cluster # 5478

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Anopheles gambiae
cluster # 5478 cluster # 5478 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5478#0 length = 725 sequences # 2

consensus_5478#1 length = 711 sequences # 1
consensus_5478#2 length = 589 sequences # 1

consensusID : consensus_5478#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 725
fasta sequence

                              [CCGCCCACGCGTCCGCAGTTTTACAAGCCACAGCATCCGTGTCGTGAAAAACACGATGTGGGGTGAACAGAGTGAAAAGTCCGCCCCGTTCGTGTGGAAGAAGAAGCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGAGGCACTGAATAGGAAAACGCAGCTCGAGAATGTCATCGAGCTGGAAAAGATAAAAAAGCGCCGGCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAGCGCTCGAAGGAAGCGGCCCAGTTCGACGAGTGGCAGCGGCAGGAGGAAACGTTCCATCTGGAGCAGGCGAAGCTGCGCAGCAAGATCCGCATACAGGACGGGCGGGCCAAACCGATCGACCTGCTCGCCCAGTACATCTCGGAGCAAAACCTGGAGGAATCGATCGAGATGCAGATGCACGAACCGTACACGTACCTGAACGGGCTGGGGCTGGACGATCTGGAGGACCTGCTGGTCGACATCAAGGTGTACAACGAGCTGGAGAAGGGGAAGAATCTGGACTTCTGGACCGATCTAACCATCATCGTGGACGATGAAATTCACAAGCTGCGCAAGGTGGAGGCGGAAAAGCAGCGCATTGCTGCCGGGCGTCGCGAAGGCATCCACCAGAGCGTAGCGAAGGATGTTACGCAGATTTTCCGCGGCAAACGGCCCAACAGCTGGAAGACCTCCAGAA]

[+] EMBL BM602060             [CCGCCCACGCGTCCGCAGTTTTACAAGCCACAGCATCCGTGTCGTGAAAAACACGATGTGGGGTGAACAGAGTGAAAAGTCCGCCCCGTTCGTGTGGAAGAAGAAGCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGAGGCACTGAATAGGAAAACGCAGCTCGAGAATGTCATCGAGCTGGAAAAGATAAAAAAGCGCCGGCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAGCGCTCGAAGGAAGCGGCCCAGTTCGACGAGTGGCAGCGGCAGGAGGAAACGTTCCATCTGGAGCAGGCGAAGCTGCGCAGCAAGATCCGCATACAGGACGGGCGGGCCAAACCGATCGACCTGCTCGCCCAGTACATCTCGGAGCAAAACCTGGAGGAATCGATCGAGATGCAGATGCACGAACCGTACACGTACCTGAACGGGCTGGGGCTGGACGATCTGGAGGACCTGCTGG                                                                                                                                                                                                                              ]
[+] EMBL BM618556             [                         AGCCACAGCACCAGTGTCGTGAAAAACACGATGTGGGGTGAACAGAGTGAAAAGTCTGCCCCGTTCGTGTGGAAGAAGAAGCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGAGGCACTGAATAGGAAAACGCAGCTCGAGAATGTAATCGAGCTGGAAAAGATTAAAAAGCGCCGGCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAGCGCTCGAAGGAGGCGGCCCAGTTCGACGAGTGGCAGCGGCAGGAGGAAACGTTCCATCTGGAGCAGGCGAAGCTGCGCAGCAAGATCCGCATACAGGACGGGCGGGCCAAACCGATCGACCTGCTCGCCCAGTACATCTCGGAGCAAAACCTGGAGGAATCGATCGAGATGCAGATGCACGAACCGTACACGTACCTGAACGGGCTGGGGCTGGACGATCTAGAGGACCTGCTGGTCGACATCAAGGTGTACAACGAGCTGGAGAAGGGGAAGAATCTGGACTTCTGGACCGATCTAACCATCATCGTGGACGATGAAATTCACAAGCTGCGCAAGGTGGAGGCGGAAAAGCAGCGCATTGCTGCCGGGCGTCGCGAAGGCATCCACCAGAGCGTAGCGAAGGATGTTACGCAGATTTTCCGCGGCAAACGGCCCAACAGCTGGAAGACCTCCAGAA]




>consensus_5478#0
CCGCCCACGCGTCCGCAGTTTTACAAGCCACAGCATCCGTGTCGTGAAAAACACGATGTG
GGGTGAACAGAGTGAAAAGTCCGCCCCGTTCGTGTGGAAGAAGAAGCTCGAGAAGCAGGG
CCTGAAGGACATCTCACGGCGCGAGCTCGAGGCACTGAATAGGAAAACGCAGCTCGAGAA
TGTCATCGAGCTGGAAAAGATAAAAAAGCGCCGGCTGGAGCGAGAGCACCAGCAGCAGCA
GCGGGAAGACGATATGTATCTGATGCAGCGCTCGAAGGAAGCGGCCCAGTTCGACGAGTG
GCAGCGGCAGGAGGAAACGTTCCATCTGGAGCAGGCGAAGCTGCGCAGCAAGATCCGCAT
ACAGGACGGGCGGGCCAAACCGATCGACCTGCTCGCCCAGTACATCTCGGAGCAAAACCT
GGAGGAATCGATCGAGATGCAGATGCACGAACCGTACACGTACCTGAACGGGCTGGGGCT
GGACGATCTGGAGGACCTGCTGGTCGACATCAAGGTGTACAACGAGCTGGAGAAGGGGAA
GAATCTGGACTTCTGGACCGATCTAACCATCATCGTGGACGATGAAATTCACAAGCTGCG
CAAGGTGGAGGCGGAAAAGCAGCGCATTGCTGCCGGGCGTCGCGAAGGCATCCACCAGAG
CGTAGCGAAGGATGTTACGCAGATTTTCCGCGGCAAACGGCCCAACAGCTGGAAGACCTC
CAGAA

consensusID : consensus_5478#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 711
fasta sequence

                              [CCGGCCACAGCACCAGTGTCGTGAAAAAGTACGTGAAAATTAGTGAAAAACCGAAAAGTTTCCATCGATTTCCACTAACACCGCCTTCCTTACCTCTTCCTCCAGCACGATGTGGGGTGAACAGAGTGAAAAGTCTGCCCCGTTCGTGTGGAAGAAGAAGCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGAGGCACTGAATAGGAAAACGCAGCTCGAGAATGTAATCGAGCTGGAAAAGATTAAAAAGCGCCGGCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAGCGCTCGAAGGAGGCGGCCCAGTTCGACGAGTGGCAGCGGCAGGAGGAAACGTTCCATCTGGAGCAGGCGAAGCTGCGCAGCAAGATCCGCATACAGGACGGGCGGGCCAAACCGATCGACCTGCTCGCCCAGTACATCTCGGAGCAAAACCTGGAGGAATCGATCGAGATGCAGATGCACGAACCGTACACGTACCTGAACGGGCTGGGGCTGGACGATCTAGAGGACCTGCTGGTCGACATCAAGGTGTACAACGAGCTGGAGAAGGGGAAGAATCTGGACTTCTGGACCGATCTAACCATCATCGTGGACGATGAAATTCACAAGCTGCGCAAGGTGGAGGCGGAAAAGCAGCGCATTGCTGCCGGGCGTCGCGAAGGCATCCACCA]

[+] EMBL BM577144             [CCGGCCACAGCACCAGTGTCGTGAAAAAGTACGTGAAAATTAGTGAAAAACCGAAAAGTTTCCATCGATTTCCACTAACACCGCCTTCCTTACCTCTTCCTCCAGCACGATGTGGGGTGAACAGAGTGAAAAGTCTGCCCCGTTCGTGTGGAAGAAGAAGCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGAGGCACTGAATAGGAAAACGCAGCTCGAGAATGTAATCGAGCTGGAAAAGATTAAAAAGCGCCGGCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAGCGCTCGAAGGAGGCGGCCCAGTTCGACGAGTGGCAGCGGCAGGAGGAAACGTTCCATCTGGAGCAGGCGAAGCTGCGCAGCAAGATCCGCATACAGGACGGGCGGGCCAAACCGATCGACCTGCTCGCCCAGTACATCTCGGAGCAAAACCTGGAGGAATCGATCGAGATGCAGATGCACGAACCGTACACGTACCTGAACGGGCTGGGGCTGGACGATCTAGAGGACCTGCTGGTCGACATCAAGGTGTACAACGAGCTGGAGAAGGGGAAGAATCTGGACTTCTGGACCGATCTAACCATCATCGTGGACGATGAAATTCACAAGCTGCGCAAGGTGGAGGCGGAAAAGCAGCGCATTGCTGCCGGGCGTCGCGAAGGCATCCACCA]




>consensus_5478#1
CCGGCCACAGCACCAGTGTCGTGAAAAAGTACGTGAAAATTAGTGAAAAACCGAAAAGTT
TCCATCGATTTCCACTAACACCGCCTTCCTTACCTCTTCCTCCAGCACGATGTGGGGTGA
ACAGAGTGAAAAGTCTGCCCCGTTCGTGTGGAAGAAGAAGCTCGAGAAGCAGGGCCTGAA
GGACATCTCACGGCGCGAGCTCGAGGCACTGAATAGGAAAACGCAGCTCGAGAATGTAAT
CGAGCTGGAAAAGATTAAAAAGCGCCGGCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGA
AGACGATATGTATCTGATGCAGCGCTCGAAGGAGGCGGCCCAGTTCGACGAGTGGCAGCG
GCAGGAGGAAACGTTCCATCTGGAGCAGGCGAAGCTGCGCAGCAAGATCCGCATACAGGA
CGGGCGGGCCAAACCGATCGACCTGCTCGCCCAGTACATCTCGGAGCAAAACCTGGAGGA
ATCGATCGAGATGCAGATGCACGAACCGTACACGTACCTGAACGGGCTGGGGCTGGACGA
TCTAGAGGACCTGCTGGTCGACATCAAGGTGTACAACGAGCTGGAGAAGGGGAAGAATCT
GGACTTCTGGACCGATCTAACCATCATCGTGGACGATGAAATTCACAAGCTGCGCAAGGT
GGAGGCGGAAAAGCAGCGCATTGCTGCCGGGCGTCGCGAAGGCATCCACCA

consensusID : consensus_5478#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence

                              [ATCGGCACGAGGANGTNATACAAGCCACAGCACCAGTGTCGTGAAAAACGTACGTGAAAATTAGTGAAAAAGCCGTAAAAGTTTCCATCGATTTCCTACTAACATCCGCCTTCCTTACCTCTTCCTCCAGCACGATGTGGGGTGAACAGAGTGAAAAGTCTGCCCCGTTTCGTGTGGAAGAAGAACGCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGACGGCACTGAATAGGAAAACGGCAGGCTCGAGAATGTAATCGGAGCTGGAAAAGATTCAGAGAAGCGCCGGCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAGGCGCTCGAAGCGAGGACGGACCAGGTTCGACGAGTGGCTAGCGAGCAGGAGGGANNACGTTGCCATCTGGAGCAGGCGGAANGCTGCGCAGNGCAAGATCCGGGATACAGGTACGGGNGCGGGGCCAAACCGAGTCGACCTGCGTCGCCCCGAGTTACATACTCGGGAGCCAAAANACCTGGNCAGGAAACTCCGATCCGAGATGCAGATGCGACGAAACCCGTACACGGTACC]

[+] EMBL BX468707             [ATCGGCACGAGGANGTNATACAAGCCACAGCACCAGTGTCGTGAAAAACGTACGTGAAAATTAGTGAAAAAGCCGTAAAAGTTTCCATCGATTTCCTACTAACATCCGCCTTCCTTACCTCTTCCTCCAGCACGATGTGGGGTGAACAGAGTGAAAAGTCTGCCCCGTTTCGTGTGGAAGAAGAACGCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGACGGCACTGAATAGGAAAACGGCAGGCTCGAGAATGTAATCGGAGCTGGAAAAGATTCAGAGAAGCGCCGGCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAGGCGCTCGAAGCGAGGACGGACCAGGTTCGACGAGTGGCTAGCGAGCAGGAGGGANNACGTTGCCATCTGGAGCAGGCGGAANGCTGCGCAGNGCAAGATCCGGGATACAGGTACGGGNGCGGGGCCAAACCGAGTCGACCTGCGTCGCCCCGAGTTACATACTCGGGAGCCAAAANACCTGGNCAGGAAACTCCGATCCGAGATGCAGATGCGACGAAACCCGTACACGGTACC]




>consensus_5478#2
ATCGGCACGAGGANGTNATACAAGCCACAGCACCAGTGTCGTGAAAAACGTACGTGAAAA
TTAGTGAAAAAGCCGTAAAAGTTTCCATCGATTTCCTACTAACATCCGCCTTCCTTACCT
CTTCCTCCAGCACGATGTGGGGTGAACAGAGTGAAAAGTCTGCCCCGTTTCGTGTGGAAG
AAGAACGCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGACGGCACTGA
ATAGGAAAACGGCAGGCTCGAGAATGTAATCGGAGCTGGAAAAGATTCAGAGAAGCGCCG
GCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAGGCGCT
CGAAGCGAGGACGGACCAGGTTCGACGAGTGGCTAGCGAGCAGGAGGGANNACGTTGCCA
TCTGGAGCAGGCGGAANGCTGCGCAGNGCAAGATCCGGGATACAGGTACGGGNGCGGGGC
CAAACCGAGTCGACCTGCGTCGCCCCGAGTTACATACTCGGGAGCCAAAANACCTGGNCA
GGAAACTCCGATCCGAGATGCAGATGCGACGAAACCCGTACACGGTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5478#1      --------------------CCGGCCACAGCACCAGTGTCGTGAAAAA-GTACGTGAAAA 39
consensus_5478#2      ATCGGCACGAGGANGTNATACAAGCCACAGCACCAGTGTCGTGAAAAACGTACGTGAAAA 60
consensus_5478#0      ------------------------------------------------------------
                                                                                  

consensus_5478#1      TTAGTGAAAAA-CCG-AAAAGTTTCCATCGATTTCC-ACTAACA-CCGCCTTCCTTACCT 95
consensus_5478#2      TTAGTGAAAAAGCCGTAAAAGTTTCCATCGATTTCCTACTAACATCCGCCTTCCTTACCT 120
consensus_5478#0      ------------CCGCCCACGCGTCCGCAGTTTTACAAGCCACA---GCATCCGTGTCGT 45
                                  ***   * *  ***   * *** * *   ***   ** * * *  * *

consensus_5478#1      CTTCCTCCAGCACGATGTGGGGTGAACAGAGTGAAAAGTCTGCCCCGTT-CGTGTGGAAG 154
consensus_5478#2      CTTCCTCCAGCACGATGTGGGGTGAACAGAGTGAAAAGTCTGCCCCGTTTCGTGTGGAAG 180
consensus_5478#0      GAA----AAACACGATGTGGGGTGAACAGAGTGAAAAGTCCGCCCCGTT-CGTGTGGAAG 100
                              * ****************************** ******** **********

consensus_5478#1      AAGAA-GCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGA-GGCACTGA 212
consensus_5478#2      AAGAACGCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGACGGCACTGA 240
consensus_5478#0      AAGAA-GCTCGAGAAGCAGGGCCTGAAGGACATCTCACGGCGCGAGCTCGA-GGCACTGA 158
                      ***** ********************************************* ********

consensus_5478#1      ATAGGAAAACGC--AGCTCGAGAATGTAATCG-AGCTGGAAAAGATT--AAAAAGCGCCG 267
consensus_5478#2      ATAGGAAAACGGCAGGCTCGAGAATGTAATCGGAGCTGGAAAAGATTCAGAGAAGCGCCG 300
consensus_5478#0      ATAGGAAAACGC--AGCTCGAGAATGTCATCG-AGCTGGAAAAGATA--AAAAAGCGCCG 213
                      ***********    ************ **** *************    * ********

consensus_5478#1      GCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAG-CGCT 326
consensus_5478#2      GCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAGGCGCT 360
consensus_5478#0      GCTGGAGCGAGAGCACCAGCAGCAGCAGCGGGAAGACGATATGTATCTGATGCAG-CGCT 272
                      ******************************************************* ****

consensus_5478#1      CGAAG--GAGGCGGCCCAG-TTCGACGAGTGGC-AGCG-GCAGGAGG--AAACGTT-CCA 378
consensus_5478#2      CGAAGCGAGGACGGACCAGGTTCGACGAGTGGCTAGCGAGCAGGAGGGANNACGTTGCCA 420
consensus_5478#0      CGAAG--GAAGCGGCCCAG-TTCGACGAGTGGC-AGCG-GCAGGAGG--AAACGTT-CCA 324
                      *****      *** **** ************* **** ********    ***** ***

consensus_5478#1      TCTGGAGCAGGCG--AAGCTGCGCAGC--AAGATCCGC-ATACAGG-ACGGGCG---GGC 429
consensus_5478#2      TCTGGAGCAGGCGGAANGCTGCGCAGNGCAAGATCCGGGATACAGGTACGGGNGCGGGGC 480
consensus_5478#0      TCTGGAGCAGGCG--AAGCTGCGCAGC--AAGATCCGC-ATACAGG-ACGGGCG---GGC 375
                      *************  * *********   ********  ******* ***** *   ***

consensus_5478#1      CAAACCGA-TCGACCTGC-TCGCCCAG---TACAT-CTCGG-AGC---AAAACCTGG--A 477
consensus_5478#2      CAAACCGAGTCGACCTGCGTCGCCCCGAGTTACATACTCGGGAGCCAAAANACCTGGNCA 540
consensus_5478#0      CAAACCGA-TCGACCTGC-TCGCCCAG---TACAT-CTCGG-AGC---AAAACCTGG--A 423
                      ******** ********* ****** *   ***** ***** ***   ** ******  *

consensus_5478#1      GGAA---TCGATC-GAGATGCAGATGC-ACGAA--CCGTACACG-TACCTGAACGGGCTG 529
consensus_5478#2      GGAAACTCCGATCCGAGATGCAGATGCGACGAAACCCGTACACGGTACC----------- 589
consensus_5478#0      GGAA---TCGATC-GAGATGCAGATGC-ACGAA--CCGTACACG-TACCTGAACGGGCTG 475
                      ****    ***** ************* *****  ********* ****           

consensus_5478#1      GGGCTGGACGATCTAGAGGACCTGCTGGTCGACATCAAGGTGTACAACGAGCTGGAGAAG 589
consensus_5478#2      ------------------------------------------------------------
consensus_5478#0      GGGCTGGACGATCTGGAGGACCTGCTGGTCGACATCAAGGTGTACAACGAGCTGGAGAAG 535
                                                                                  

consensus_5478#1      GGGAAGAATCTGGACTTCTGGACCGATCTAACCATCATCGTGGACGATGAAATTCACAAG 649
consensus_5478#2      ------------------------------------------------------------
consensus_5478#0      GGGAAGAATCTGGACTTCTGGACCGATCTAACCATCATCGTGGACGATGAAATTCACAAG 595
                                                                                  

consensus_5478#1      CTGCGCAAGGTGGAGGCGGAAAAGCAGCGCATTGCTGCCGGGCGTCGCGAAGGCATCCAC 709
consensus_5478#2      ------------------------------------------------------------
consensus_5478#0      CTGCGCAAGGTGGAGGCGGAAAAGCAGCGCATTGCTGCCGGGCGTCGCGAAGGCATCCAC 655
                                                                                  

consensus_5478#1      CA---------------------------------------------------------- 711
consensus_5478#2      ------------------------------------------------------------
consensus_5478#0      CAGAGCGTAGCGAAGGATGTTACGCAGATTTTCCGCGGCAAACGGCCCAACAGCTGGAAG 715
                                                                                  

consensus_5478#1      ----------
consensus_5478#2      ----------
consensus_5478#0      ACCTCCAGAA 725