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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5466#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 924 fasta sequence
[CCGCCCACGCGTCCGCACAGAACCACCATCGTAGCAATTTTGGCATCATTTTGCTAAAATGGGTGAAATATGTCGTCTTTGCCTGGACTCGCTGCCCAAATGTACCGGAATATCGATAAAAAATGAACAATTTAAGGAAGAGTTGAAGGCTGCTTTTCGTTTTGAAATTGATTATAAATCTAACCTACCGGAGCTTGTGTGTGATCGATGCCGAGATACAGTTTCGCATATACACACCTACATCCAGGATGTGTGGTCCAACCAGCAGAGTTTGCTCTTAGAGGCTAACACTACTGTCGTTCAGCCAGAGGAATATTTGGTCGAGAAAGACGTAAGTGACACAAAGTTGTTTGAAAAGGAAGAACTGCCAAAGATGCAGGAACCCGGCGTAGTACAGGATCTGCAGATTGAGTTCGTTCAGCCTGATCCGGATCCGATCGGTTTGAATGATGACGATGCTAACGAAAAACGCAACATTGCCAGTAGTGAGGACGACGATGATACGCTGCAAGTGAAGGAAAAGGAACCGGCGGAAACGGCGGAAACGGCGGATCAACCCAGTAGCAAGAAGGCTAAGACATCGGTCTCCAATAAACCGAAAAAGACGCGTGCAAATCGAAAGGAAAACGACAAGATCATCGACGAGTTTTACACCATGGCAGTGTGAGATCTGTTCGGCACCTGCAAATAACTTTGGGACGTTGGTAAACCATTACCGTGCGGAGCACGATATAAAGGGCTACGTGCGGTGCTGCGATAAGCAGTACTTTAATCGGTCCTACCTGGTAGACCACATTGCATCGCACAAAGGATTAACGCGGTGCGAGATTTGCGACCGTACTTACAAAACAATGCGCTACCTGAACCAGCACATGAGTGAGAGTCACAGCCAGCGAGATGCAAAACCATTCAAATGTACCCAAT]
[+] EMBL BM583001 [CCGCCCACGCGTCCGCACAGAACCACCATCGTAGCAATTTTGGCATCATTTTGCTAAAATGGGTGAAATATGTCGTCTTTGCCTGGACTCGCTGCCCAAATGTACCGGAATATCGATAAAAAATGAACAATTTAAGGAAGAGTTGAAGGCTGCTTTTCGTTTTGAAATTGATTATAAATCTAACCTACCGGAGCTTGTGTGTGATCGATGCCGAGATACAGTTTCGCATATACACACCTACATCCAGGATGTGTGGTCCAACCAGCAGAGTTTGCTCTTAGAGGCTAACACTACTGTCGTTCAGCCAGAGGAATATTTGGTCGAGAAAGACGTAAGTGACACAAAGTTGTTTGAAAAGGAAGAACTGCCAAAGATGCAGGAACCCGGCGTAGTACAGGATCTGCAGATTGAGTTCGTTCAGCCTGATCCGGATCCGATCGGTTTGAATGATGACGATGCTAACGAAAAACGCAACATTGCCAGTAGTGAGGACGACGATGATACGCTGCAAGTGAAGGAAAAGGAACCGGCGGAAACGGCGGAAACGGCGGATCAACCCAGTAGCAAGAAGGCTAAGACATCGGTCTCCAATAAACCGAAAAAGACGCGTGCAAATCGAAAGGAAAACGACAAGATCATCGACGAGTTTTACACCATGGCAGTGTGAGATCTGTTCGGCACCTGCAAATAACTTTGGGACGTTGGTAAA ]
[+] EMBL BM632399 [ ccgAGCAATTTTGGCATCATTTTGCTAAAATGGGTGAAATATGTCGTCTTTGCCTGGACTCGCTGCCCAAATGTACCGGAATATCGATAAAAAATGAACAATTTAAGGAAGAGTTGAAGGCTGCTTTTCGTTTTGAAATTGATTATAAATCTAACCTACCGGAGCTTGTGTGTGATCGATGCCGAGATACAGTTTCGCATATACACACCTACATCCAGGATGTGTGGTCCAACCAGCAGAGTTTGCTCTTAGAGGCTAACACTACTGTCGTTCAGCCAGAGGAATATTTGGTCGAGAAAGACGTAAGTGACACAAAGTTGTTTGAAAAGGAAGAACTGCCAAAGATGCAGGAACCCGGCGTAGTACAGGATCTGCAGATTGAGTTCGTTCAGCCTGATCCGGATCCGATCGGTTTGAATGATGACGATGCTAACGAAAAACGCAACATTGCCAGTAGTGAGGACGACGATGATACGCTGCAAGTGAAGGAAAAGGAACCGGCGGAAACGGCGGAAACGGCGGATCAACCCAGTAGCAAGAAGGCTAAGACATCGGTCTCCAATAAACCGAAAAAGACGCGTGCAAATCGAAAGG ]
[+] EMBL BM576165 [ ccGCAGAGTTTGCTCTTAGAGGCTAACACTACTGTCGTTCAGCCAGAGGAATATTTGGTCGAGAAAGACGTAAGTGACACAAAGTTGTTTGAAAAGGAAGAACTGCCAAAGATACAGGAACCCGGCGTAGTACAGGATCTGCAGATTGAGTTCGTTCAGCCTGATCCGGATCCGATCGGTTTGAATGATGACGATGCTAACGAAAAACGCAACATTGCCAGTAGTGAGGACGACGATGATACGCTGCAAGTGAAGGAAAAGGAACCGGCGGAAACGGCGGAAACGGCGGATCAACCCAGTAGCAAGAAGGCTAAGACATCGGTCTCCGATAAACCGAAAAAGACGCGTGCAAATCGAAAGGAAAACGACAAGATCATCGACGAGTTTTACACCATGG AGTGTGAGATCTGTTCGGCACCTGCAAATAACTTTGGGACGTTGATAAACCATTACCGTGCGGAGCACGATATAAAGGGCTACGTGCGGTGCTGCGATAAGCAGTACTTTAATCGGTCCTACCTGGTAGACCACATTGCATCGCACAAAGGATTAACGCGGTGCGAGATTTGCGACCGTACTTACAAAACAATGCGCTACCTGAACCAGCACATGAGTGAGAGTCACAGCCAGCGAGATGCAAAACCATTCAAATGTACCCAAT]
consensusID : consensus_5466#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence
[CCGGAAACAGTAAACACATAACCACCATCGTAGCAATTTTGGCATCATTTTGCTAAAATGGGTGAAATATGTCGTCTTTGCCTGGACTCGCTGCCCAAATGTACCGGAATATCGATAAAAAATGAACAATTTAAGGAAGAGTTGAAGGCTGCTTTTCGTTTTGAAATTGATTATAAATCTAACCTACCGGAGCTTGTGTGTGATCGATGCCGAGACACAGTTTCGCATATACACACCTACATCCAGGATGTGTGGTCCAACCAGCAGAGTTTGCTCTTAGAGGCTAACACTACTGTCGTTCAGCCAGAGGAATATTTGGTCGAGAAAGACGTAAGTGACACAAAGTTGTTTGAAAAGGAAGAACTGCCAAAGATACAGGAACCCGGCGTAGTACAGGATCTGCAGATTGAGTTCGTTCAGCCTGATCCGGATCCGATCGGTTTGAATGATGACGATGCTAACGAAAAACGCAACATTGCCAGTAGTGAGGACGACGATGATACGCTGCAAGTGAAGGAAAAGGAACCGGCGGAAACGGCGGAAACGGCGGATCAACCCAGTAGCAAGAAGGCTAAGACATCGGTCTCCGATAAACCGAAAAAGACGCGTGCAAATCGA]
[+] EMBL BM595662 [CCGGAAACAGTAAACACATAACCACCATCGTAGCAATTTTGGCATCATTTTGCTAAAATGGGTGAAATATGTCGTCTTTGCCTGGACTCGCTGCCCAAATGTACCGGAATATCGATAAAAAATGAACAATTTAAGGAAGAGTTGAAGGCTGCTTTTCGTTTTGAAATTGATTATAAATCTAACCTACCGGAGCTTGTGTGTGATCGATGCCGAGACACAGTTTCGCATATACACACCTACATCCAGGATGTGTGGTCCAACCAGCAGAGTTTGCTCTTAGAGGCTAACACTACTGTCGTTCAGCCAGAGGAATATTTGGTCGAGAAAGACGTAAGTGACACAAAGTTGTTTGAAAAGGAAGAACTGCCAAAGATACAGGAACCCGGCGTAGTACAGGATCTGCAGATTGAGTTCGTTCAGCCTGATCCGGATCCGATCGGTTTGAATGATGACGATGCTAACGAAAAACGCAACATTGCCAGTAGTGAGGACGACGATGATACGCTGCAAGTGAAGGAAAAGGAACCGGCGGAAACGGCGGAAACGGCGGATCAACCCAGTAGCAAGAAGGCTAAGACATCGGTCTCCGATAAACCGAAAAAGACGCGTGCAAATCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5466#0 CCGCCCACGCGTCCGCACAGAACCACCATCGTAGCAATTTTGGCATCATTTTGCTAAAAT 60
consensus_5466#1 CCGGAAACA-GTAAACACATAACCACCATCGTAGCAATTTTGGCATCATTTTGCTAAAAT 59
*** ** ** **** ****************************************
consensus_5466#0 GGGTGAAATATGTCGTCTTTGCCTGGACTCGCTGCCCAAATGTACCGGAATATCGATAAA 120
consensus_5466#1 GGGTGAAATATGTCGTCTTTGCCTGGACTCGCTGCCCAAATGTACCGGAATATCGATAAA 119
************************************************************
consensus_5466#0 AAATGAACAATTTAAGGAAGAGTTGAAGGCTGCTTTTCGTTTTGAAATTGATTATAAATC 180
consensus_5466#1 AAATGAACAATTTAAGGAAGAGTTGAAGGCTGCTTTTCGTTTTGAAATTGATTATAAATC 179
************************************************************
consensus_5466#0 TAACCTACCGGAGCTTGTGTGTGATCGATGCCGAGATACAGTTTCGCATATACACACCTA 240
consensus_5466#1 TAACCTACCGGAGCTTGTGTGTGATCGATGCCGAGACACAGTTTCGCATATACACACCTA 239
************************************ ***********************
consensus_5466#0 CATCCAGGATGTGTGGTCCAACCAGCAGAGTTTGCTCTTAGAGGCTAACACTACTGTCGT 300
consensus_5466#1 CATCCAGGATGTGTGGTCCAACCAGCAGAGTTTGCTCTTAGAGGCTAACACTACTGTCGT 299
************************************************************
consensus_5466#0 TCAGCCAGAGGAATATTTGGTCGAGAAAGACGTAAGTGACACAAAGTTGTTTGAAAAGGA 360
consensus_5466#1 TCAGCCAGAGGAATATTTGGTCGAGAAAGACGTAAGTGACACAAAGTTGTTTGAAAAGGA 359
************************************************************
consensus_5466#0 AGAACTGCCAAAGATGCAGGAACCCGGCGTAGTACAGGATCTGCAGATTGAGTTCGTTCA 420
consensus_5466#1 AGAACTGCCAAAGATACAGGAACCCGGCGTAGTACAGGATCTGCAGATTGAGTTCGTTCA 419
*************** ********************************************
consensus_5466#0 GCCTGATCCGGATCCGATCGGTTTGAATGATGACGATGCTAACGAAAAACGCAACATTGC 480
consensus_5466#1 GCCTGATCCGGATCCGATCGGTTTGAATGATGACGATGCTAACGAAAAACGCAACATTGC 479
************************************************************
consensus_5466#0 CAGTAGTGAGGACGACGATGATACGCTGCAAGTGAAGGAAAAGGAACCGGCGGAAACGGC 540
consensus_5466#1 CAGTAGTGAGGACGACGATGATACGCTGCAAGTGAAGGAAAAGGAACCGGCGGAAACGGC 539
************************************************************
consensus_5466#0 GGAAACGGCGGATCAACCCAGTAGCAAGAAGGCTAAGACATCGGTCTCCAATAAACCGAA 600
consensus_5466#1 GGAAACGGCGGATCAACCCAGTAGCAAGAAGGCTAAGACATCGGTCTCCGATAAACCGAA 599
************************************************* **********
consensus_5466#0 AAAGACGCGTGCAAATCGAAAGGAAAACGACAAGATCATCGACGAGTTTTACACCATGGC 660
consensus_5466#1 AAAGACGCGTGCAAATCGA----------------------------------------- 618
*******************
consensus_5466#0 AGTGTGAGATCTGTTCGGCACCTGCAAATAACTTTGGGACGTTGGTAAACCATTACCGTG 720
consensus_5466#1 ------------------------------------------------------------
consensus_5466#0 CGGAGCACGATATAAAGGGCTACGTGCGGTGCTGCGATAAGCAGTACTTTAATCGGTCCT 780
consensus_5466#1 ------------------------------------------------------------
consensus_5466#0 ACCTGGTAGACCACATTGCATCGCACAAAGGATTAACGCGGTGCGAGATTTGCGACCGTA 840
consensus_5466#1 ------------------------------------------------------------
consensus_5466#0 CTTACAAAACAATGCGCTACCTGAACCAGCACATGAGTGAGAGTCACAGCCAGCGAGATG 900
consensus_5466#1 ------------------------------------------------------------
consensus_5466#0 CAAAACCATTCAAATGTACCCAAT 924
consensus_5466#1 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||