cluster # 5486

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5486 cluster # 5486 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5486#0 length = 1102 sequences # 3

consensus_5486#1 length = 669 sequences # 1

consensusID : consensus_5486#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1102
fasta sequence

                              [CCGATCCGGTGTACCGGGAAACGGCCACACAGCTTCTCTCGATTCCAACGAAAACGGTCGGTGCACCAGGTTTGCTGTATGTGTGCCAGCGTGAAATGGCCGCCGTCGCTCCACACGATCGAAACGTGAACATAATTGGATCGGACGATGCAACCACATGCATTATCGTCGTAGTGCGGCATTCCGGTTCCGGTGCGATCGCACTGGCACACCTGGACGGCAACGGTACGGACGAGGCCGTGTCGGCAATGGTCGCCCGCGTCCAGGAGCTTGCGTTCGGCTACCCGGAAGGCCGCATCGAGCTACAGCTTATTGGAGGCTTCAGCGATCCGCAGGGCTATGCGGAAGATCTGTTCAGTAATATTATGCAATCATTCCACAAACATCCGCTGGAGATCGATCTGACCCAGTCATGCGTCGGCGAGCTCAACACGATGGTGCGCGATGACATCAACTGGCCGATCATCTACGGCGTCGGCGTGAACATCAAGACGGGCGAAATCTTTCCCGCCAACTTCCCGGACAAGGGACCGGATCTGCCACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATGATGCCGCTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTGATCTTTGGTTGGCGCAGAGCGATGAGTTTATACTGAAGCATCTTTCCACCAGTCCGGAGGTGGAACCGCCACACTTTGCCATGCAGGTCCGTGCCACACTTAGATACATTTAGGACAATCAGTTCCCGGCCGTTACCGTCTTCCGCAACAACAATCCGCACTACTTCCGGCGGGACGAGACGACCGGCTGCTGGACACCGGTTCGGTACTGAGCCAGACGGTGGGCGAGTCGATTTCTTCGCTTACGACAGAGGACACAACGTTGTATACCGCTTCCGTAGATTGATTTCCCCCAGAGCCCCCGTCGTAGTAGTGTAGTAGTGTTGTACTGCTTTCCCTTGTTTTCTCCCAATCCAAACATATTTATCAAAAACAAAACCTGTCGTGCCAATATATGAATGCGGAAAGGCAAAATGTTATAATATTATGATTCCCGCGCAGCTTGTTA]

[+] EMBL BM577247             [CCGATCCGGTGTACCGGGAAACGGCCACACAGCTTCTCTCGATTCCAACGAAAACGGTCGGTGCACCAGGTTTGCTGTATGTGTGCCAGCGTGAAATGGCCGCCGTCGCTCCACACGATCGAAACGTGAACATAATTGGATCGGACGATGCAACCACATGCATTATCGTCGTAGTGCGGCATTCCGGTTCCGGTGCGATCGCACTGGCACACCTGGACGGCAACGGTACGGACGAGGCCGTGTCGGCAATGGTCGCCCGCGTCCAGGAGCTTGCGTTCGGCTACCCGGAAGGCCGCATCGAGCTACAGCTTATTGGAGGCTTCAGCGATCCGCAGGGCTATGCGGAAGATCTGTTCAGTAATATTATGCAATCATTCCACAAACATCCGCTGGAGATCGATCTGACCCAGTCATGCGTCGGCGAGCTCAACACGATGGTGCGCGATGACATCAACTGGCCGATCATCTACGGCGTCGGCGTGAACATCAAGACGGGCGAAATCTTTCCCGCCAACTTCCCGGACAAGGGACCGGATCTGCCACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATGATGCCGCTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTGATCTTTGGTTGGCGCAGA                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX616609             [                                                                                                                                                                                                                                                                                                                                                                                                                    ACCCAGTCGTGCGTCGGCGAGCTCAACACAATGGTGCGCGATGACATCAACTGGCCGATCATCTACGGCGTCGGCGTGAACATCAAGACGGGCGAAATCTTTCCCGCCAACTTCCCGGACAAGGGACCGGATCTGCCACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATGATGCCCCTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTGATCTTTGGTTGGCGCAGAGCGATGAGTTTATACTGAAGCATCTTTCCACCAGTCCGGAGGTGGAACCGCCACACTTTGCCATGCAGGTCCGTGCCACACTTAGATACATTTAGGACAATCAGTTCCCGGCCGTTACCGTCTTCCGCAACAACAATCCGCACTACTTCCGGCGGGACGAGACGACCGGCTGCTGGACACCGGTTCGGTA                                                                                                                                                                                                                                                ]
[+] EMBL BX620996             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAACTTCCCGGACAAGGGACCGGATCTGCCACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATGATGCCGCTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTGATCTTTGGTTGGCGCAGAGTGATGAGTTTATACTGAAGCATCTTTCCACCAGTCCGGAGGTGGAACCGCCACACTTTGCCATGCAGGTCCGTGCCACACTTAGATACATTCAGGACAATCAGTTTCCGGCCGTTACCGTCTTCCGCAACAACAATCCGCACTACTTCCGGCGGGACGAGACGACCGGCTGCTGGACACCGGTTCGGTACTGAGCCAGACGGTGGGCGAGTCGATTTCTTCGCTTACGACAGAGGACACAACGTTGTATACCGCTTCCGTAGATTGATTTCCCCCAGAGCCCCCGTCGTAGTAGTGTAGTAGTGTTGTACTGCTTTCCCTTGTTTTCTCCCAATCCAAACATATTTATCAAAAACAAAACCTGTCGTGCCAATATATGAATGCGGAAAGGCAAAATGTTATAATATTATGATTCCCGCGCAGCTTGTTA]




>consensus_5486#0
CCGATCCGGTGTACCGGGAAACGGCCACACAGCTTCTCTCGATTCCAACGAAAACGGTCG
GTGCACCAGGTTTGCTGTATGTGTGCCAGCGTGAAATGGCCGCCGTCGCTCCACACGATC
GAAACGTGAACATAATTGGATCGGACGATGCAACCACATGCATTATCGTCGTAGTGCGGC
ATTCCGGTTCCGGTGCGATCGCACTGGCACACCTGGACGGCAACGGTACGGACGAGGCCG
TGTCGGCAATGGTCGCCCGCGTCCAGGAGCTTGCGTTCGGCTACCCGGAAGGCCGCATCG
AGCTACAGCTTATTGGAGGCTTCAGCGATCCGCAGGGCTATGCGGAAGATCTGTTCAGTA
ATATTATGCAATCATTCCACAAACATCCGCTGGAGATCGATCTGACCCAGTCATGCGTCG
GCGAGCTCAACACGATGGTGCGCGATGACATCAACTGGCCGATCATCTACGGCGTCGGCG
TGAACATCAAGACGGGCGAAATCTTTCCCGCCAACTTCCCGGACAAGGGACCGGATCTGC
CACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATGATGCCG
CTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTGATCTTT
GGTTGGCGCAGAGCGATGAGTTTATACTGAAGCATCTTTCCACCAGTCCGGAGGTGGAAC
CGCCACACTTTGCCATGCAGGTCCGTGCCACACTTAGATACATTTAGGACAATCAGTTCC
CGGCCGTTACCGTCTTCCGCAACAACAATCCGCACTACTTCCGGCGGGACGAGACGACCG
GCTGCTGGACACCGGTTCGGTACTGAGCCAGACGGTGGGCGAGTCGATTTCTTCGCTTAC
GACAGAGGACACAACGTTGTATACCGCTTCCGTAGATTGATTTCCCCCAGAGCCCCCGTC
GTAGTAGTGTAGTAGTGTTGTACTGCTTTCCCTTGTTTTCTCCCAATCCAAACATATTTA
TCAAAAACAAAACCTGTCGTGCCAATATATGAATGCGGAAAGGCAAAATGTTATAATATT
ATGATTCCCGCGCAGCTTGTTA

consensusID : consensus_5486#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [CCGCCCACGCGTCCGAATCATTCCACAAACATCCGCTGGAGATCGATCTGACCCAGTCGTGCGTCGGCGAGCTCAACACGATGGTGCGCGATGACATCAACTGGCCGATCATCTACGGCGTCGGCGTAAACATCAAGACGGGCGAAATCTTTCCCGCCAACTTCCCGGACAAGGGACCGGATCTGCCACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATGATGCCGCTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTGATCTTTGGTTGGCGCAGAGCGATGAGTTTATACTGAAGCATCTTTCCACCAGTCCGGAGGTGGAACCGCCACACTTTGCCATGCAGGTCCGTGCCACACTTAGATACATTCAGGACAATCAGTTCCCGGCCGTTACCGTCTTCCGCAACAACAATCCGCACTACTTCCGGCGGGACGAGACGACCGGCTGCTGGACACCGGTTCGGTACTGAGCCAGACGGTTGACGGGCCGATTTCTTCGCTCACGACAGAGGACACAACGTTGTATACCGCATTCCGTAGATTGATTTCCCCCAGAGCCCCCGTCGTAGTAGTGGAAGTAGTGTTGTACTGCTTTCCCTTGGTTTCTTCCAATCCAAACATATTTAT]

[+] EMBL BM577491             [CCGCCCACGCGTCCGAATCATTCCACAAACATCCGCTGGAGATCGATCTGACCCAGTCGTGCGTCGGCGAGCTCAACACGATGGTGCGCGATGACATCAACTGGCCGATCATCTACGGCGTCGGCGTAAACATCAAGACGGGCGAAATCTTTCCCGCCAACTTCCCGGACAAGGGACCGGATCTGCCACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATGATGCCGCTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTGATCTTTGGTTGGCGCAGAGCGATGAGTTTATACTGAAGCATCTTTCCACCAGTCCGGAGGTGGAACCGCCACACTTTGCCATGCAGGTCCGTGCCACACTTAGATACATTCAGGACAATCAGTTCCCGGCCGTTACCGTCTTCCGCAACAACAATCCGCACTACTTCCGGCGGGACGAGACGACCGGCTGCTGGACACCGGTTCGGTACTGAGCCAGACGGTTGACGGGCCGATTTCTTCGCTCACGACAGAGGACACAACGTTGTATACCGCATTCCGTAGATTGATTTCCCCCAGAGCCCCCGTCGTAGTAGTGGAAGTAGTGTTGTACTGCTTTCCCTTGGTTTCTTCCAATCCAAACATATTTAT]




>consensus_5486#1
CCGCCCACGCGTCCGAATCATTCCACAAACATCCGCTGGAGATCGATCTGACCCAGTCGT
GCGTCGGCGAGCTCAACACGATGGTGCGCGATGACATCAACTGGCCGATCATCTACGGCG
TCGGCGTAAACATCAAGACGGGCGAAATCTTTCCCGCCAACTTCCCGGACAAGGGACCGG
ATCTGCCACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATG
ATGCCGCTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTG
ATCTTTGGTTGGCGCAGAGCGATGAGTTTATACTGAAGCATCTTTCCACCAGTCCGGAGG
TGGAACCGCCACACTTTGCCATGCAGGTCCGTGCCACACTTAGATACATTCAGGACAATC
AGTTCCCGGCCGTTACCGTCTTCCGCAACAACAATCCGCACTACTTCCGGCGGGACGAGA
CGACCGGCTGCTGGACACCGGTTCGGTACTGAGCCAGACGGTTGACGGGCCGATTTCTTC
GCTCACGACAGAGGACACAACGTTGTATACCGCATTCCGTAGATTGATTTCCCCCAGAGC
CCCCGTCGTAGTAGTGGAAGTAGTGTTGTACTGCTTTCCCTTGGTTTCTTCCAATCCAAA
CATATTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5486#0      CCGATCCGGTGTACCGGGAAACGGCCACACAGCTTCTCTCGATTCCAACGAAAACGGTCG 60
consensus_5486#1      ------------------------------------------------------------
                                                                                  

consensus_5486#0      GTGCACCAGGTTTGCTGTATGTGTGCCAGCGTGAAATGGCCGCCGTCGCTCCACACGATC 120
consensus_5486#1      ------------------------------------------------------------
                                                                                  

consensus_5486#0      GAAACGTGAACATAATTGGATCGGACGATGCAACCACATGCATTATCGTCGTAGTGCGGC 180
consensus_5486#1      ------------------------------------------------------------
                                                                                  

consensus_5486#0      ATTCCGGTTCCGGTGCGATCGCACTGGCACACCTGGACGGCAACGGTACGGACGAGGCCG 240
consensus_5486#1      ------------------------------------------------------------
                                                                                  

consensus_5486#0      TGTCGGCAATGGTCGCCCGCGTCCAGGAGCTTGCGTTCGGCTACCCGGAAGGCCGCATCG 300
consensus_5486#1      ------------------------------------------------------------
                                                                                  

consensus_5486#0      AGCTACAGCTTATTGGAGGCTTCAGCGATCCGCAGGGCTATGCGGAAGATCTGTTCAGTA 360
consensus_5486#1      ------------------------------------------------------CCGCCC 6
                                                                             *    

consensus_5486#0      ATATTATGCAATCATTCCACAAACATCCGCTGGAGATCGATCTGACCCAGTCATGCGTCG 420
consensus_5486#1      ACGCGTCCGAATCATTCCACAAACATCCGCTGGAGATCGATCTGACCCAGTCGTGCGTCG 66
                      *        ******************************************* *******

consensus_5486#0      GCGAGCTCAACACGATGGTGCGCGATGACATCAACTGGCCGATCATCTACGGCGTCGGCG 480
consensus_5486#1      GCGAGCTCAACACGATGGTGCGCGATGACATCAACTGGCCGATCATCTACGGCGTCGGCG 126
                      ************************************************************

consensus_5486#0      TGAACATCAAGACGGGCGAAATCTTTCCCGCCAACTTCCCGGACAAGGGACCGGATCTGC 540
consensus_5486#1      TAAACATCAAGACGGGCGAAATCTTTCCCGCCAACTTCCCGGACAAGGGACCGGATCTGC 186
                      * **********************************************************

consensus_5486#0      CACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATGATGCCG 600
consensus_5486#1      CACTGCGCATGGCGCGACACTTTACTGGAAGCCATCAGGTGCTAGATATATATGATGCCG 246
                      ************************************************************

consensus_5486#0      CTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTGATCTTT 660
consensus_5486#1      CTGTTGGTATGCTGCGCATCGGTCCATTCAATTACGATCCACTGCGCGGCGTTGATCTTT 306
                      ************************************************************

consensus_5486#0      GGTTGGCGCAGAGCGATGAGTTTATACTGAAGCATCTTTCCACCAGTCCGGAGGTGGAAC 720
consensus_5486#1      GGTTGGCGCAGAGCGATGAGTTTATACTGAAGCATCTTTCCACCAGTCCGGAGGTGGAAC 366
                      ************************************************************

consensus_5486#0      CGCCACACTTTGCCATGCAGGTCCGTGCCACACTTAGATACATTTAGGACAATCAGTTCC 780
consensus_5486#1      CGCCACACTTTGCCATGCAGGTCCGTGCCACACTTAGATACATTCAGGACAATCAGTTCC 426
                      ******************************************** ***************

consensus_5486#0      CGGCCGTTACCGTCTTCCGCAACAACAATCCGCACTACTTCCGGCGGGACGAGACGACCG 840
consensus_5486#1      CGGCCGTTACCGTCTTCCGCAACAACAATCCGCACTACTTCCGGCGGGACGAGACGACCG 486
                      ************************************************************

consensus_5486#0      GCTGCTGGACACCGGTTCGGTACTGAGCCAGACGGTGGGCGAGTCGATTTCTTCGCTTAC 900
consensus_5486#1      GCTGCTGGACACCGGTTCGGTACTGAGCCAGACGGTTGACGGGCCGATTTCTTCGCTCAC 546
                      ************************************ * ** * ************* **

consensus_5486#0      GACAGAGGACACAACGTTGTATACCGC-TTCCGTAGATTGATTTCCCCCAGAGCCCCCGT 959
consensus_5486#1      GACAGAGGACACAACGTTGTATACCGCATTCCGTAGATTGATTTCCCCCAGAGCCCCCGT 606
                      *************************** ********************************

consensus_5486#0      CGTAGTAGTGTA-GTAGTGTTGTACTGCTTTCCCTTGTTTTCTCCCAATCCAAACATATT 1018
consensus_5486#1      CGTAGTAGTGGAAGTAGTGTTGTACTGCTTTCCCTTGGTTTCTTCCAATCCAAACATATT 666
                      ********** * ************************ ***** ****************

consensus_5486#0      TATCAAAAACAAAACCTGTCGTGCCAATATATGAATGCGGAAAGGCAAAATGTTATAATA 1078
consensus_5486#1      TAT--------------------------------------------------------- 669
                      ***                                                         

consensus_5486#0      TTATGATTCCCGCGCAGCTTGTTA 1102
consensus_5486#1      ------------------------