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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1017 fasta sequence
[TGGCAGGCAGGAGGGAAGCGATAGAAGGCGATTGCTCGAGTGTGTGGCAGCTGCAAACACAAACAACAAGGACATCGTAAAAAAAGGACCGCCAATGAATACCAGCAATTACGAGGAGCTGGGTGTGATTGGTACAGGAGCTTACGGTACCGTTTACAGGGCACGGGATCTGAAGAATGCTGGTACAATCGTCGCACTGAAGAAGGTGCGCGTCGCACTGACCGAAGATGGCGTCCCGATGTCGACGTTGCGGGAAATTTTCATGCTCAAACAACTCGACACCTTTGGGCATCCGAATGTGGTGAAACTCCTAGATGTGTGTCAAGGGCAACGGCTANAGCGCGAAGGGCAGTTGGTGCTGTTTCTAGTGTTCGAGCATCTGGATCACGATCTGGATGAGTACATTAAGCGTCTACCACCGAAAGGAATGCCTCCGGCCACTATACAGCGACTATCGCGCGAAATGCTTACCGGCATCGACTTCCTGCACTCGCACCGCATCATCCACCGGGACTTGAAGCCGCAGAATCTCCTCATCTCGAGCGACGGCCACCTGAAGCTGGCCGACTTTGGGCTCGCCAAAACGTACGACTTTGAGATGAAGCTAACGACGGTTGTGGTGACGCTTTGGTACCGTGCTCCGGAAGTCCTGCTTGGCGAAGCGTACAACAGNTCGGTCGACATCTGGAGTGCGGGCTGTATCATTGCGGAAATGTTCCAGCGGCAAGCGTTGTTCCCGGGCACGGCCGAGGGCAATCAGCTGGAACGAATATTCGAATTAACTGGCCGCCCATCGGAAGCGCAGTGGCCGAGGGGCATTTCGATCGTGCGGGAAAACTTCCGCTCCACCCAGCGGCGGGAACCGCGCGAATTCTGNCCGAAGATGTGCGACAATGCGAACGATCTCCTAAAGAGCATGCTCGCCTTCAGCCGGCACGAACGTCCGTCCGCAAGGNAGTGCCTTAACCATGCCTACTTCAACAGGAACCGATGCCGACGTAAGGGAGCATCNCCTTA]
[+] EMBL BX623960 [TGGCAGGCAGGAGGGAAGCGATAGAAGGCGATTGCTCGAGTGTGTGGCAGCTGCAAACACAAACAACAAGGACATCGTAAAAAAAGGACCGCCAATGAATACCAGCAATTACGAGGAGCTGGGTGTGATTGGTACAGGAGCTTACGGTACCGTTTACAGGGCACGGGATCTGAAGAATGCTGGTACAATCGTCGCACTGAAGAAGGTGCGCGTCGCACTGACCGAAGATGGCGTCCCGATGTCGACGTTGCGGGAAATTTTCATGCTCAAACAACTCGACACCTTTGGGCATCCGAATGTGGTGAAACTCCTAGATGTGTGTCAAGGGCAACGGCTANAGCGCGAAGGGCAGTTGGTGCTGTTTCTAGTGTTCGAGCATCTGGATCACGATCTGGATGAGTACATTAAGCGTCTACCACCGAAAGGAATGCCTCCGGCCACTATACAGCGACTATCGCGCGAAATGCTTACCGGCATCGACTTCCTGCACTCGCACCGCATCATCCACCGGGACTTGAAGCCGCAGAATCTCCTCATCTCGAGCGACGGCCACCTGAAGCTGGCCGACTTTGGGCTCGCCAAAACGTACGACTTTGAGATGAAGCTAACGACGGTTGTGGTGACGCTTTGGTACCGTGCTCCGGAAGTCCTGCTTGGCGAAGCGTACAACAGNTCGGTCGACATCTGGAGTGCGGGCTGTATCATTGCGGAAATGTTCCAGCGGCAAGCGTTGT ]
[+] EMBL BX625194 [ CTTACGGTACCGTTTACAGGGCACGGGATCTGAAGAATGCTGGTACAATCGTCGCACTGAAGAAGGTGCGCGTCGCACTGACCGAAGATGGCGTCCCGATGTCGACGTTGCGGGAAATTTTCATGCTCAAACAACTCGACACCTTTGGGCATCCGAATGTGGTGAAACTCCTAGATGTGTGTCAAGGGCAACGGCTAGAGCGCGAAGGGCAGTTGGTGCTGTTTCTAGTGTTCGAGCATCTGGATCACGATCTGGATGAGTACATTAAGCGTCTACCACCGAAAGGAATGCCTCCGGCCACTATACAGCGACTATCGCGCGAAATGCTTACCGGCATCGACTTCCTGCACTCGCACCGCATCATCCACCGGGACTTGAAGCCGCAGAATCTCCTCATCTCGAGCGACGGCCACCTGAAGCTGGCCGACTTTGGGCTCGCCAAAACGTACGACTTTGAGATGAAGCTAACGACGGTTGTGGTGACGCTTTGGTACCGTGCTCCGGAAGTCCTGCTTGGCGAAGCGTACAACAGCTCGGTCGACATCTGGAGTGCGGGCTGTATCATTGCGGAAATGTTCCAGCGGCAAGCGTTGTTCCCGGGCACGGCCGAGGGCAATCAGCTGGAACGAATATTCGAATTAACTGGCCGCCCATCGGAAGCGCAGTGGCCGAGGGGCATTTCGATCGTGCGGGAAAACTTCCGCTCCACCCAGCGGCGGGAACCGCGCGAATTCTGNCCGAAGATGTGCGACAATGCGAACGATCTCCTAAAGAGCATGCTCGCCTTCAGCCGGCACGAACGTCCGTCCGCAAGGNAGTGCCTTAACCATGCCTACTTCAACAGGAACCGATGCCGACGTAAGGGAGCATCNCCTTA]
consensusID : consensus_5465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence
[CATGCTGCCCTTTTTTTTTANTTTTTTTCTGGTTTGAACTGCTGCGTTTTTTTTATTACTGTATACATATATAATTAAAATAATTCATAAAATTCACTGCACTGTATACTTTTGCCTTCCTTACACAGCTAAAGCGGGCACTGTATAAAAAGACACGCAAACACGAACGAACGAGTTCAATTTAAAGCAGCTTATATAAGGGGGGTCACAGAGCGCGACAGCTTGACCTAATTCTAGCAAACAATTATAATCATTGTAATTGTAATGTTCAAATTATAATTACAATTATTATAATTATCAAAGGTAATAATAAATGAAAATAAGTATAATCAAAACTAATTCTATTTCTTAAAACAATATCTCTGAAGTCTCTGAAATCCAAAACAAGAAAATGAGCGAAAAATAAATGACACCAAAGTTTTCACTAACCCAACTACACGCCTTTCTCCTATTTCCTTCTTGTTTCCCACTGCTTTCTCCCCATTTTTTGCTATCTCCCTCTGTTTGCCTTACCTAACAATATCGAGCAAAAAAAAACGAACAATATGATGGCTGTGACTGTGTATGGAGGGAGGGAAAGAGACAGGCAGCAATACCAAAATATTCATATCATAAAGATCGTTGCCTACTCACTAGTAGTTGTAGCTAGTAGNTAGTACACAAATTCGTTGGCAGTCCGGGTTACNGGTAATTTCACTANTCTAGTACTGTAATGCCTCGTGCCGAATTCTNGGCTCGCAGGGCAATCCCTATNGGAGTCGTTTAAATCAN]
[+] EMBL BX466704 [CATGCTGCCCTTTTTTTTTANTTTTTTTCTGGTTTGAACTGCTGCGTTTTTTTTATTACTGTATACATATATAATTAAAATAATTCATAAAATTCACTGCACTGTATACTTTTGCCTTCCTTACACAGCTAAAGCGGGCACTGTATAAAAAGACACGCAAACACGAACGAACGAGTTCAATTTAAAGCAGCTTATATAAGGGGGGTCACAGAGCGCGACAGCTTGACCTAATTCTAGCAAACAATTATAATCATTGTAATTGTAATGTTCAAATTATAATTACAATTATTATAATTATCAAAGGTAATAATAAATGAAAATAAGTATAATCAAAACTAATTCTATTTCTTAAAACAATATCTCTGAAGTCTCTGAAATCCAAAACAAGAAAATGAGCGAAAAATAAATGACACCAAAGTTTTCACTAACCCAACTACACGCCTTTCTCCTATTTCCTTCTTGTTTCCCACTGCTTTCTCCCCATTTTTTGCTATCTCCCTCTGTTTGCCTTACCTAACAATATCGAGCAAAAAAAAACGAACAATATGATGGCTGTGACTGTGTATGGAGGGAGGGAAAGAGACAGGCAGCAATACCAAAATATTCATATCATAAAGATCGTTGCCTACTCACTAGTAGTTGTAGCTAGTAGNTAGTACACAAATTCGTTGGCAGTCCGGGTTACNGGTAATTTCACTANTCTAGTACTGTAATGCCTCGTGCCGAATTCTNGGCTCGCAGGGCAATCCCTATNGGAGTCGTTTAAATCAN]
consensusID : consensus_5465#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence
[CCGCCGCAAGGCAGTGCCTTAACCATGCCTACTTCAAACAGGAACCGATGCCGACGTAAGGGGCTCCCACTACCTCCCCTCAGCATCGCCTTACCGGTAGGTAAATCGCACACACACACAAACGCAAACAAACTATCACATGGATAATAATGATAAGGATATACAACGAAACGGTAGGCGTAAAATCGACACCGTCAACACAAAAACACCTTCGGGGGGGAAGAAGGCAAGAACGCTTCTTCTGCCTACATTACAGTACTAGAGTTAGTGAAATTACCAGTAAACCCGGACTGCCAACGAAATTGTGTACTACTACTACTACTACTACTACTATTGCTAGTAGTAGCAACGATCTTATGATATGAATATTTTGGTATTGCTGCCTGTCTCTTTCCCTCCCTCCATACACAGTCACAGCCATCATATGTTCGTTTTTTTTGCTCGATATTGTTAGGTAAGGCAAACAGAGGGACACAGCAAACAATGGGGAGAAAGCAGAGGGAAACAAGAAGGAAATCAGAGCTAGGCGTGTAGTTGGGTTAGTGAAAACTTTGGTGTCATGTATTTTTCACTCATTTTCTTGTTTTGGATTTCAGAGACTTCAGAGATATTTTTTTTTAAGAAATAGAATTAGTCTTGATTATACTTATTTTCATTT]
[+] EMBL BM639783 [CCGCCGCAAGGCAGTGCCTTAACCATGCCTACTTCAAACAGGAACCGATGCCGACGTAAGGGGCTCCCACTACCTCCCCTCAGCATCGCCTTACCGGTAGGTAAATCGCACACACACACAAACGCAAACAAACTATCACATGGATAATAATGATAAGGATATACAACGAAACGGTAGGCGTAAAATCGACACCGTCAACACAAAAACACCTTCGGGGGGGAAGAAGGCAAGAACGCTTCTTCTGCCTACATTACAGTACTAGAGTTAGTGAAATTACCAGTAAACCCGGACTGCCAACGAAATTGTGTACTACTACTACTACTACTACTACTATTGCTAGTAGTAGCAACGATCTTATGATATGAATATTTTGGTATTGCTGCCTGTCTCTTTCCCTCCCTCCATACACAGTCACAGCCATCATATGTTCGTTTTTTTTGCTCGATATTGTTAGGTAAGGCAAACAGAGGGACACAGCAAACAATGGGGAGAAAGCAGAGGGAAACAAGAAGGAAATCAGAGCTAGGCGTGTAGTTGGGTTAGTGAAAACTTTGGTGTCATGTATTTTTCACTCATTTTCTTGTTTTGGATTTCAGAGACTTCAGAGATATTTTTTTTTAAGAAATAGAATTAGTCTTGATTATACTTATTTTCATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5465#0 --------TGGCAGGCAGGAGGGAAGCGATAGAAGGCGATTGCTCGAGTGTGTGGCAGCT 52
consensus_5465#2 -------------------------CCGCCGCAAGGCAGTGCCTTAACCATGC--CTACT 33
consensus_5465#1 CATGCTGCCCTTTTTTTTTANTTTTTTTCTGGTTTGAACTGCTGCGTTTTTTTTATTACT 60
* * * **
consensus_5465#0 GCAAACACAAACAACAAGGACATCGTAAAAAAAGGACCGCCAATGAATACCAGCAATTAC 112
consensus_5465#2 TCAAACAGGAAC--CGATGCCGACGTA----AGGGGCTCCCACTACCTCCCCTCAGCATC 87
consensus_5465#1 GTATACATATATAATTAAAATAATTCATAAAATTCACTGC-ACTGTATACTTTTGCCTTC 119
* *** * * * * * * * * * * *
consensus_5465#0 ---GAGGAGCTGG-GTGTGATTGGTACAGGAGCTTACGGTACCGTTTACAGGGCACGGGA 168
consensus_5465#2 ---GCCTTACCGGTAGGTAAATCGCACA----CACACACAAACGCAAACAAACTAT--CA 138
consensus_5465#1 CTTACACAGCTAAAGCGGGCACTGTATAAAAAGACACGCAAACACGAACGAACGAGTTCA 179
* * * * * ** * * ** * *
consensus_5465#0 TCTGAAGAATGCTGGTACAATCGTCGCACTGAAGAAGGTGCGCGTCGCACTGACC-GAAG 227
consensus_5465#2 CATGGATAATAATGATAAGGATAT-ACAACGAA-ACGGTAGGCGTAAAATCGAC--ACCG 194
consensus_5465#1 ATTTAAAGCAGCTTATATAAGGGG------GGTCACAGAGCGCGACAGCTTGACCTAATT 233
* * * ** * * * *** ***
consensus_5465#0 ATGGCGTCCCGATGTCGACGTTGCGG--GAAATTTTCATGCTCAAACAACTCGACACCTT 285
consensus_5465#2 TCAACACAAAAACACCTTCGGGGGGG--AAGAAGGCAAGAACGCTTCTTCTGCCTACATT 252
consensus_5465#1 CTAGCAAACAATTATAATCATTGTAATTGTAATGTTCAAATT---ATAATTACAATTATT 290
* * * * * * **
consensus_5465#0 TGGGCATCCGAATGTGGTGA--AACTCCTAGATGTGTGTCAAGGGCAACGGCTANAGCGC 343
consensus_5465#2 ACAGTACTAGAGT-TAGTGA--AATTACCAG---TAAACCCGGACTGCCAACGAAATTGT 306
consensus_5465#1 ATAATTATCAAAGGTAATAATAAATGAAAATAAGTATAATCAAAACTAATTCTATTTCTT 350
* * * * ** * * * *
consensus_5465#0 GAAGGGCAGTTGGTGCTGTTTCTAGTGTT-CGAGCATCTGGATCACGATCTGGATGAGTA 402
consensus_5465#2 GTACTACTACTACTACTACTACTACTATTGCTAGTAGTAGCA--ACGATCT-------TA 357
consensus_5465#1 AAAACAATATCTCTGAAGTCTCTGAAATCCAAAACAAGAAAATGAGCGAAAAATAAATGA 410
* * ** * * * * * *
consensus_5465#0 CATTAA-GCGTCTACCACCGAAAGGA-ATGCCTCCGGCCACTATACAGCGACTATCGCGC 460
consensus_5465#2 TGATAT-GAATATTTTG------GTA-TTGCTGCCTGTCTCTTTCC--CTCCCTCCATAC 407
consensus_5465#1 CACCAAAGTTTTCACTAACCCAACTACACGCCTTTCTCCTATTTCCTTCTTGTTTCCCAC 470
* * * * ** * * * * * * *
consensus_5465#0 GAAATGCTTACCGGCATCGACTTCCTGCACTCGCACCGCATCATCCACCGGGACTTGAAG 520
consensus_5465#2 ACAGTCACAGCCATCATATGTTCGTTTTTTTTGCTCGATATTGTTAGGTAAGGC---AAA 464
consensus_5465#1 TGCTTTCTCCCCATTTTTTGCTATCTCCCTCTGTTT-GCCTTACCTAACAATATC--GAG 527
* ** * * * * * *
consensus_5465#0 CCGCAGAATCTCCTCATCTCGAGCGACG-GCCACCTGAAGCTGGCCGACTTTGGGCTCGC 579
consensus_5465#2 CAGAGGGA------CACAGCAAACAATG-GGGAGAAAGCAGAGGGAAACAAGAAGGAAAT 517
consensus_5465#1 CAAAAAAA---------AACGAACAATATGATGGCTGTGACTGTGTATGGAGGGAGGGAA 578
* * * * * * * *
consensus_5465#0 CAAAACGTACGACTTTGAGATGAAGCTAACGACGGTTGTGGTGACGCTTTGGTACCGTGC 639
consensus_5465#2 CAGAGC---TAGGCGTGTAGTTGGGTTAGTGAAAACTTTGGTGTCATGTATTTTTCACTC 574
consensus_5465#1 AGAGAC---AGGCAGCAATACCAAAATATTCA----TATCATAAAGATCGTTGCCTACTC 631
* ** * * * * *
consensus_5465#0 -TCCGGAAGTCCTGCTTGGCGAAGCGTACAACAGNTCGGTCGACATCTGGAGTGCGGGCT 698
consensus_5465#2 ATTTTCTTGTTTTGGATTTCAGAGACTTCAG-AGATATTTTTTTTTAAGAAATAGAATTA 633
consensus_5465#1 -ACTAGTAGTTGTAGCTAGTAGNTAGTACACAAATTCGTTGGCAGTCCGGGTTACNGGTA 690
** * * * ** * * * * * *
consensus_5465#0 GTATC-ATTGCGGAAATGTTCCAGCGGCAAGCGTTGTTCCCGGGCACGGCCGAGGGCAAT 757
consensus_5465#2 GTCTTGATTATACTTATTTTCATTT----------------------------------- 658
consensus_5465#1 ATTTC-ACTANTCTAGTACTGTAATGCCTCGTGCCGAATTCTNGGCTCGC--AGGGCAAT 747
* * * * * *
consensus_5465#0 CAGCTGGAACGAATATTCGAATTAACTGGCCGCCCATCGGAAGCGCAGTGGCCGAGGGGC 817
consensus_5465#2 ------------------------------------------------------------
consensus_5465#1 CC-CTATNGGAGTCGTTTAAATCAN----------------------------------- 771
consensus_5465#0 ATTTCGATCGTGCGGGAAAACTTCCGCTCCACCCAGCGGCGGGAACCGCGCGAATTCTGN 877
consensus_5465#2 ------------------------------------------------------------
consensus_5465#1 ------------------------------------------------------------
consensus_5465#0 CCGAAGATGTGCGACAATGCGAACGATCTCCTAAAGAGCATGCTCGCCTTCAGCCGGCAC 937
consensus_5465#2 ------------------------------------------------------------
consensus_5465#1 ------------------------------------------------------------
consensus_5465#0 GAACGTCCGTCCGCAAGGNAGTGCCTTAACCATGCCTACTTCAACAGGAACCGATGCCGA 997
consensus_5465#2 ------------------------------------------------------------
consensus_5465#1 ------------------------------------------------------------
consensus_5465#0 CGTAAGGGAGCATCNCCTTA 1017
consensus_5465#2 --------------------
consensus_5465#1 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||