG 667
                                                                                  

consensus_5457#0      -
consensus_5457#2      -
consensus_5457#1      G 668